RNA–Protein interactions for RNA: ENST00000616289.1

PDLIM2-219, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 209 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-219ENST00000616289 NISCHQ9Y2I1 1504 aa26.94■■□□□ 1.9
PDLIM2-219ENST00000616289 CCDC180Q9P1Z9 1646 aa24.21■■□□□ 1.47
PDLIM2-219ENST00000616289 ABCC9O60706 1549 aa24.18■■□□□ 1.46
PDLIM2-219ENST00000616289 RB1CC1Q8TDY2 1594 aa23.01■■□□□ 1.27
PDLIM2-219ENST00000616289 NACADO15069 1562 aa22.85■■□□□ 1.25
PDLIM2-219ENST00000616289 DCAF8L2P0C7V8 631 aa22.65■■□□□ 1.22
PDLIM2-219ENST00000616289 DNAJC5BQ9UF47 199 aa22.64■■□□□ 1.21
PDLIM2-219ENST00000616289 UNC13AQ9UPW8 1703 aa22.56■■□□□ 1.2
PDLIM2-219ENST00000616289 MYO15BQ96JP2 1530 aa22.53■■□□□ 1.2
PDLIM2-219ENST00000616289 PABPN1Q86U42 306 aaKnown RBP eCLIP22.47■■□□□ 1.19
PDLIM2-219ENST00000616289 BICRAQ9NZM4 1560 aa22.38■■□□□ 1.17
PDLIM2-219ENST00000616289 ZCCHC6Q5VYS8 1495 aaKnown RBP22.35■■□□□ 1.17
PDLIM2-219ENST00000616289 DCAF1Q9Y4B6 1507 aa22.26■■□□□ 1.15
PDLIM2-219ENST00000616289 SCRIBQ14160 1630 aa22.06■■□□□ 1.12
PDLIM2-219ENST00000616289 SHROOM4Q9ULL8 1493 aa22.04■■□□□ 1.12
PDLIM2-219ENST00000616289 CC2D2AQ9P2K1 1620 aa21.86■■□□□ 1.09
PDLIM2-219ENST00000616289 EIF4G1Q04637 1599 aaKnown RBP21.82■■□□□ 1.08
PDLIM2-219ENST00000616289 CECR2Q9BXF3 1484 aa21.77■■□□□ 1.07
PDLIM2-219ENST00000616289 NCAPD3P42695 1498 aa21.08■□□□□ 0.97
PDLIM2-219ENST00000616289 SMARCA4P51532 1647 aa21.04■□□□□ 0.96
PDLIM2-219ENST00000616289 ATAD2BQ9ULI0 1458 aa21.03■□□□□ 0.96
PDLIM2-219ENST00000616289 SMARCA2P51531 1590 aa20.97■□□□□ 0.95
PDLIM2-219ENST00000616289 HMGXB3Q12766 1538 aa20.96■□□□□ 0.95
PDLIM2-219ENST00000616289 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
PDLIM2-219ENST00000616289 ERCC6Q03468 1493 aa20.86■□□□□ 0.93
PDLIM2-219ENST00000616289 PEG3Q9GZU2 1588 aa20.84■□□□□ 0.93
PDLIM2-219ENST00000616289 CUX2O14529 1486 aa20.83■□□□□ 0.93
PDLIM2-219ENST00000616289 BAZ1BQ9UIG0 1483 aaKnown RBP20.83■□□□□ 0.93
PDLIM2-219ENST00000616289 NESP48681 1621 aa20.78■□□□□ 0.92
PDLIM2-219ENST00000616289 MROH2BQ7Z745 1585 aa20.77■□□□□ 0.92
PDLIM2-219ENST00000616289 DNAJC5Q9H3Z4 198 aa20.76■□□□□ 0.91
PDLIM2-219ENST00000616289 LAMC3Q9Y6N6 1575 aa20.63■□□□□ 0.89
PDLIM2-219ENST00000616289 THOC2Q8NI27 1593 aaKnown RBP20.61■□□□□ 0.89
PDLIM2-219ENST00000616289 WIZO95785 1651 aa20.54■□□□□ 0.88
PDLIM2-219ENST00000616289 KIF21AQ7Z4S6 1674 aa20.54■□□□□ 0.88
PDLIM2-219ENST00000616289 PDS5BQ9NTI5 1447 aa20.47■□□□□ 0.87
PDLIM2-219ENST00000616289 CADPSQ9ULU8 1353 aa20.43■□□□□ 0.86
PDLIM2-219ENST00000616289 MRC2Q9UBG0 1479 aa20.33■□□□□ 0.85
PDLIM2-219ENST00000616289 RSF1Q96T23 1441 aaPredicted RBP20.31■□□□□ 0.84
PDLIM2-219ENST00000616289 WDR62O43379 1518 aa20.31■□□□□ 0.84
PDLIM2-219ENST00000616289 TOP2AP11388 1531 aaKnown RBP20.27■□□□□ 0.84
PDLIM2-219ENST00000616289 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
PDLIM2-219ENST00000616289 FANCD2Q9BXW9 1451 aa20.23■□□□□ 0.83
PDLIM2-219ENST00000616289 CFTRP13569 1480 aa20.22■□□□□ 0.83
PDLIM2-219ENST00000616289 PRDM2Q13029 1718 aa20.07■□□□□ 0.8
PDLIM2-219ENST00000616289 URB2Q14146 1524 aaKnown RBP20.07■□□□□ 0.8
PDLIM2-219ENST00000616289 CCDC88BA6NC98 1476 aa20.01■□□□□ 0.79
PDLIM2-219ENST00000616289 TRIM41Q8WV44 630 aa19.86■□□□□ 0.77
PDLIM2-219ENST00000616289 TOPBP1Q92547 1522 aa19.85■□□□□ 0.77
PDLIM2-219ENST00000616289 IFT140Q96RY7 1462 aa19.83■□□□□ 0.76
PDLIM2-219ENST00000616289 ZNF608Q9ULD9 1512 aaPredicted RBP19.82■□□□□ 0.76
PDLIM2-219ENST00000616289 OSCARQ8IYS5 282 aa19.8■□□□□ 0.76
PDLIM2-219ENST00000616289 DNMBPQ6XZF7 1577 aa19.78■□□□□ 0.76
PDLIM2-219ENST00000616289 ABCC8Q09428 1581 aa19.77■□□□□ 0.76
PDLIM2-219ENST00000616289 EIF4G3O43432 1585 aaKnown RBP19.75■□□□□ 0.75
PDLIM2-219ENST00000616289 TARBP1Q13395 1621 aaKnown RBP19.69■□□□□ 0.74
PDLIM2-219ENST00000616289 RIMBP3CA6NJZ7 1639 aa19.65■□□□□ 0.74
PDLIM2-219ENST00000616289 RIMBP3BA6NNM3 1639 aa19.65■□□□□ 0.74
PDLIM2-219ENST00000616289 RIMBP3Q9UFD9 1639 aa19.65■□□□□ 0.74
PDLIM2-219ENST00000616289 POLA1P09884 1462 aaPredicted RBP19.65■□□□□ 0.74
PDLIM2-219ENST00000616289 AQRO60306 1485 aaKnown RBP eCLIP19.61■□□□□ 0.73
PDLIM2-219ENST00000616289 CHD1O14646 1710 aa19.6■□□□□ 0.73
PDLIM2-219ENST00000616289 ARHGEF11O15085 1522 aa19.58■□□□□ 0.73
PDLIM2-219ENST00000616289 RAD54L2Q9Y4B4 1467 aa19.57■□□□□ 0.72
PDLIM2-219ENST00000616289 FGD5Q6ZNL6 1462 aa19.53■□□□□ 0.72
PDLIM2-219ENST00000616289 SOGA1O94964 1423 aa19.52■□□□□ 0.72
PDLIM2-219ENST00000616289 CUX1P39880 1505 aa19.52■□□□□ 0.72
PDLIM2-219ENST00000616289 WDR97A6NE52 1622 aa19.48■□□□□ 0.71
PDLIM2-219ENST00000616289 TDRD9Q8NDG6 1382 aaKnown RBP19.48■□□□□ 0.71
PDLIM2-219ENST00000616289 SNAPC4Q5SXM2 1469 aa19.45■□□□□ 0.7
PDLIM2-219ENST00000616289 FBLN2P98095 1184 aa19.44■□□□□ 0.7
PDLIM2-219ENST00000616289 ARAP1Q96P48 1450 aa19.4■□□□□ 0.7
PDLIM2-219ENST00000616289 MAGI1Q96QZ7 1491 aaPredicted RBP19.38■□□□□ 0.69
PDLIM2-219ENST00000616289 CLASP1Q7Z460 1538 aa19.37■□□□□ 0.69
PDLIM2-219ENST00000616289 GRIN2BQ13224 1484 aa19.37■□□□□ 0.69
PDLIM2-219ENST00000616289 SUPT5HO00267 1087 aaKnown RBP19.36■□□□□ 0.69
PDLIM2-219ENST00000616289 CYB5RLQ6IPT4 315 aa19.36■□□□□ 0.69
PDLIM2-219ENST00000616289 PBRM1Q86U86 1689 aa19.36■□□□□ 0.69
PDLIM2-219ENST00000616289 SYNJ1O43426 1573 aa19.33■□□□□ 0.69
PDLIM2-219ENST00000616289 SYNJ2O15056 1496 aa19.31■□□□□ 0.68
PDLIM2-219ENST00000616289 ABCA5Q8WWZ7 1642 aa19.31■□□□□ 0.68
PDLIM2-219ENST00000616289 GAPVD1Q14C86 1478 aa19.3■□□□□ 0.68
PDLIM2-219ENST00000616289 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
PDLIM2-219ENST00000616289 ABCA10Q8WWZ4 1543 aa19.3■□□□□ 0.68
PDLIM2-219ENST00000616289 BIVM-ERCC5R4GMW8 1640 aa19.22■□□□□ 0.67
PDLIM2-219ENST00000616289 TOP2BQ02880 1626 aa19.21■□□□□ 0.67
PDLIM2-219ENST00000616289 WRNQ14191 1432 aaPredicted RBP eCLIP19.19■□□□□ 0.66
PDLIM2-219ENST00000616289 ADAMTS12P58397 1594 aa19.16■□□□□ 0.66
PDLIM2-219ENST00000616289 TRHP20396 242 aaPredicted RBP19.14■□□□□ 0.65
PDLIM2-219ENST00000616289 GRIN2AQ12879 1464 aa19.14■□□□□ 0.65
PDLIM2-219ENST00000616289 CEP170Q5SW79 1584 aa19.1■□□□□ 0.65
PDLIM2-219ENST00000616289 ERCC6L2Q5T890 1561 aa19.07■□□□□ 0.64
PDLIM2-219ENST00000616289 NUP160Q12769 1436 aa19.07■□□□□ 0.64
PDLIM2-219ENST00000616289 ERICH3Q5RHP9 1530 aa19.06■□□□□ 0.64
PDLIM2-219ENST00000616289 FHAD1B1AJZ9 1412 aa19.05■□□□□ 0.64
PDLIM2-219ENST00000616289 SHROOM2Q13796 1616 aa19.02■□□□□ 0.64
PDLIM2-219ENST00000616289 RUSC2Q8N2Y8 1516 aa18.9■□□□□ 0.62
PDLIM2-219ENST00000616289 PRG4Q92954 1404 aaPredicted RBP18.86■□□□□ 0.61
PDLIM2-219ENST00000616289 JPH4Q96JJ6 628 aa18.81■□□□□ 0.6
PDLIM2-219ENST00000616289 CUL7Q14999 1698 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms