RNA–Protein interactions for RNA: ENST00000622656.1

PCDHGC3-207, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3

Gene PCDHGC3, Length 632 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-207ENST00000622656 NISCHQ9Y2I1 1504 aa25.31■■□□□ 1.64
PCDHGC3-207ENST00000622656 CCDC180Q9P1Z9 1646 aa22.6■■□□□ 1.21
PCDHGC3-207ENST00000622656 ABCC9O60706 1549 aa22.44■■□□□ 1.18
PCDHGC3-207ENST00000622656 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.01
PCDHGC3-207ENST00000622656 NACADO15069 1562 aa21.28■■□□□ 1
PCDHGC3-207ENST00000622656 DCAF8L2P0C7V8 631 aa21.25■□□□□ 0.99
PCDHGC3-207ENST00000622656 UNC13AQ9UPW8 1703 aa21.07■□□□□ 0.96
PCDHGC3-207ENST00000622656 ZCCHC6Q5VYS8 1495 aaKnown RBP21.03■□□□□ 0.96
PCDHGC3-207ENST00000622656 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
PCDHGC3-207ENST00000622656 PABPN1Q86U42 306 aaKnown RBP eCLIP20.93■□□□□ 0.94
PCDHGC3-207ENST00000622656 DNAJC5BQ9UF47 199 aa20.91■□□□□ 0.94
PCDHGC3-207ENST00000622656 DCAF1Q9Y4B6 1507 aa20.87■□□□□ 0.93
PCDHGC3-207ENST00000622656 BICRAQ9NZM4 1560 aa20.86■□□□□ 0.93
PCDHGC3-207ENST00000622656 SCRIBQ14160 1630 aa20.67■□□□□ 0.9
PCDHGC3-207ENST00000622656 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
PCDHGC3-207ENST00000622656 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
PCDHGC3-207ENST00000622656 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
PCDHGC3-207ENST00000622656 CECR2Q9BXF3 1484 aa20.14■□□□□ 0.81
PCDHGC3-207ENST00000622656 SMARCA4P51532 1647 aa19.73■□□□□ 0.75
PCDHGC3-207ENST00000622656 NCAPD3P42695 1498 aa19.66■□□□□ 0.74
PCDHGC3-207ENST00000622656 ATAD2BQ9ULI0 1458 aa19.66■□□□□ 0.74
PCDHGC3-207ENST00000622656 BAZ1AQ9NRL2 1556 aaPredicted RBP19.6■□□□□ 0.73
PCDHGC3-207ENST00000622656 SMARCA2P51531 1590 aa19.57■□□□□ 0.72
PCDHGC3-207ENST00000622656 MROH2BQ7Z745 1585 aa19.56■□□□□ 0.72
PCDHGC3-207ENST00000622656 HMGXB3Q12766 1538 aa19.53■□□□□ 0.72
PCDHGC3-207ENST00000622656 PEG3Q9GZU2 1588 aa19.49■□□□□ 0.71
PCDHGC3-207ENST00000622656 BAZ1BQ9UIG0 1483 aaKnown RBP19.45■□□□□ 0.7
PCDHGC3-207ENST00000622656 DNAJC5Q9H3Z4 198 aa19.43■□□□□ 0.7
PCDHGC3-207ENST00000622656 NESP48681 1621 aa19.38■□□□□ 0.69
PCDHGC3-207ENST00000622656 WIZO95785 1651 aa19.36■□□□□ 0.69
PCDHGC3-207ENST00000622656 ERCC6Q03468 1493 aa19.28■□□□□ 0.68
PCDHGC3-207ENST00000622656 RSF1Q96T23 1441 aaPredicted RBP19.19■□□□□ 0.66
PCDHGC3-207ENST00000622656 LAMC3Q9Y6N6 1575 aa19.19■□□□□ 0.66
PCDHGC3-207ENST00000622656 CUX2O14529 1486 aa19.16■□□□□ 0.66
PCDHGC3-207ENST00000622656 KIF21AQ7Z4S6 1674 aa19.15■□□□□ 0.66
PCDHGC3-207ENST00000622656 THOC2Q8NI27 1593 aaKnown RBP19.11■□□□□ 0.65
PCDHGC3-207ENST00000622656 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
PCDHGC3-207ENST00000622656 TOP2AP11388 1531 aaKnown RBP19.05■□□□□ 0.64
PCDHGC3-207ENST00000622656 PDS5BQ9NTI5 1447 aa19.01■□□□□ 0.63
PCDHGC3-207ENST00000622656 CFTRP13569 1480 aa18.9■□□□□ 0.62
PCDHGC3-207ENST00000622656 MRC2Q9UBG0 1479 aa18.89■□□□□ 0.61
PCDHGC3-207ENST00000622656 FANCD2Q9BXW9 1451 aa18.87■□□□□ 0.61
PCDHGC3-207ENST00000622656 CCDC88BA6NC98 1476 aa18.86■□□□□ 0.61
PCDHGC3-207ENST00000622656 WDR62O43379 1518 aa18.85■□□□□ 0.61
PCDHGC3-207ENST00000622656 CEP164Q9UPV0 1460 aa18.85■□□□□ 0.61
PCDHGC3-207ENST00000622656 PRDM2Q13029 1718 aa18.81■□□□□ 0.6
PCDHGC3-207ENST00000622656 URB2Q14146 1524 aaKnown RBP18.75■□□□□ 0.59
PCDHGC3-207ENST00000622656 TOPBP1Q92547 1522 aa18.56■□□□□ 0.56
PCDHGC3-207ENST00000622656 SUPT5HO00267 1087 aaKnown RBP18.51■□□□□ 0.55
PCDHGC3-207ENST00000622656 DNMBPQ6XZF7 1577 aa18.5■□□□□ 0.55
PCDHGC3-207ENST00000622656 ZNF608Q9ULD9 1512 aaPredicted RBP18.49■□□□□ 0.55
PCDHGC3-207ENST00000622656 IFT140Q96RY7 1462 aa18.45■□□□□ 0.54
PCDHGC3-207ENST00000622656 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
PCDHGC3-207ENST00000622656 TARBP1Q13395 1621 aaKnown RBP18.41■□□□□ 0.54
PCDHGC3-207ENST00000622656 POLA1P09884 1462 aaPredicted RBP18.39■□□□□ 0.53
PCDHGC3-207ENST00000622656 EIF4G3O43432 1585 aaKnown RBP18.38■□□□□ 0.53
PCDHGC3-207ENST00000622656 CUX1P39880 1505 aa18.35■□□□□ 0.53
PCDHGC3-207ENST00000622656 RAD54L2Q9Y4B4 1467 aa18.35■□□□□ 0.53
PCDHGC3-207ENST00000622656 TRIM41Q8WV44 630 aa18.34■□□□□ 0.53
PCDHGC3-207ENST00000622656 AQRO60306 1485 aaKnown RBP eCLIP18.33■□□□□ 0.53
PCDHGC3-207ENST00000622656 OSCARQ8IYS5 282 aa18.31■□□□□ 0.52
PCDHGC3-207ENST00000622656 FGD5Q6ZNL6 1462 aa18.3■□□□□ 0.52
PCDHGC3-207ENST00000622656 SOGA1O94964 1423 aa18.27■□□□□ 0.52
PCDHGC3-207ENST00000622656 CHD1O14646 1710 aa18.26■□□□□ 0.51
PCDHGC3-207ENST00000622656 TDRD9Q8NDG6 1382 aaKnown RBP18.25■□□□□ 0.51
PCDHGC3-207ENST00000622656 WDR97A6NE52 1622 aa18.21■□□□□ 0.51
PCDHGC3-207ENST00000622656 RIMBP3CA6NJZ7 1639 aa18.16■□□□□ 0.5
PCDHGC3-207ENST00000622656 RIMBP3BA6NNM3 1639 aa18.16■□□□□ 0.5
PCDHGC3-207ENST00000622656 RIMBP3Q9UFD9 1639 aa18.16■□□□□ 0.5
PCDHGC3-207ENST00000622656 SNAPC4Q5SXM2 1469 aa18.14■□□□□ 0.49
PCDHGC3-207ENST00000622656 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
PCDHGC3-207ENST00000622656 FBLN2P98095 1184 aa18.12■□□□□ 0.49
PCDHGC3-207ENST00000622656 PBRM1Q86U86 1689 aa18.12■□□□□ 0.49
PCDHGC3-207ENST00000622656 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
PCDHGC3-207ENST00000622656 ARHGEF11O15085 1522 aa18.09■□□□□ 0.49
PCDHGC3-207ENST00000622656 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
PCDHGC3-207ENST00000622656 ABCA5Q8WWZ7 1642 aa18.08■□□□□ 0.48
PCDHGC3-207ENST00000622656 ABCA10Q8WWZ4 1543 aa18.08■□□□□ 0.48
PCDHGC3-207ENST00000622656 GRIN2BQ13224 1484 aa18.07■□□□□ 0.48
PCDHGC3-207ENST00000622656 WRNQ14191 1432 aaPredicted RBP eCLIP18.06■□□□□ 0.48
PCDHGC3-207ENST00000622656 GAPVD1Q14C86 1478 aa18.06■□□□□ 0.48
PCDHGC3-207ENST00000622656 MAGI1Q96QZ7 1491 aaPredicted RBP18.04■□□□□ 0.48
PCDHGC3-207ENST00000622656 CLASP1Q7Z460 1538 aa18■□□□□ 0.47
PCDHGC3-207ENST00000622656 SYNJ2O15056 1496 aa17.99■□□□□ 0.47
PCDHGC3-207ENST00000622656 CHMP7Q8WUX9 453 aaPredicted RBP17.98■□□□□ 0.47
PCDHGC3-207ENST00000622656 ARAP1Q96P48 1450 aa17.95■□□□□ 0.46
PCDHGC3-207ENST00000622656 CYB5RLQ6IPT4 315 aa17.92■□□□□ 0.46
PCDHGC3-207ENST00000622656 ADAMTS12P58397 1594 aa17.91■□□□□ 0.46
PCDHGC3-207ENST00000622656 GRIN2AQ12879 1464 aa17.87■□□□□ 0.45
PCDHGC3-207ENST00000622656 CEP170Q5SW79 1584 aa17.85■□□□□ 0.45
PCDHGC3-207ENST00000622656 ERICH3Q5RHP9 1530 aa17.84■□□□□ 0.45
PCDHGC3-207ENST00000622656 FHAD1B1AJZ9 1412 aa17.81■□□□□ 0.44
PCDHGC3-207ENST00000622656 ERCC6L2Q5T890 1561 aa17.81■□□□□ 0.44
PCDHGC3-207ENST00000622656 NUP160Q12769 1436 aa17.8■□□□□ 0.44
PCDHGC3-207ENST00000622656 SHROOM2Q13796 1616 aa17.73■□□□□ 0.43
PCDHGC3-207ENST00000622656 IGF1RP08069 1367 aa17.69■□□□□ 0.42
PCDHGC3-207ENST00000622656 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
PCDHGC3-207ENST00000622656 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
PCDHGC3-207ENST00000622656 CUL7Q14999 1698 aa17.64■□□□□ 0.42
PCDHGC3-207ENST00000622656 TRHP20396 242 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms