RNA–Protein interactions for RNA: ENST00000622680.1

LINC00963-214, long intergenic non-protein coding RNA 963, humanhuman

TSL 1 (best)

Gene LINC00963, Length 781 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-214ENST00000622680 NISCHQ9Y2I1 1504 aa27.91■■■□□ 2.06
LINC00963-214ENST00000622680 CCDC180Q9P1Z9 1646 aa25.26■■□□□ 1.63
LINC00963-214ENST00000622680 ABCC9O60706 1549 aa25.23■■□□□ 1.63
LINC00963-214ENST00000622680 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
LINC00963-214ENST00000622680 NACADO15069 1562 aa23.76■■□□□ 1.39
LINC00963-214ENST00000622680 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
LINC00963-214ENST00000622680 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
LINC00963-214ENST00000622680 DCAF8L2P0C7V8 631 aa23.47■■□□□ 1.35
LINC00963-214ENST00000622680 PABPN1Q86U42 306 aaKnown RBP eCLIP23.36■■□□□ 1.33
LINC00963-214ENST00000622680 BICRAQ9NZM4 1560 aa23.35■■□□□ 1.33
LINC00963-214ENST00000622680 MYO15BQ96JP2 1530 aa23.33■■□□□ 1.32
LINC00963-214ENST00000622680 ZCCHC6Q5VYS8 1495 aaKnown RBP23.13■■□□□ 1.29
LINC00963-214ENST00000622680 DCAF1Q9Y4B6 1507 aa23.02■■□□□ 1.28
LINC00963-214ENST00000622680 SCRIBQ14160 1630 aa23■■□□□ 1.27
LINC00963-214ENST00000622680 SHROOM4Q9ULL8 1493 aa22.89■■□□□ 1.25
LINC00963-214ENST00000622680 CC2D2AQ9P2K1 1620 aa22.86■■□□□ 1.25
LINC00963-214ENST00000622680 EIF4G1Q04637 1599 aaKnown RBP22.76■■□□□ 1.23
LINC00963-214ENST00000622680 CECR2Q9BXF3 1484 aa22.7■■□□□ 1.22
LINC00963-214ENST00000622680 SMARCA4P51532 1647 aa21.9■■□□□ 1.1
LINC00963-214ENST00000622680 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
LINC00963-214ENST00000622680 ATAD2BQ9ULI0 1458 aa21.82■■□□□ 1.08
LINC00963-214ENST00000622680 HMGXB3Q12766 1538 aa21.8■■□□□ 1.08
LINC00963-214ENST00000622680 SMARCA2P51531 1590 aa21.79■■□□□ 1.08
LINC00963-214ENST00000622680 ERCC6Q03468 1493 aa21.77■■□□□ 1.07
LINC00963-214ENST00000622680 DNAJC5Q9H3Z4 198 aa21.75■■□□□ 1.07
LINC00963-214ENST00000622680 CUX2O14529 1486 aa21.75■■□□□ 1.07
LINC00963-214ENST00000622680 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
LINC00963-214ENST00000622680 NESP48681 1621 aa21.68■■□□□ 1.06
LINC00963-214ENST00000622680 BAZ1BQ9UIG0 1483 aaKnown RBP21.64■■□□□ 1.05
LINC00963-214ENST00000622680 PEG3Q9GZU2 1588 aa21.63■■□□□ 1.05
LINC00963-214ENST00000622680 KIF21AQ7Z4S6 1674 aa21.58■■□□□ 1.05
LINC00963-214ENST00000622680 THOC2Q8NI27 1593 aaKnown RBP21.57■■□□□ 1.04
LINC00963-214ENST00000622680 MROH2BQ7Z745 1585 aa21.54■■□□□ 1.04
LINC00963-214ENST00000622680 LAMC3Q9Y6N6 1575 aa21.5■■□□□ 1.03
LINC00963-214ENST00000622680 WIZO95785 1651 aa21.38■■□□□ 1.01
LINC00963-214ENST00000622680 PDS5BQ9NTI5 1447 aa21.24■□□□□ 0.99
LINC00963-214ENST00000622680 MRC2Q9UBG0 1479 aa21.16■□□□□ 0.98
LINC00963-214ENST00000622680 WDR62O43379 1518 aa21.15■□□□□ 0.98
LINC00963-214ENST00000622680 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
LINC00963-214ENST00000622680 PRDM2Q13029 1718 aa21.09■□□□□ 0.97
LINC00963-214ENST00000622680 CEP164Q9UPV0 1460 aa21.06■□□□□ 0.96
LINC00963-214ENST00000622680 TOP2AP11388 1531 aaKnown RBP21.02■□□□□ 0.96
LINC00963-214ENST00000622680 FANCD2Q9BXW9 1451 aa21.01■□□□□ 0.95
LINC00963-214ENST00000622680 RSF1Q96T23 1441 aaPredicted RBP20.96■□□□□ 0.95
LINC00963-214ENST00000622680 CFTRP13569 1480 aa20.94■□□□□ 0.94
LINC00963-214ENST00000622680 URB2Q14146 1524 aaKnown RBP20.88■□□□□ 0.93
LINC00963-214ENST00000622680 TRIM41Q8WV44 630 aa20.82■□□□□ 0.92
LINC00963-214ENST00000622680 CCDC88BA6NC98 1476 aa20.71■□□□□ 0.91
LINC00963-214ENST00000622680 EIF4G3O43432 1585 aaKnown RBP20.63■□□□□ 0.89
LINC00963-214ENST00000622680 ZNF608Q9ULD9 1512 aaPredicted RBP20.63■□□□□ 0.89
LINC00963-214ENST00000622680 RIMBP3CA6NJZ7 1639 aa20.63■□□□□ 0.89
LINC00963-214ENST00000622680 RIMBP3BA6NNM3 1639 aa20.63■□□□□ 0.89
LINC00963-214ENST00000622680 RIMBP3Q9UFD9 1639 aa20.63■□□□□ 0.89
LINC00963-214ENST00000622680 TOPBP1Q92547 1522 aa20.63■□□□□ 0.89
LINC00963-214ENST00000622680 CHD1O14646 1710 aa20.61■□□□□ 0.89
LINC00963-214ENST00000622680 OSCARQ8IYS5 282 aa20.6■□□□□ 0.89
LINC00963-214ENST00000622680 IFT140Q96RY7 1462 aa20.59■□□□□ 0.89
LINC00963-214ENST00000622680 DNMBPQ6XZF7 1577 aa20.58■□□□□ 0.88
LINC00963-214ENST00000622680 TARBP1Q13395 1621 aaKnown RBP20.53■□□□□ 0.88
LINC00963-214ENST00000622680 ABCC8Q09428 1581 aa20.48■□□□□ 0.87
LINC00963-214ENST00000622680 ARHGEF11O15085 1522 aa20.47■□□□□ 0.87
LINC00963-214ENST00000622680 POLA1P09884 1462 aaPredicted RBP20.4■□□□□ 0.86
LINC00963-214ENST00000622680 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.85
LINC00963-214ENST00000622680 RAD54L2Q9Y4B4 1467 aa20.32■□□□□ 0.84
LINC00963-214ENST00000622680 WDR97A6NE52 1622 aa20.32■□□□□ 0.84
LINC00963-214ENST00000622680 PBRM1Q86U86 1689 aa20.28■□□□□ 0.84
LINC00963-214ENST00000622680 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
LINC00963-214ENST00000622680 CUX1P39880 1505 aa20.26■□□□□ 0.83
LINC00963-214ENST00000622680 ARAP1Q96P48 1450 aa20.25■□□□□ 0.83
LINC00963-214ENST00000622680 SNAPC4Q5SXM2 1469 aa20.22■□□□□ 0.83
LINC00963-214ENST00000622680 SOGA1O94964 1423 aa20.21■□□□□ 0.83
LINC00963-214ENST00000622680 FBLN2P98095 1184 aa20.21■□□□□ 0.83
LINC00963-214ENST00000622680 TDRD9Q8NDG6 1382 aaKnown RBP20.21■□□□□ 0.83
LINC00963-214ENST00000622680 CLASP1Q7Z460 1538 aa20.2■□□□□ 0.82
LINC00963-214ENST00000622680 CYB5RLQ6IPT4 315 aa20.17■□□□□ 0.82
LINC00963-214ENST00000622680 SYNJ1O43426 1573 aa20.15■□□□□ 0.82
LINC00963-214ENST00000622680 MAGI1Q96QZ7 1491 aaPredicted RBP20.12■□□□□ 0.81
LINC00963-214ENST00000622680 ABCA5Q8WWZ7 1642 aa20.1■□□□□ 0.81
LINC00963-214ENST00000622680 GRIN2BQ13224 1484 aa20.09■□□□□ 0.81
LINC00963-214ENST00000622680 SYNJ2O15056 1496 aa20.05■□□□□ 0.8
LINC00963-214ENST00000622680 GAPVD1Q14C86 1478 aa20.02■□□□□ 0.8
LINC00963-214ENST00000622680 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
LINC00963-214ENST00000622680 ABCA10Q8WWZ4 1543 aa20■□□□□ 0.79
LINC00963-214ENST00000622680 BIVM-ERCC5R4GMW8 1640 aa19.99■□□□□ 0.79
LINC00963-214ENST00000622680 TRHP20396 242 aaPredicted RBP19.99■□□□□ 0.79
LINC00963-214ENST00000622680 ADAMTS12P58397 1594 aa19.95■□□□□ 0.78
LINC00963-214ENST00000622680 TOP2BQ02880 1626 aa19.93■□□□□ 0.78
LINC00963-214ENST00000622680 SUPT5HO00267 1087 aaKnown RBP19.91■□□□□ 0.78
LINC00963-214ENST00000622680 ERCC6L2Q5T890 1561 aa19.91■□□□□ 0.78
LINC00963-214ENST00000622680 CEP170Q5SW79 1584 aa19.9■□□□□ 0.78
LINC00963-214ENST00000622680 GRIN2AQ12879 1464 aa19.88■□□□□ 0.77
LINC00963-214ENST00000622680 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
LINC00963-214ENST00000622680 WRNQ14191 1432 aaPredicted RBP eCLIP19.83■□□□□ 0.76
LINC00963-214ENST00000622680 NUP160Q12769 1436 aa19.78■□□□□ 0.76
LINC00963-214ENST00000622680 KIF13AQ9H1H9 1805 aa19.78■□□□□ 0.76
LINC00963-214ENST00000622680 ERICH3Q5RHP9 1530 aa19.76■□□□□ 0.75
LINC00963-214ENST00000622680 FHAD1B1AJZ9 1412 aa19.72■□□□□ 0.75
LINC00963-214ENST00000622680 RUSC2Q8N2Y8 1516 aa19.69■□□□□ 0.74
LINC00963-214ENST00000622680 PRG4Q92954 1404 aaPredicted RBP19.59■□□□□ 0.73
LINC00963-214ENST00000622680 CUL7Q14999 1698 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms