RNA–Protein interactions for RNA: ENST00000617408.1

PCDHA11-203, Transcript of protocadherin alpha 11, humanhuman

TSL 3

Gene PCDHA11, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-203ENST00000617408 NISCHQ9Y2I1 1504 aa51.4■■■■■ 5.82
PCDHA11-203ENST00000617408 CCDC180Q9P1Z9 1646 aa45.87■■■■■ 4.93
PCDHA11-203ENST00000617408 ABCC9O60706 1549 aa45.11■■■■■ 4.81
PCDHA11-203ENST00000617408 RB1CC1Q8TDY2 1594 aa43.28■■■■■ 4.52
PCDHA11-203ENST00000617408 NACADO15069 1562 aa43.13■■■■■ 4.5
PCDHA11-203ENST00000617408 DCAF8L2P0C7V8 631 aa43.06■■■■■ 4.48
PCDHA11-203ENST00000617408 ZCCHC6Q5VYS8 1495 aaKnown RBP42.8■■■■■ 4.44
PCDHA11-203ENST00000617408 MYO15BQ96JP2 1530 aa42.74■■■■■ 4.43
PCDHA11-203ENST00000617408 DCAF1Q9Y4B6 1507 aa42.49■■■■■ 4.39
PCDHA11-203ENST00000617408 UNC13AQ9UPW8 1703 aa42.34■■■■■ 4.37
PCDHA11-203ENST00000617408 PABPN1Q86U42 306 aaKnown RBP eCLIP42.06■■■■■ 4.32
PCDHA11-203ENST00000617408 BICRAQ9NZM4 1560 aa41.94■■■■■ 4.3
PCDHA11-203ENST00000617408 SCRIBQ14160 1630 aa41.89■■■■■ 4.3
PCDHA11-203ENST00000617408 DNAJC5BQ9UF47 199 aa41.5■■■■■ 4.23
PCDHA11-203ENST00000617408 SHROOM4Q9ULL8 1493 aa41.47■■■■■ 4.23
PCDHA11-203ENST00000617408 EIF4G1Q04637 1599 aaKnown RBP40.89■■■■■ 4.14
PCDHA11-203ENST00000617408 CC2D2AQ9P2K1 1620 aa40.8■■■■■ 4.12
PCDHA11-203ENST00000617408 CECR2Q9BXF3 1484 aa40.53■■■■■ 4.08
PCDHA11-203ENST00000617408 SMARCA4P51532 1647 aa39.99■■■■□ 3.99
PCDHA11-203ENST00000617408 BAZ1AQ9NRL2 1556 aaPredicted RBP39.89■■■■□ 3.98
PCDHA11-203ENST00000617408 ATAD2BQ9ULI0 1458 aa39.78■■■■□ 3.96
PCDHA11-203ENST00000617408 SMARCA2P51531 1590 aa39.75■■■■□ 3.95
PCDHA11-203ENST00000617408 NCAPD3P42695 1498 aa39.75■■■■□ 3.95
PCDHA11-203ENST00000617408 MROH2BQ7Z745 1585 aa39.63■■■■□ 3.94
PCDHA11-203ENST00000617408 HMGXB3Q12766 1538 aa39.61■■■■□ 3.93
PCDHA11-203ENST00000617408 PEG3Q9GZU2 1588 aa39.55■■■■□ 3.92
PCDHA11-203ENST00000617408 BAZ1BQ9UIG0 1483 aaKnown RBP39.49■■■■□ 3.91
PCDHA11-203ENST00000617408 WIZO95785 1651 aa39.24■■■■□ 3.87
PCDHA11-203ENST00000617408 RSF1Q96T23 1441 aaPredicted RBP39.05■■■■□ 3.84
PCDHA11-203ENST00000617408 NESP48681 1621 aa38.96■■■■□ 3.83
PCDHA11-203ENST00000617408 ERCC6Q03468 1493 aa38.92■■■■□ 3.82
PCDHA11-203ENST00000617408 LAMC3Q9Y6N6 1575 aa38.82■■■■□ 3.8
PCDHA11-203ENST00000617408 TOP2AP11388 1531 aaKnown RBP38.79■■■■□ 3.8
PCDHA11-203ENST00000617408 CADPSQ9ULU8 1353 aa38.59■■■■□ 3.77
PCDHA11-203ENST00000617408 KIF21AQ7Z4S6 1674 aa38.55■■■■□ 3.76
PCDHA11-203ENST00000617408 CUX2O14529 1486 aa38.54■■■■□ 3.76
PCDHA11-203ENST00000617408 PDS5BQ9NTI5 1447 aa38.53■■■■□ 3.76
PCDHA11-203ENST00000617408 THOC2Q8NI27 1593 aaKnown RBP38.45■■■■□ 3.75
PCDHA11-203ENST00000617408 CFTRP13569 1480 aa38.33■■■■□ 3.73
PCDHA11-203ENST00000617408 CCDC88BA6NC98 1476 aa38.28■■■■□ 3.72
PCDHA11-203ENST00000617408 FANCD2Q9BXW9 1451 aa38.22■■■■□ 3.71
PCDHA11-203ENST00000617408 CEP164Q9UPV0 1460 aa38.21■■■■□ 3.71
PCDHA11-203ENST00000617408 MRC2Q9UBG0 1479 aa38.19■■■■□ 3.7
PCDHA11-203ENST00000617408 PRDM2Q13029 1718 aa38.15■■■■□ 3.7
PCDHA11-203ENST00000617408 WDR62O43379 1518 aa38.07■■■■□ 3.69
PCDHA11-203ENST00000617408 SUPT5HO00267 1087 aaKnown RBP37.92■■■■□ 3.66
PCDHA11-203ENST00000617408 URB2Q14146 1524 aaKnown RBP37.84■■■■□ 3.65
PCDHA11-203ENST00000617408 TOPBP1Q92547 1522 aa37.57■■■■□ 3.61
PCDHA11-203ENST00000617408 DNAJC5Q9H3Z4 198 aa37.55■■■■□ 3.6
PCDHA11-203ENST00000617408 DNMBPQ6XZF7 1577 aa37.53■■■■□ 3.6
PCDHA11-203ENST00000617408 ABCC8Q09428 1581 aa37.51■■■■□ 3.59
PCDHA11-203ENST00000617408 IFT140Q96RY7 1462 aa37.39■■■■□ 3.58
PCDHA11-203ENST00000617408 ZNF608Q9ULD9 1512 aaPredicted RBP37.25■■■■□ 3.55
PCDHA11-203ENST00000617408 POLA1P09884 1462 aaPredicted RBP37.24■■■■□ 3.55
PCDHA11-203ENST00000617408 CUX1P39880 1505 aa37.2■■■■□ 3.55
PCDHA11-203ENST00000617408 TARBP1Q13395 1621 aaKnown RBP37.18■■■■□ 3.54
PCDHA11-203ENST00000617408 EIF4G3O43432 1585 aaKnown RBP37.16■■■■□ 3.54
PCDHA11-203ENST00000617408 FGD5Q6ZNL6 1462 aa37.13■■■■□ 3.54
PCDHA11-203ENST00000617408 RAD54L2Q9Y4B4 1467 aa37.08■■■■□ 3.53
PCDHA11-203ENST00000617408 SOGA1O94964 1423 aa37.04■■■■□ 3.52
PCDHA11-203ENST00000617408 AQRO60306 1485 aaKnown RBP eCLIP36.99■■■■□ 3.51
PCDHA11-203ENST00000617408 TDRD9Q8NDG6 1382 aaKnown RBP36.88■■■■□ 3.49
PCDHA11-203ENST00000617408 WDR97A6NE52 1622 aa36.88■■■■□ 3.49
PCDHA11-203ENST00000617408 WRNQ14191 1432 aaPredicted RBP eCLIP36.87■■■■□ 3.49
PCDHA11-203ENST00000617408 BIVM-ERCC5R4GMW8 1640 aa36.85■■■■□ 3.49
PCDHA11-203ENST00000617408 SYNJ1O43426 1573 aa36.84■■■■□ 3.49
PCDHA11-203ENST00000617408 OSCARQ8IYS5 282 aa36.84■■■■□ 3.49
PCDHA11-203ENST00000617408 TOP2BQ02880 1626 aa36.83■■■■□ 3.49
PCDHA11-203ENST00000617408 CHD1O14646 1710 aa36.75■■■■□ 3.47
PCDHA11-203ENST00000617408 ABCA10Q8WWZ4 1543 aa36.73■■■■□ 3.47
PCDHA11-203ENST00000617408 SNAPC4Q5SXM2 1469 aa36.69■■■■□ 3.46
PCDHA11-203ENST00000617408 PBRM1Q86U86 1689 aa36.67■■■■□ 3.46
PCDHA11-203ENST00000617408 GRIN2BQ13224 1484 aa36.67■■■■□ 3.46
PCDHA11-203ENST00000617408 ABCA5Q8WWZ7 1642 aa36.65■■■■□ 3.46
PCDHA11-203ENST00000617408 GAPVD1Q14C86 1478 aa36.63■■■■□ 3.45
PCDHA11-203ENST00000617408 FBLN2P98095 1184 aa36.61■■■■□ 3.45
PCDHA11-203ENST00000617408 MAGI1Q96QZ7 1491 aaPredicted RBP36.6■■■■□ 3.45
PCDHA11-203ENST00000617408 SYNJ2O15056 1496 aa36.46■■■■□ 3.43
PCDHA11-203ENST00000617408 CHMP7Q8WUX9 453 aaPredicted RBP36.44■■■■□ 3.42
PCDHA11-203ENST00000617408 RIMBP3CA6NJZ7 1639 aa36.4■■■■□ 3.42
PCDHA11-203ENST00000617408 RIMBP3BA6NNM3 1639 aa36.4■■■■□ 3.42
PCDHA11-203ENST00000617408 RIMBP3Q9UFD9 1639 aa36.4■■■■□ 3.42
PCDHA11-203ENST00000617408 TRIM41Q8WV44 630 aa36.34■■■■□ 3.41
PCDHA11-203ENST00000617408 ADAMTS12P58397 1594 aa36.34■■■■□ 3.41
PCDHA11-203ENST00000617408 ARHGEF11O15085 1522 aa36.34■■■■□ 3.41
PCDHA11-203ENST00000617408 ERICH3Q5RHP9 1530 aa36.29■■■■□ 3.4
PCDHA11-203ENST00000617408 CLASP1Q7Z460 1538 aa36.29■■■■□ 3.4
PCDHA11-203ENST00000617408 GRIN2AQ12879 1464 aa36.21■■■■□ 3.39
PCDHA11-203ENST00000617408 FHAD1B1AJZ9 1412 aa36.19■■■■□ 3.38
PCDHA11-203ENST00000617408 KIF27Q86VH2 1401 aa36.1■■■■□ 3.37
PCDHA11-203ENST00000617408 CEP170Q5SW79 1584 aa36.07■■■■□ 3.37
PCDHA11-203ENST00000617408 ARAP1Q96P48 1450 aa36.03■■■■□ 3.36
PCDHA11-203ENST00000617408 NUP160Q12769 1436 aa36.02■■■■□ 3.36
PCDHA11-203ENST00000617408 CUL7Q14999 1698 aa35.97■■■■□ 3.35
PCDHA11-203ENST00000617408 CYB5RLQ6IPT4 315 aa35.95■■■■□ 3.35
PCDHA11-203ENST00000617408 IGF1RP08069 1367 aa35.92■■■■□ 3.34
PCDHA11-203ENST00000617408 SHROOM2Q13796 1616 aa35.83■■■■□ 3.33
PCDHA11-203ENST00000617408 RUSC2Q8N2Y8 1516 aa35.81■■■■□ 3.32
PCDHA11-203ENST00000617408 ERCC6L2Q5T890 1561 aa35.78■■■■□ 3.32
PCDHA11-203ENST00000617408 CARMIL1Q5VZK9 1371 aa35.75■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 238.1 ms