RNA–Protein interactions for RNA: ENST00000620410.1

PTPRT-212, Transcript of protein tyrosine phosphatase, receptor type T, humanhuman

TSL 5 BASIC

Gene PTPRT, Length 940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRT-212ENST00000620410 NISCHQ9Y2I1 1504 aa28.63■■■□□ 2.17
PTPRT-212ENST00000620410 ABCC9O60706 1549 aa26.36■■□□□ 1.81
PTPRT-212ENST00000620410 CCDC180Q9P1Z9 1646 aa25.95■■□□□ 1.74
PTPRT-212ENST00000620410 DNAJC5BQ9UF47 199 aa25.1■■□□□ 1.61
PTPRT-212ENST00000620410 RB1CC1Q8TDY2 1594 aa24.91■■□□□ 1.58
PTPRT-212ENST00000620410 NACADO15069 1562 aa24.62■■□□□ 1.53
PTPRT-212ENST00000620410 PABPN1Q86U42 306 aaKnown RBP eCLIP24.43■■□□□ 1.5
PTPRT-212ENST00000620410 UNC13AQ9UPW8 1703 aa24.35■■□□□ 1.49
PTPRT-212ENST00000620410 DCAF8L2P0C7V8 631 aa24.32■■□□□ 1.48
PTPRT-212ENST00000620410 BICRAQ9NZM4 1560 aa24.18■■□□□ 1.46
PTPRT-212ENST00000620410 MYO15BQ96JP2 1530 aa24.11■■□□□ 1.45
PTPRT-212ENST00000620410 SHROOM4Q9ULL8 1493 aa23.85■■□□□ 1.41
PTPRT-212ENST00000620410 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
PTPRT-212ENST00000620410 CECR2Q9BXF3 1484 aa23.81■■□□□ 1.4
PTPRT-212ENST00000620410 EIF4G1Q04637 1599 aaKnown RBP23.64■■□□□ 1.37
PTPRT-212ENST00000620410 ZCCHC6Q5VYS8 1495 aaKnown RBP23.63■■□□□ 1.37
PTPRT-212ENST00000620410 DCAF1Q9Y4B6 1507 aa23.63■■□□□ 1.37
PTPRT-212ENST00000620410 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
PTPRT-212ENST00000620410 DNAJC5Q9H3Z4 198 aa23.42■■□□□ 1.34
PTPRT-212ENST00000620410 CUX2O14529 1486 aa22.94■■□□□ 1.26
PTPRT-212ENST00000620410 ERCC6Q03468 1493 aa22.82■■□□□ 1.24
PTPRT-212ENST00000620410 NCAPD3P42695 1498 aa22.71■■□□□ 1.23
PTPRT-212ENST00000620410 ATAD2BQ9ULI0 1458 aa22.58■■□□□ 1.2
PTPRT-212ENST00000620410 HMGXB3Q12766 1538 aa22.53■■□□□ 1.2
PTPRT-212ENST00000620410 SMARCA2P51531 1590 aa22.51■■□□□ 1.19
PTPRT-212ENST00000620410 NESP48681 1621 aa22.5■■□□□ 1.19
PTPRT-212ENST00000620410 SMARCA4P51532 1647 aa22.46■■□□□ 1.19
PTPRT-212ENST00000620410 THOC2Q8NI27 1593 aaKnown RBP22.42■■□□□ 1.18
PTPRT-212ENST00000620410 BAZ1BQ9UIG0 1483 aaKnown RBP22.34■■□□□ 1.17
PTPRT-212ENST00000620410 LAMC3Q9Y6N6 1575 aa22.29■■□□□ 1.16
PTPRT-212ENST00000620410 BAZ1AQ9NRL2 1556 aaPredicted RBP22.27■■□□□ 1.16
PTPRT-212ENST00000620410 KIF21AQ7Z4S6 1674 aa22.24■■□□□ 1.15
PTPRT-212ENST00000620410 PEG3Q9GZU2 1588 aa22.24■■□□□ 1.15
PTPRT-212ENST00000620410 TRIM41Q8WV44 630 aa22.21■■□□□ 1.15
PTPRT-212ENST00000620410 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
PTPRT-212ENST00000620410 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
PTPRT-212ENST00000620410 MRC2Q9UBG0 1479 aa22.03■■□□□ 1.12
PTPRT-212ENST00000620410 WDR62O43379 1518 aa22■■□□□ 1.11
PTPRT-212ENST00000620410 CADPSQ9ULU8 1353 aa21.99■■□□□ 1.11
PTPRT-212ENST00000620410 CEP164Q9UPV0 1460 aa21.84■■□□□ 1.09
PTPRT-212ENST00000620410 WIZO95785 1651 aa21.77■■□□□ 1.08
PTPRT-212ENST00000620410 OSCARQ8IYS5 282 aa21.77■■□□□ 1.08
PTPRT-212ENST00000620410 FANCD2Q9BXW9 1451 aa21.76■■□□□ 1.07
PTPRT-212ENST00000620410 CFTRP13569 1480 aa21.64■■□□□ 1.06
PTPRT-212ENST00000620410 URB2Q14146 1524 aaKnown RBP21.61■■□□□ 1.05
PTPRT-212ENST00000620410 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.05
PTPRT-212ENST00000620410 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.05
PTPRT-212ENST00000620410 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.05
PTPRT-212ENST00000620410 RSF1Q96T23 1441 aaPredicted RBP21.55■■□□□ 1.04
PTPRT-212ENST00000620410 TOP2AP11388 1531 aaKnown RBP21.48■■□□□ 1.03
PTPRT-212ENST00000620410 ARHGEF11O15085 1522 aa21.46■■□□□ 1.03
PTPRT-212ENST00000620410 PRDM2Q13029 1718 aa21.46■■□□□ 1.03
PTPRT-212ENST00000620410 IFT140Q96RY7 1462 aa21.42■■□□□ 1.02
PTPRT-212ENST00000620410 ZNF608Q9ULD9 1512 aaPredicted RBP21.42■■□□□ 1.02
PTPRT-212ENST00000620410 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
PTPRT-212ENST00000620410 TOPBP1Q92547 1522 aa21.29■■□□□ 1
PTPRT-212ENST00000620410 CYB5RLQ6IPT4 315 aa21.29■■□□□ 1
PTPRT-212ENST00000620410 CHD1O14646 1710 aa21.25■□□□□ 0.99
PTPRT-212ENST00000620410 TRHP20396 242 aaPredicted RBP21.22■□□□□ 0.99
PTPRT-212ENST00000620410 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
PTPRT-212ENST00000620410 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
PTPRT-212ENST00000620410 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
PTPRT-212ENST00000620410 DNMBPQ6XZF7 1577 aa21.19■□□□□ 0.98
PTPRT-212ENST00000620410 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
PTPRT-212ENST00000620410 AQRO60306 1485 aaKnown RBP eCLIP21.14■□□□□ 0.98
PTPRT-212ENST00000620410 FBLN2P98095 1184 aa21.1■□□□□ 0.97
PTPRT-212ENST00000620410 POLA1P09884 1462 aaPredicted RBP21.05■□□□□ 0.96
PTPRT-212ENST00000620410 CLASP1Q7Z460 1538 aa20.98■□□□□ 0.95
PTPRT-212ENST00000620410 AEBP2Q6ZN18 517 aaPredicted RBP20.97■□□□□ 0.95
PTPRT-212ENST00000620410 RAD54L2Q9Y4B4 1467 aa20.95■□□□□ 0.94
PTPRT-212ENST00000620410 SNAPC4Q5SXM2 1469 aa20.94■□□□□ 0.94
PTPRT-212ENST00000620410 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
PTPRT-212ENST00000620410 SYNJ1O43426 1573 aa20.93■□□□□ 0.94
PTPRT-212ENST00000620410 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
PTPRT-212ENST00000620410 SOGA1O94964 1423 aa20.92■□□□□ 0.94
PTPRT-212ENST00000620410 MAGI1Q96QZ7 1491 aaPredicted RBP20.88■□□□□ 0.93
PTPRT-212ENST00000620410 CHMP7Q8WUX9 453 aaPredicted RBP20.87■□□□□ 0.93
PTPRT-212ENST00000620410 FGD5Q6ZNL6 1462 aa20.84■□□□□ 0.93
PTPRT-212ENST00000620410 GRIN2BQ13224 1484 aa20.81■□□□□ 0.92
PTPRT-212ENST00000620410 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
PTPRT-212ENST00000620410 GAPVD1Q14C86 1478 aa20.77■□□□□ 0.92
PTPRT-212ENST00000620410 CUX1P39880 1505 aa20.75■□□□□ 0.91
PTPRT-212ENST00000620410 PBRM1Q86U86 1689 aa20.73■□□□□ 0.91
PTPRT-212ENST00000620410 SUPT5HO00267 1087 aaKnown RBP20.71■□□□□ 0.91
PTPRT-212ENST00000620410 ABCA5Q8WWZ7 1642 aa20.62■□□□□ 0.89
PTPRT-212ENST00000620410 ERCC6L2Q5T890 1561 aa20.59■□□□□ 0.89
PTPRT-212ENST00000620410 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.89
PTPRT-212ENST00000620410 GRIN2AQ12879 1464 aa20.55■□□□□ 0.88
PTPRT-212ENST00000620410 CEP170Q5SW79 1584 aa20.54■□□□□ 0.88
PTPRT-212ENST00000620410 ADAMTS12P58397 1594 aa20.51■□□□□ 0.87
PTPRT-212ENST00000620410 NUP160Q12769 1436 aa20.5■□□□□ 0.87
PTPRT-212ENST00000620410 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
PTPRT-212ENST00000620410 SHROOM2Q13796 1616 aa20.48■□□□□ 0.87
PTPRT-212ENST00000620410 WRNQ14191 1432 aaPredicted RBP eCLIP20.4■□□□□ 0.86
PTPRT-212ENST00000620410 FHAD1B1AJZ9 1412 aa20.39■□□□□ 0.85
PTPRT-212ENST00000620410 PRG4Q92954 1404 aaPredicted RBP20.33■□□□□ 0.84
PTPRT-212ENST00000620410 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
PTPRT-212ENST00000620410 BIVM-ERCC5R4GMW8 1640 aa20.31■□□□□ 0.84
PTPRT-212ENST00000620410 TOP2BQ02880 1626 aa20.3■□□□□ 0.84
PTPRT-212ENST00000620410 ABCC10Q5T3U5 1492 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms