RNA–Protein interactions for RNA: ENST00000621757.1

COL8A1-208, Transcript of collagen type VIII alpha 1 chain, humanhuman

TSL 3

Gene COL8A1, Length 948 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-208ENST00000621757 NISCHQ9Y2I1 1504 aa29.39■■■□□ 2.3
COL8A1-208ENST00000621757 CCDC180Q9P1Z9 1646 aa26.18■■□□□ 1.78
COL8A1-208ENST00000621757 ABCC9O60706 1549 aa25.61■■□□□ 1.69
COL8A1-208ENST00000621757 RB1CC1Q8TDY2 1594 aa24.62■■□□□ 1.53
COL8A1-208ENST00000621757 NACADO15069 1562 aa24.57■■□□□ 1.52
COL8A1-208ENST00000621757 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
COL8A1-208ENST00000621757 DCAF8L2P0C7V8 631 aa24.47■■□□□ 1.51
COL8A1-208ENST00000621757 MYO15BQ96JP2 1530 aa24.41■■□□□ 1.5
COL8A1-208ENST00000621757 DCAF1Q9Y4B6 1507 aa24.31■■□□□ 1.48
COL8A1-208ENST00000621757 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
COL8A1-208ENST00000621757 UNC13AQ9UPW8 1703 aa24.12■■□□□ 1.45
COL8A1-208ENST00000621757 SCRIBQ14160 1630 aa23.9■■□□□ 1.42
COL8A1-208ENST00000621757 BICRAQ9NZM4 1560 aa23.89■■□□□ 1.41
COL8A1-208ENST00000621757 PABPN1Q86U42 306 aaKnown RBP eCLIP23.86■■□□□ 1.41
COL8A1-208ENST00000621757 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
COL8A1-208ENST00000621757 EIF4G1Q04637 1599 aaKnown RBP23.26■■□□□ 1.31
COL8A1-208ENST00000621757 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
COL8A1-208ENST00000621757 CECR2Q9BXF3 1484 aa23.06■■□□□ 1.28
COL8A1-208ENST00000621757 SMARCA4P51532 1647 aa22.84■■□□□ 1.25
COL8A1-208ENST00000621757 BAZ1AQ9NRL2 1556 aaPredicted RBP22.79■■□□□ 1.24
COL8A1-208ENST00000621757 ATAD2BQ9ULI0 1458 aa22.68■■□□□ 1.22
COL8A1-208ENST00000621757 SMARCA2P51531 1590 aa22.67■■□□□ 1.22
COL8A1-208ENST00000621757 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
COL8A1-208ENST00000621757 NCAPD3P42695 1498 aa22.65■■□□□ 1.22
COL8A1-208ENST00000621757 PEG3Q9GZU2 1588 aa22.6■■□□□ 1.21
COL8A1-208ENST00000621757 HMGXB3Q12766 1538 aa22.59■■□□□ 1.21
COL8A1-208ENST00000621757 BAZ1BQ9UIG0 1483 aaKnown RBP22.51■■□□□ 1.19
COL8A1-208ENST00000621757 WIZO95785 1651 aa22.44■■□□□ 1.18
COL8A1-208ENST00000621757 RSF1Q96T23 1441 aaPredicted RBP22.37■■□□□ 1.17
COL8A1-208ENST00000621757 DNAJC5Q9H3Z4 198 aa22.23■■□□□ 1.15
COL8A1-208ENST00000621757 TOP2AP11388 1531 aaKnown RBP22.2■■□□□ 1.14
COL8A1-208ENST00000621757 NESP48681 1621 aa22.15■■□□□ 1.14
COL8A1-208ENST00000621757 ERCC6Q03468 1493 aa22.09■■□□□ 1.13
COL8A1-208ENST00000621757 LAMC3Q9Y6N6 1575 aa22.08■■□□□ 1.13
COL8A1-208ENST00000621757 CUX2O14529 1486 aa22.07■■□□□ 1.12
COL8A1-208ENST00000621757 CADPSQ9ULU8 1353 aa21.98■■□□□ 1.11
COL8A1-208ENST00000621757 KIF21AQ7Z4S6 1674 aa21.93■■□□□ 1.1
COL8A1-208ENST00000621757 CCDC88BA6NC98 1476 aa21.9■■□□□ 1.1
COL8A1-208ENST00000621757 PDS5BQ9NTI5 1447 aa21.89■■□□□ 1.1
COL8A1-208ENST00000621757 CFTRP13569 1480 aa21.87■■□□□ 1.09
COL8A1-208ENST00000621757 THOC2Q8NI27 1593 aaKnown RBP21.87■■□□□ 1.09
COL8A1-208ENST00000621757 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
COL8A1-208ENST00000621757 FANCD2Q9BXW9 1451 aa21.77■■□□□ 1.07
COL8A1-208ENST00000621757 SUPT5HO00267 1087 aaKnown RBP21.75■■□□□ 1.07
COL8A1-208ENST00000621757 CEP164Q9UPV0 1460 aa21.75■■□□□ 1.07
COL8A1-208ENST00000621757 MRC2Q9UBG0 1479 aa21.72■■□□□ 1.07
COL8A1-208ENST00000621757 WDR62O43379 1518 aa21.67■■□□□ 1.06
COL8A1-208ENST00000621757 URB2Q14146 1524 aaKnown RBP21.56■■□□□ 1.04
COL8A1-208ENST00000621757 TOPBP1Q92547 1522 aa21.42■■□□□ 1.02
COL8A1-208ENST00000621757 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
COL8A1-208ENST00000621757 ABCC8Q09428 1581 aa21.37■■□□□ 1.01
COL8A1-208ENST00000621757 IFT140Q96RY7 1462 aa21.27■■□□□ 1
COL8A1-208ENST00000621757 CUX1P39880 1505 aa21.27■■□□□ 1
COL8A1-208ENST00000621757 POLA1P09884 1462 aaPredicted RBP21.25■□□□□ 0.99
COL8A1-208ENST00000621757 TRIM41Q8WV44 630 aa21.23■□□□□ 0.99
COL8A1-208ENST00000621757 TARBP1Q13395 1621 aaKnown RBP21.21■□□□□ 0.99
COL8A1-208ENST00000621757 ZNF608Q9ULD9 1512 aaPredicted RBP21.2■□□□□ 0.98
COL8A1-208ENST00000621757 FGD5Q6ZNL6 1462 aa21.2■□□□□ 0.98
COL8A1-208ENST00000621757 EIF4G3O43432 1585 aaKnown RBP21.16■□□□□ 0.98
COL8A1-208ENST00000621757 RAD54L2Q9Y4B4 1467 aa21.14■□□□□ 0.98
COL8A1-208ENST00000621757 SOGA1O94964 1423 aa21.11■□□□□ 0.97
COL8A1-208ENST00000621757 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
COL8A1-208ENST00000621757 BIVM-ERCC5R4GMW8 1640 aa21.1■□□□□ 0.97
COL8A1-208ENST00000621757 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
COL8A1-208ENST00000621757 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
COL8A1-208ENST00000621757 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
COL8A1-208ENST00000621757 OSCARQ8IYS5 282 aa21.06■□□□□ 0.96
COL8A1-208ENST00000621757 AQRO60306 1485 aaKnown RBP eCLIP21.05■□□□□ 0.96
COL8A1-208ENST00000621757 TDRD9Q8NDG6 1382 aaKnown RBP20.99■□□□□ 0.95
COL8A1-208ENST00000621757 ABCA10Q8WWZ4 1543 aa20.98■□□□□ 0.95
COL8A1-208ENST00000621757 ABCA5Q8WWZ7 1642 aa20.94■□□□□ 0.94
COL8A1-208ENST00000621757 PBRM1Q86U86 1689 aa20.92■□□□□ 0.94
COL8A1-208ENST00000621757 CHD1O14646 1710 aa20.9■□□□□ 0.94
COL8A1-208ENST00000621757 GAPVD1Q14C86 1478 aa20.89■□□□□ 0.94
COL8A1-208ENST00000621757 SNAPC4Q5SXM2 1469 aa20.89■□□□□ 0.94
COL8A1-208ENST00000621757 GRIN2BQ13224 1484 aa20.88■□□□□ 0.93
COL8A1-208ENST00000621757 MAGI1Q96QZ7 1491 aaPredicted RBP20.85■□□□□ 0.93
COL8A1-208ENST00000621757 RIMBP3CA6NJZ7 1639 aa20.78■□□□□ 0.92
COL8A1-208ENST00000621757 RIMBP3BA6NNM3 1639 aa20.78■□□□□ 0.92
COL8A1-208ENST00000621757 RIMBP3Q9UFD9 1639 aa20.78■□□□□ 0.92
COL8A1-208ENST00000621757 SYNJ2O15056 1496 aa20.76■□□□□ 0.91
COL8A1-208ENST00000621757 FBLN2P98095 1184 aa20.76■□□□□ 0.91
COL8A1-208ENST00000621757 ADAMTS12P58397 1594 aa20.75■□□□□ 0.91
COL8A1-208ENST00000621757 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
COL8A1-208ENST00000621757 ERICH3Q5RHP9 1530 aa20.73■□□□□ 0.91
COL8A1-208ENST00000621757 CHMP7Q8WUX9 453 aaPredicted RBP20.69■□□□□ 0.9
COL8A1-208ENST00000621757 CLASP1Q7Z460 1538 aa20.65■□□□□ 0.9
COL8A1-208ENST00000621757 GRIN2AQ12879 1464 aa20.64■□□□□ 0.89
COL8A1-208ENST00000621757 FHAD1B1AJZ9 1412 aa20.64■□□□□ 0.89
COL8A1-208ENST00000621757 KIF27Q86VH2 1401 aa20.64■□□□□ 0.89
COL8A1-208ENST00000621757 CYB5RLQ6IPT4 315 aa20.6■□□□□ 0.89
COL8A1-208ENST00000621757 CEP170Q5SW79 1584 aa20.57■□□□□ 0.88
COL8A1-208ENST00000621757 CUL7Q14999 1698 aa20.57■□□□□ 0.88
COL8A1-208ENST00000621757 ARAP1Q96P48 1450 aa20.55■□□□□ 0.88
COL8A1-208ENST00000621757 NUP160Q12769 1436 aa20.54■□□□□ 0.88
COL8A1-208ENST00000621757 IGF1RP08069 1367 aa20.54■□□□□ 0.88
COL8A1-208ENST00000621757 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
COL8A1-208ENST00000621757 CARMIL1Q5VZK9 1371 aa20.42■□□□□ 0.86
COL8A1-208ENST00000621757 SHROOM2Q13796 1616 aa20.42■□□□□ 0.86
COL8A1-208ENST00000621757 TRHP20396 242 aaPredicted RBP20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms