RNA–Protein interactions for RNA: ENST00000619146.1

SYN3-213, Transcript of synapsin III, humanhuman

TSL 5 BASIC

Gene SYN3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-213ENST00000619146 NISCHQ9Y2I1 1504 aa22.8■■□□□ 1.24
SYN3-213ENST00000619146 ABCC9O60706 1549 aa21.04■□□□□ 0.96
SYN3-213ENST00000619146 CCDC180Q9P1Z9 1646 aa20.67■□□□□ 0.9
SYN3-213ENST00000619146 DNAJC5BQ9UF47 199 aa19.98■□□□□ 0.79
SYN3-213ENST00000619146 RB1CC1Q8TDY2 1594 aa19.79■□□□□ 0.76
SYN3-213ENST00000619146 UNC13AQ9UPW8 1703 aa19.64■□□□□ 0.73
SYN3-213ENST00000619146 DCAF8L2P0C7V8 631 aa19.54■□□□□ 0.72
SYN3-213ENST00000619146 NACADO15069 1562 aa19.53■□□□□ 0.72
SYN3-213ENST00000619146 PABPN1Q86U42 306 aaKnown RBP eCLIP19.52■□□□□ 0.72
SYN3-213ENST00000619146 BICRAQ9NZM4 1560 aa19.28■□□□□ 0.68
SYN3-213ENST00000619146 MYO15BQ96JP2 1530 aa19■□□□□ 0.63
SYN3-213ENST00000619146 CC2D2AQ9P2K1 1620 aa19■□□□□ 0.63
SYN3-213ENST00000619146 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
SYN3-213ENST00000619146 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
SYN3-213ENST00000619146 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
SYN3-213ENST00000619146 ZCCHC6Q5VYS8 1495 aaKnown RBP18.81■□□□□ 0.6
SYN3-213ENST00000619146 SHROOM4Q9ULL8 1493 aa18.74■□□□□ 0.59
SYN3-213ENST00000619146 DCAF1Q9Y4B6 1507 aa18.69■□□□□ 0.58
SYN3-213ENST00000619146 DNAJC5Q9H3Z4 198 aa18.46■□□□□ 0.55
SYN3-213ENST00000619146 ERCC6Q03468 1493 aa18.14■□□□□ 0.5
SYN3-213ENST00000619146 CUX2O14529 1486 aa18.1■□□□□ 0.49
SYN3-213ENST00000619146 NESP48681 1621 aa18■□□□□ 0.47
SYN3-213ENST00000619146 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
SYN3-213ENST00000619146 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
SYN3-213ENST00000619146 SMARCA4P51532 1647 aa17.94■□□□□ 0.46
SYN3-213ENST00000619146 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
SYN3-213ENST00000619146 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
SYN3-213ENST00000619146 HMGXB3Q12766 1538 aa17.87■□□□□ 0.45
SYN3-213ENST00000619146 THOC2Q8NI27 1593 aaKnown RBP17.86■□□□□ 0.45
SYN3-213ENST00000619146 BAZ1BQ9UIG0 1483 aaKnown RBP17.79■□□□□ 0.44
SYN3-213ENST00000619146 BAZ1AQ9NRL2 1556 aaPredicted RBP17.71■□□□□ 0.43
SYN3-213ENST00000619146 LAMC3Q9Y6N6 1575 aa17.71■□□□□ 0.43
SYN3-213ENST00000619146 TRIM41Q8WV44 630 aa17.71■□□□□ 0.43
SYN3-213ENST00000619146 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
SYN3-213ENST00000619146 PEG3Q9GZU2 1588 aa17.64■□□□□ 0.41
SYN3-213ENST00000619146 PDS5BQ9NTI5 1447 aa17.55■□□□□ 0.4
SYN3-213ENST00000619146 WIZO95785 1651 aa17.52■□□□□ 0.4
SYN3-213ENST00000619146 MRC2Q9UBG0 1479 aa17.48■□□□□ 0.39
SYN3-213ENST00000619146 WDR62O43379 1518 aa17.46■□□□□ 0.39
SYN3-213ENST00000619146 CADPSQ9ULU8 1353 aa17.43■□□□□ 0.38
SYN3-213ENST00000619146 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
SYN3-213ENST00000619146 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
SYN3-213ENST00000619146 PRDM2Q13029 1718 aa17.26■□□□□ 0.35
SYN3-213ENST00000619146 OSCARQ8IYS5 282 aa17.23■□□□□ 0.35
SYN3-213ENST00000619146 URB2Q14146 1524 aaKnown RBP17.22■□□□□ 0.35
SYN3-213ENST00000619146 RIMBP3CA6NJZ7 1639 aa17.22■□□□□ 0.35
SYN3-213ENST00000619146 RIMBP3BA6NNM3 1639 aa17.22■□□□□ 0.35
SYN3-213ENST00000619146 RIMBP3Q9UFD9 1639 aa17.22■□□□□ 0.35
SYN3-213ENST00000619146 CFTRP13569 1480 aa17.17■□□□□ 0.34
SYN3-213ENST00000619146 TOP2AP11388 1531 aaKnown RBP17.13■□□□□ 0.33
SYN3-213ENST00000619146 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
SYN3-213ENST00000619146 CHD1O14646 1710 aa17.08■□□□□ 0.32
SYN3-213ENST00000619146 RSF1Q96T23 1441 aaPredicted RBP17.07■□□□□ 0.32
SYN3-213ENST00000619146 ARHGEF11O15085 1522 aa17.05■□□□□ 0.32
SYN3-213ENST00000619146 EIF4G3O43432 1585 aaKnown RBP17.02■□□□□ 0.31
SYN3-213ENST00000619146 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
SYN3-213ENST00000619146 IFT140Q96RY7 1462 aa16.97■□□□□ 0.31
SYN3-213ENST00000619146 CCDC88BA6NC98 1476 aa16.95■□□□□ 0.3
SYN3-213ENST00000619146 CYB5RLQ6IPT4 315 aa16.95■□□□□ 0.3
SYN3-213ENST00000619146 TRHP20396 242 aaPredicted RBP16.9■□□□□ 0.3
SYN3-213ENST00000619146 TARBP1Q13395 1621 aaKnown RBP16.88■□□□□ 0.29
SYN3-213ENST00000619146 AQRO60306 1485 aaKnown RBP eCLIP16.88■□□□□ 0.29
SYN3-213ENST00000619146 FBLN2P98095 1184 aa16.88■□□□□ 0.29
SYN3-213ENST00000619146 DNMBPQ6XZF7 1577 aa16.88■□□□□ 0.29
SYN3-213ENST00000619146 ARAP1Q96P48 1450 aa16.86■□□□□ 0.29
SYN3-213ENST00000619146 ABCC8Q09428 1581 aa16.79■□□□□ 0.28
SYN3-213ENST00000619146 RAD54L2Q9Y4B4 1467 aa16.77■□□□□ 0.28
SYN3-213ENST00000619146 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
SYN3-213ENST00000619146 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.27
SYN3-213ENST00000619146 SNAPC4Q5SXM2 1469 aa16.69■□□□□ 0.26
SYN3-213ENST00000619146 PBRM1Q86U86 1689 aa16.68■□□□□ 0.26
SYN3-213ENST00000619146 CLASP1Q7Z460 1538 aa16.67■□□□□ 0.26
SYN3-213ENST00000619146 SOGA1O94964 1423 aa16.66■□□□□ 0.26
SYN3-213ENST00000619146 SYNJ1O43426 1573 aa16.64■□□□□ 0.25
SYN3-213ENST00000619146 FGD5Q6ZNL6 1462 aa16.64■□□□□ 0.25
SYN3-213ENST00000619146 AEBP2Q6ZN18 517 aaPredicted RBP16.63■□□□□ 0.25
SYN3-213ENST00000619146 WDR97A6NE52 1622 aa16.63■□□□□ 0.25
SYN3-213ENST00000619146 CHMP7Q8WUX9 453 aaPredicted RBP16.6■□□□□ 0.25
SYN3-213ENST00000619146 CUX1P39880 1505 aa16.59■□□□□ 0.25
SYN3-213ENST00000619146 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
SYN3-213ENST00000619146 GRIN2BQ13224 1484 aa16.53■□□□□ 0.24
SYN3-213ENST00000619146 SYNJ2O15056 1496 aa16.51■□□□□ 0.23
SYN3-213ENST00000619146 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
SYN3-213ENST00000619146 ERCC6L2Q5T890 1561 aa16.51■□□□□ 0.23
SYN3-213ENST00000619146 ABCA5Q8WWZ7 1642 aa16.46■□□□□ 0.23
SYN3-213ENST00000619146 KIF13AQ9H1H9 1805 aa16.45■□□□□ 0.22
SYN3-213ENST00000619146 CEP170Q5SW79 1584 aa16.38■□□□□ 0.21
SYN3-213ENST00000619146 ADAMTS12P58397 1594 aa16.36■□□□□ 0.21
SYN3-213ENST00000619146 GRIN2AQ12879 1464 aa16.35■□□□□ 0.21
SYN3-213ENST00000619146 ABCA10Q8WWZ4 1543 aa16.35■□□□□ 0.21
SYN3-213ENST00000619146 SHROOM2Q13796 1616 aa16.31■□□□□ 0.2
SYN3-213ENST00000619146 TSPOAP1O95153 1857 aa16.31■□□□□ 0.2
SYN3-213ENST00000619146 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.2
SYN3-213ENST00000619146 SUPT5HO00267 1087 aaKnown RBP16.27■□□□□ 0.2
SYN3-213ENST00000619146 NUP160Q12769 1436 aa16.25■□□□□ 0.19
SYN3-213ENST00000619146 TOP2BQ02880 1626 aa16.22■□□□□ 0.19
SYN3-213ENST00000619146 WRNQ14191 1432 aaPredicted RBP eCLIP16.21■□□□□ 0.19
SYN3-213ENST00000619146 FHAD1B1AJZ9 1412 aa16.19■□□□□ 0.18
SYN3-213ENST00000619146 PRG4Q92954 1404 aaPredicted RBP16.19■□□□□ 0.18
SYN3-213ENST00000619146 ERICH3Q5RHP9 1530 aa16.14■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms