RNA–Protein interactions for RNA: ENST00000622209.4

PMPCA-212, Transcript of peptidase, mitochondrial processing alpha subunit, humanhuman

TSL 1 (best)

Gene PMPCA, Length 1,013 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMPCA-212ENST00000622209 NISCHQ9Y2I1 1504 aa51.91■■■■■ 5.9
PMPCA-212ENST00000622209 ABCC9O60706 1549 aa46.53■■■■■ 5.04
PMPCA-212ENST00000622209 CCDC180Q9P1Z9 1646 aa46.36■■■■■ 5.01
PMPCA-212ENST00000622209 RB1CC1Q8TDY2 1594 aa44.18■■■■■ 4.66
PMPCA-212ENST00000622209 DCAF8L2P0C7V8 631 aa44.06■■■■■ 4.64
PMPCA-212ENST00000622209 NACADO15069 1562 aa43.91■■■■■ 4.62
PMPCA-212ENST00000622209 DNAJC5BQ9UF47 199 aa43.64■■■■■ 4.58
PMPCA-212ENST00000622209 PABPN1Q86U42 306 aaKnown RBP eCLIP43.46■■■■■ 4.55
PMPCA-212ENST00000622209 MYO15BQ96JP2 1530 aa43.3■■■■■ 4.52
PMPCA-212ENST00000622209 UNC13AQ9UPW8 1703 aa43.04■■■■■ 4.48
PMPCA-212ENST00000622209 ZCCHC6Q5VYS8 1495 aaKnown RBP43.01■■■■■ 4.48
PMPCA-212ENST00000622209 BICRAQ9NZM4 1560 aa42.9■■■■■ 4.46
PMPCA-212ENST00000622209 DCAF1Q9Y4B6 1507 aa42.81■■■■■ 4.44
PMPCA-212ENST00000622209 SCRIBQ14160 1630 aa42.42■■■■■ 4.38
PMPCA-212ENST00000622209 SHROOM4Q9ULL8 1493 aa42.26■■■■■ 4.36
PMPCA-212ENST00000622209 CC2D2AQ9P2K1 1620 aa41.91■■■■■ 4.3
PMPCA-212ENST00000622209 CECR2Q9BXF3 1484 aa41.86■■■■■ 4.29
PMPCA-212ENST00000622209 EIF4G1Q04637 1599 aaKnown RBP41.85■■■■■ 4.29
PMPCA-212ENST00000622209 NCAPD3P42695 1498 aa40.61■■■■■ 4.09
PMPCA-212ENST00000622209 ATAD2BQ9ULI0 1458 aa40.51■■■■■ 4.08
PMPCA-212ENST00000622209 SMARCA4P51532 1647 aa40.41■■■■■ 4.06
PMPCA-212ENST00000622209 SMARCA2P51531 1590 aa40.34■■■■■ 4.05
PMPCA-212ENST00000622209 BAZ1AQ9NRL2 1556 aaPredicted RBP40.25■■■■■ 4.03
PMPCA-212ENST00000622209 HMGXB3Q12766 1538 aa40.22■■■■■ 4.03
PMPCA-212ENST00000622209 ERCC6Q03468 1493 aa40.14■■■■■ 4.02
PMPCA-212ENST00000622209 BAZ1BQ9UIG0 1483 aaKnown RBP40.13■■■■■ 4.01
PMPCA-212ENST00000622209 MROH2BQ7Z745 1585 aa40.03■■■■■ 4
PMPCA-212ENST00000622209 NESP48681 1621 aa39.98■■■■□ 3.99
PMPCA-212ENST00000622209 PEG3Q9GZU2 1588 aa39.98■■■■□ 3.99
PMPCA-212ENST00000622209 DNAJC5Q9H3Z4 198 aa39.95■■■■□ 3.99
PMPCA-212ENST00000622209 CUX2O14529 1486 aa39.94■■■■□ 3.98
PMPCA-212ENST00000622209 LAMC3Q9Y6N6 1575 aa39.59■■■■□ 3.93
PMPCA-212ENST00000622209 WIZO95785 1651 aa39.5■■■■□ 3.91
PMPCA-212ENST00000622209 PDS5BQ9NTI5 1447 aa39.48■■■■□ 3.91
PMPCA-212ENST00000622209 CADPSQ9ULU8 1353 aa39.44■■■■□ 3.9
PMPCA-212ENST00000622209 THOC2Q8NI27 1593 aaKnown RBP39.4■■■■□ 3.9
PMPCA-212ENST00000622209 KIF21AQ7Z4S6 1674 aa39.3■■■■□ 3.88
PMPCA-212ENST00000622209 RSF1Q96T23 1441 aaPredicted RBP39.29■■■■□ 3.88
PMPCA-212ENST00000622209 MRC2Q9UBG0 1479 aa39.09■■■■□ 3.85
PMPCA-212ENST00000622209 TOP2AP11388 1531 aaKnown RBP39■■■■□ 3.83
PMPCA-212ENST00000622209 FANCD2Q9BXW9 1451 aa38.96■■■■□ 3.83
PMPCA-212ENST00000622209 CEP164Q9UPV0 1460 aa38.96■■■■□ 3.83
PMPCA-212ENST00000622209 CFTRP13569 1480 aa38.95■■■■□ 3.83
PMPCA-212ENST00000622209 WDR62O43379 1518 aa38.93■■■■□ 3.82
PMPCA-212ENST00000622209 CCDC88BA6NC98 1476 aa38.66■■■■□ 3.78
PMPCA-212ENST00000622209 URB2Q14146 1524 aaKnown RBP38.62■■■■□ 3.77
PMPCA-212ENST00000622209 TRIM41Q8WV44 630 aa38.33■■■■□ 3.73
PMPCA-212ENST00000622209 PRDM2Q13029 1718 aa38.3■■■■□ 3.72
PMPCA-212ENST00000622209 OSCARQ8IYS5 282 aa38.3■■■■□ 3.72
PMPCA-212ENST00000622209 TOPBP1Q92547 1522 aa38.21■■■■□ 3.71
PMPCA-212ENST00000622209 IFT140Q96RY7 1462 aa38.19■■■■□ 3.7
PMPCA-212ENST00000622209 ZNF608Q9ULD9 1512 aaPredicted RBP38.16■■■■□ 3.7
PMPCA-212ENST00000622209 ABCC8Q09428 1581 aa38.1■■■■□ 3.69
PMPCA-212ENST00000622209 DNMBPQ6XZF7 1577 aa38.02■■■■□ 3.68
PMPCA-212ENST00000622209 AQRO60306 1485 aaKnown RBP eCLIP37.87■■■■□ 3.657e-8■■■□□ 17.6
PMPCA-212ENST00000622209 EIF4G3O43432 1585 aaKnown RBP37.83■■■■□ 3.65
PMPCA-212ENST00000622209 POLA1P09884 1462 aaPredicted RBP37.83■■■■□ 3.65
PMPCA-212ENST00000622209 SUPT5HO00267 1087 aaKnown RBP37.81■■■■□ 3.64
PMPCA-212ENST00000622209 TARBP1Q13395 1621 aaKnown RBP37.79■■■■□ 3.64
PMPCA-212ENST00000622209 RAD54L2Q9Y4B4 1467 aa37.76■■■■□ 3.63
PMPCA-212ENST00000622209 SOGA1O94964 1423 aa37.74■■■■□ 3.63
PMPCA-212ENST00000622209 FBLN2P98095 1184 aa37.7■■■■□ 3.63
PMPCA-212ENST00000622209 TDRD9Q8NDG6 1382 aaKnown RBP37.68■■■■□ 3.62
PMPCA-212ENST00000622209 RIMBP3CA6NJZ7 1639 aa37.62■■■■□ 3.61
PMPCA-212ENST00000622209 RIMBP3BA6NNM3 1639 aa37.62■■■■□ 3.61
PMPCA-212ENST00000622209 RIMBP3Q9UFD9 1639 aa37.62■■■■□ 3.61
PMPCA-212ENST00000622209 FGD5Q6ZNL6 1462 aa37.62■■■■□ 3.61
PMPCA-212ENST00000622209 CUX1P39880 1505 aa37.59■■■■□ 3.61
PMPCA-212ENST00000622209 ARHGEF11O15085 1522 aa37.56■■■■□ 3.6
PMPCA-212ENST00000622209 CHD1O14646 1710 aa37.48■■■■□ 3.59
PMPCA-212ENST00000622209 CYB5RLQ6IPT4 315 aa37.45■■■■□ 3.59
PMPCA-212ENST00000622209 SNAPC4Q5SXM2 1469 aa37.42■■■■□ 3.58
PMPCA-212ENST00000622209 CHMP7Q8WUX9 453 aaPredicted RBP37.4■■■■□ 3.58
PMPCA-212ENST00000622209 GRIN2BQ13224 1484 aa37.33■■■■□ 3.57
PMPCA-212ENST00000622209 WDR97A6NE52 1622 aa37.33■■■■□ 3.57
PMPCA-212ENST00000622209 MAGI1Q96QZ7 1491 aaPredicted RBP37.27■■■■□ 3.56
PMPCA-212ENST00000622209 GAPVD1Q14C86 1478 aa37.23■■■■□ 3.55
PMPCA-212ENST00000622209 ARAP1Q96P48 1450 aa37.21■■■■□ 3.55
PMPCA-212ENST00000622209 SYNJ2O15056 1496 aa37.18■■■■□ 3.54
PMPCA-212ENST00000622209 ABCA10Q8WWZ4 1543 aa37.17■■■■□ 3.54
PMPCA-212ENST00000622209 CLASP1Q7Z460 1538 aa37.12■■■■□ 3.53
PMPCA-212ENST00000622209 WRNQ14191 1432 aaPredicted RBP eCLIP37.11■■■■□ 3.53
PMPCA-212ENST00000622209 SYNJ1O43426 1573 aa37.11■■■■□ 3.53
PMPCA-212ENST00000622209 PBRM1Q86U86 1689 aa37.03■■■■□ 3.52
PMPCA-212ENST00000622209 ABCA5Q8WWZ7 1642 aa37.03■■■■□ 3.52
PMPCA-212ENST00000622209 TRHP20396 242 aaPredicted RBP37.02■■■■□ 3.52
PMPCA-212ENST00000622209 TOP2BQ02880 1626 aa36.96■■■■□ 3.51
PMPCA-212ENST00000622209 BIVM-ERCC5R4GMW8 1640 aa36.9■■■■□ 3.5
PMPCA-212ENST00000622209 GRIN2AQ12879 1464 aa36.83■■■■□ 3.49
PMPCA-212ENST00000622209 FHAD1B1AJZ9 1412 aa36.76■■■■□ 3.48
PMPCA-212ENST00000622209 ADAMTS12P58397 1594 aa36.76■■■■□ 3.48
PMPCA-212ENST00000622209 NUP160Q12769 1436 aa36.7■■■■□ 3.47
PMPCA-212ENST00000622209 CEP170Q5SW79 1584 aa36.67■■■■□ 3.46
PMPCA-212ENST00000622209 ERICH3Q5RHP9 1530 aa36.67■■■■□ 3.46
PMPCA-212ENST00000622209 ERCC6L2Q5T890 1561 aa36.62■■■■□ 3.45
PMPCA-212ENST00000622209 JPH4Q96JJ6 628 aa36.46■■■■□ 3.43
PMPCA-212ENST00000622209 SHROOM2Q13796 1616 aa36.43■■■■□ 3.42
PMPCA-212ENST00000622209 PRG4Q92954 1404 aaPredicted RBP36.42■■■■□ 3.42
PMPCA-212ENST00000622209 IGF1RP08069 1367 aa36.38■■■■□ 3.41
PMPCA-212ENST00000622209 KIF27Q86VH2 1401 aa36.34■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms