RNA–Protein interactions for RNA: ENST00000621008.1

PCDHGC3-206, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 2

Gene PCDHGC3, Length 845 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-206ENST00000621008 NISCHQ9Y2I1 1504 aa31.27■■■□□ 2.6
PCDHGC3-206ENST00000621008 CCDC180Q9P1Z9 1646 aa27.87■■■□□ 2.05
PCDHGC3-206ENST00000621008 ABCC9O60706 1549 aa27■■□□□ 1.91
PCDHGC3-206ENST00000621008 NACADO15069 1562 aa26.2■■□□□ 1.78
PCDHGC3-206ENST00000621008 RB1CC1Q8TDY2 1594 aa26.18■■□□□ 1.78
PCDHGC3-206ENST00000621008 MYO15BQ96JP2 1530 aa26.15■■□□□ 1.78
PCDHGC3-206ENST00000621008 ZCCHC6Q5VYS8 1495 aaKnown RBP26.05■■□□□ 1.76
PCDHGC3-206ENST00000621008 DCAF1Q9Y4B6 1507 aa26.01■■□□□ 1.75
PCDHGC3-206ENST00000621008 DCAF8L2P0C7V8 631 aa25.96■■□□□ 1.75
PCDHGC3-206ENST00000621008 UNC13AQ9UPW8 1703 aa25.48■■□□□ 1.67
PCDHGC3-206ENST00000621008 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
PCDHGC3-206ENST00000621008 SHROOM4Q9ULL8 1493 aa25.27■■□□□ 1.64
PCDHGC3-206ENST00000621008 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
PCDHGC3-206ENST00000621008 PABPN1Q86U42 306 aaKnown RBP eCLIP25.2■■□□□ 1.62
PCDHGC3-206ENST00000621008 DNAJC5BQ9UF47 199 aa24.69■■□□□ 1.54
PCDHGC3-206ENST00000621008 EIF4G1Q04637 1599 aaKnown RBP24.63■■□□□ 1.53
PCDHGC3-206ENST00000621008 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
PCDHGC3-206ENST00000621008 CECR2Q9BXF3 1484 aa24.34■■□□□ 1.49
PCDHGC3-206ENST00000621008 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
PCDHGC3-206ENST00000621008 SMARCA4P51532 1647 aa24.24■■□□□ 1.47
PCDHGC3-206ENST00000621008 SMARCA2P51531 1590 aa24.15■■□□□ 1.46
PCDHGC3-206ENST00000621008 NCAPD3P42695 1498 aa24.14■■□□□ 1.46
PCDHGC3-206ENST00000621008 ATAD2BQ9ULI0 1458 aa24.1■■□□□ 1.45
PCDHGC3-206ENST00000621008 PEG3Q9GZU2 1588 aa24.09■■□□□ 1.45
PCDHGC3-206ENST00000621008 HMGXB3Q12766 1538 aa24.04■■□□□ 1.44
PCDHGC3-206ENST00000621008 MROH2BQ7Z745 1585 aa24.01■■□□□ 1.43
PCDHGC3-206ENST00000621008 BAZ1BQ9UIG0 1483 aaKnown RBP23.9■■□□□ 1.42
PCDHGC3-206ENST00000621008 RSF1Q96T23 1441 aaPredicted RBP23.79■■□□□ 1.4
PCDHGC3-206ENST00000621008 WIZO95785 1651 aa23.74■■□□□ 1.39
PCDHGC3-206ENST00000621008 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
PCDHGC3-206ENST00000621008 LAMC3Q9Y6N6 1575 aa23.51■■□□□ 1.35
PCDHGC3-206ENST00000621008 CADPSQ9ULU8 1353 aa23.41■■□□□ 1.34
PCDHGC3-206ENST00000621008 PDS5BQ9NTI5 1447 aa23.36■■□□□ 1.33
PCDHGC3-206ENST00000621008 NESP48681 1621 aa23.36■■□□□ 1.33
PCDHGC3-206ENST00000621008 ERCC6Q03468 1493 aa23.36■■□□□ 1.33
PCDHGC3-206ENST00000621008 CFTRP13569 1480 aa23.29■■□□□ 1.32
PCDHGC3-206ENST00000621008 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
PCDHGC3-206ENST00000621008 CUX2O14529 1486 aa23.2■■□□□ 1.3
PCDHGC3-206ENST00000621008 PRDM2Q13029 1718 aa23.15■■□□□ 1.3
PCDHGC3-206ENST00000621008 KIF21AQ7Z4S6 1674 aa23.14■■□□□ 1.29
PCDHGC3-206ENST00000621008 SUPT5HO00267 1087 aaKnown RBP23.12■■□□□ 1.29
PCDHGC3-206ENST00000621008 FANCD2Q9BXW9 1451 aa23.1■■□□□ 1.29
PCDHGC3-206ENST00000621008 CEP164Q9UPV0 1460 aa23.09■■□□□ 1.29
PCDHGC3-206ENST00000621008 THOC2Q8NI27 1593 aaKnown RBP23.09■■□□□ 1.29
PCDHGC3-206ENST00000621008 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
PCDHGC3-206ENST00000621008 WDR62O43379 1518 aa22.98■■□□□ 1.27
PCDHGC3-206ENST00000621008 ABCC8Q09428 1581 aa22.9■■□□□ 1.26
PCDHGC3-206ENST00000621008 URB2Q14146 1524 aaKnown RBP22.82■■□□□ 1.24
PCDHGC3-206ENST00000621008 DNMBPQ6XZF7 1577 aa22.75■■□□□ 1.23
PCDHGC3-206ENST00000621008 TOPBP1Q92547 1522 aa22.73■■□□□ 1.23
PCDHGC3-206ENST00000621008 IFT140Q96RY7 1462 aa22.64■■□□□ 1.21
PCDHGC3-206ENST00000621008 POLA1P09884 1462 aaPredicted RBP22.54■■□□□ 1.2
PCDHGC3-206ENST00000621008 CUX1P39880 1505 aa22.53■■□□□ 1.2
PCDHGC3-206ENST00000621008 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
PCDHGC3-206ENST00000621008 TARBP1Q13395 1621 aaKnown RBP22.48■■□□□ 1.19
PCDHGC3-206ENST00000621008 SOGA1O94964 1423 aa22.47■■□□□ 1.19
PCDHGC3-206ENST00000621008 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
PCDHGC3-206ENST00000621008 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
PCDHGC3-206ENST00000621008 TOP2BQ02880 1626 aa22.44■■□□□ 1.18
PCDHGC3-206ENST00000621008 BIVM-ERCC5R4GMW8 1640 aa22.43■■□□□ 1.18
PCDHGC3-206ENST00000621008 ZNF608Q9ULD9 1512 aaPredicted RBP22.39■■□□□ 1.17
PCDHGC3-206ENST00000621008 DNAJC5Q9H3Z4 198 aa22.36■■□□□ 1.17
PCDHGC3-206ENST00000621008 EIF4G3O43432 1585 aaKnown RBP22.36■■□□□ 1.17
PCDHGC3-206ENST00000621008 RAD54L2Q9Y4B4 1467 aa22.35■■□□□ 1.17
PCDHGC3-206ENST00000621008 ABCA10Q8WWZ4 1543 aa22.33■■□□□ 1.17
PCDHGC3-206ENST00000621008 SYNJ1O43426 1573 aa22.33■■□□□ 1.16
PCDHGC3-206ENST00000621008 AQRO60306 1485 aaKnown RBP eCLIP22.29■■□□□ 1.16
PCDHGC3-206ENST00000621008 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
PCDHGC3-206ENST00000621008 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
PCDHGC3-206ENST00000621008 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
PCDHGC3-206ENST00000621008 OSCARQ8IYS5 282 aa22.21■■□□□ 1.15
PCDHGC3-206ENST00000621008 ABCA5Q8WWZ7 1642 aa22.2■■□□□ 1.15
PCDHGC3-206ENST00000621008 MAGI1Q96QZ7 1491 aaPredicted RBP22.2■■□□□ 1.14
PCDHGC3-206ENST00000621008 PBRM1Q86U86 1689 aa22.14■■□□□ 1.13
PCDHGC3-206ENST00000621008 SNAPC4Q5SXM2 1469 aa22.11■■□□□ 1.13
PCDHGC3-206ENST00000621008 ERICH3Q5RHP9 1530 aa22.1■■□□□ 1.13
PCDHGC3-206ENST00000621008 SYNJ2O15056 1496 aa22.08■■□□□ 1.12
PCDHGC3-206ENST00000621008 CHD1O14646 1710 aa22.06■■□□□ 1.12
PCDHGC3-206ENST00000621008 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
PCDHGC3-206ENST00000621008 KIF27Q86VH2 1401 aa22.04■■□□□ 1.12
PCDHGC3-206ENST00000621008 FBLN2P98095 1184 aa22■■□□□ 1.11
PCDHGC3-206ENST00000621008 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
PCDHGC3-206ENST00000621008 ADAMTS12P58397 1594 aa21.96■■□□□ 1.11
PCDHGC3-206ENST00000621008 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
PCDHGC3-206ENST00000621008 GRIN2AQ12879 1464 aa21.91■■□□□ 1.1
PCDHGC3-206ENST00000621008 CUL7Q14999 1698 aa21.91■■□□□ 1.1
PCDHGC3-206ENST00000621008 IGF1RP08069 1367 aa21.89■■□□□ 1.1
PCDHGC3-206ENST00000621008 CLASP1Q7Z460 1538 aa21.86■■□□□ 1.09
PCDHGC3-206ENST00000621008 NUP160Q12769 1436 aa21.84■■□□□ 1.09
PCDHGC3-206ENST00000621008 CARMIL1Q5VZK9 1371 aa21.78■■□□□ 1.08
PCDHGC3-206ENST00000621008 ARHGEF11O15085 1522 aa21.78■■□□□ 1.08
PCDHGC3-206ENST00000621008 RIMBP3CA6NJZ7 1639 aa21.76■■□□□ 1.07
PCDHGC3-206ENST00000621008 RIMBP3BA6NNM3 1639 aa21.76■■□□□ 1.07
PCDHGC3-206ENST00000621008 RIMBP3Q9UFD9 1639 aa21.76■■□□□ 1.07
PCDHGC3-206ENST00000621008 CEP170Q5SW79 1584 aa21.74■■□□□ 1.07
PCDHGC3-206ENST00000621008 EEA1Q15075 1411 aa21.73■■□□□ 1.07
PCDHGC3-206ENST00000621008 RAPGEF2Q9Y4G8 1499 aa21.68■■□□□ 1.06
PCDHGC3-206ENST00000621008 SHROOM2Q13796 1616 aa21.67■■□□□ 1.06
PCDHGC3-206ENST00000621008 KIAA0586Q9BVV6 1533 aa21.67■■□□□ 1.06
PCDHGC3-206ENST00000621008 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms