RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NISCHQ9Y2I1 1504 aa47.55■■■■■ 5.2
CDX1-202ENST00000616154 CCDC180Q9P1Z9 1646 aa42.73■■■■■ 4.43
CDX1-202ENST00000616154 ABCC9O60706 1549 aa42.58■■■■■ 4.41
CDX1-202ENST00000616154 RB1CC1Q8TDY2 1594 aa40.61■■■■■ 4.09
CDX1-202ENST00000616154 NACADO15069 1562 aa40.35■■■■■ 4.05
CDX1-202ENST00000616154 DCAF8L2P0C7V8 631 aa39.97■■■■□ 3.99
CDX1-202ENST00000616154 DNAJC5BQ9UF47 199 aa39.87■■■■□ 3.97
CDX1-202ENST00000616154 MYO15BQ96JP2 1530 aa39.84■■■■□ 3.97
CDX1-202ENST00000616154 UNC13AQ9UPW8 1703 aa39.74■■■■□ 3.95
CDX1-202ENST00000616154 PABPN1Q86U42 306 aaKnown RBP eCLIP39.59■■■■□ 3.93
CDX1-202ENST00000616154 ZCCHC6Q5VYS8 1495 aaKnown RBP39.44■■■■□ 3.9
CDX1-202ENST00000616154 BICRAQ9NZM4 1560 aa39.43■■■■□ 3.9
CDX1-202ENST00000616154 DCAF1Q9Y4B6 1507 aa39.33■■■■□ 3.89
CDX1-202ENST00000616154 SHROOM4Q9ULL8 1493 aa38.95■■■■□ 3.83
CDX1-202ENST00000616154 SCRIBQ14160 1630 aa38.86■■■■□ 3.81
CDX1-202ENST00000616154 CC2D2AQ9P2K1 1620 aa38.51■■■■□ 3.76
CDX1-202ENST00000616154 EIF4G1Q04637 1599 aaKnown RBP38.45■■■■□ 3.75
CDX1-202ENST00000616154 CECR2Q9BXF3 1484 aa38.37■■■■□ 3.73
CDX1-202ENST00000616154 NCAPD3P42695 1498 aa37.22■■■■□ 3.55
CDX1-202ENST00000616154 SMARCA4P51532 1647 aa37.11■■■■□ 3.53
CDX1-202ENST00000616154 ATAD2BQ9ULI0 1458 aa37.11■■■■□ 3.53
CDX1-202ENST00000616154 SMARCA2P51531 1590 aa37.03■■■■□ 3.52
CDX1-202ENST00000616154 HMGXB3Q12766 1538 aa36.99■■■■□ 3.51
CDX1-202ENST00000616154 BAZ1AQ9NRL2 1556 aaPredicted RBP36.92■■■■□ 3.5
CDX1-202ENST00000616154 PEG3Q9GZU2 1588 aa36.78■■■■□ 3.48
CDX1-202ENST00000616154 ERCC6Q03468 1493 aa36.77■■■■□ 3.48
CDX1-202ENST00000616154 BAZ1BQ9UIG0 1483 aaKnown RBP36.75■■■■□ 3.47
CDX1-202ENST00000616154 CUX2O14529 1486 aa36.74■■■■□ 3.47
CDX1-202ENST00000616154 MROH2BQ7Z745 1585 aa36.62■■■■□ 3.45
CDX1-202ENST00000616154 DNAJC5Q9H3Z4 198 aa36.6■■■■□ 3.45
CDX1-202ENST00000616154 NESP48681 1621 aa36.59■■■■□ 3.45
CDX1-202ENST00000616154 LAMC3Q9Y6N6 1575 aa36.41■■■■□ 3.42
CDX1-202ENST00000616154 THOC2Q8NI27 1593 aaKnown RBP36.28■■■■□ 3.4
CDX1-202ENST00000616154 WIZO95785 1651 aa36.21■■■■□ 3.39
CDX1-202ENST00000616154 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
CDX1-202ENST00000616154 PDS5BQ9NTI5 1447 aa36.15■■■■□ 3.38
CDX1-202ENST00000616154 CADPSQ9ULU8 1353 aa36.07■■■■□ 3.36
CDX1-202ENST00000616154 RSF1Q96T23 1441 aaPredicted RBP35.87■■■■□ 3.33
CDX1-202ENST00000616154 MRC2Q9UBG0 1479 aa35.86■■■■□ 3.33
CDX1-202ENST00000616154 WDR62O43379 1518 aa35.79■■■■□ 3.32
CDX1-202ENST00000616154 TOP2AP11388 1531 aaKnown RBP35.77■■■■□ 3.32
CDX1-202ENST00000616154 CEP164Q9UPV0 1460 aa35.71■■■■□ 3.31
CDX1-202ENST00000616154 CFTRP13569 1480 aa35.69■■■■□ 3.3
CDX1-202ENST00000616154 FANCD2Q9BXW9 1451 aa35.67■■■■□ 3.3
CDX1-202ENST00000616154 PRDM2Q13029 1718 aa35.43■■■■□ 3.26
CDX1-202ENST00000616154 URB2Q14146 1524 aaKnown RBP35.37■■■■□ 3.25
CDX1-202ENST00000616154 CCDC88BA6NC98 1476 aa35.32■■■■□ 3.24
CDX1-202ENST00000616154 TOPBP1Q92547 1522 aa35.01■■■■□ 3.2
CDX1-202ENST00000616154 IFT140Q96RY7 1462 aa35■■■■□ 3.19
CDX1-202ENST00000616154 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
CDX1-202ENST00000616154 TRIM41Q8WV44 630 aa34.96■■■■□ 3.19
CDX1-202ENST00000616154 ABCC8Q09428 1581 aa34.95■■■■□ 3.19
CDX1-202ENST00000616154 ZNF608Q9ULD9 1512 aaPredicted RBP34.92■■■■□ 3.18
CDX1-202ENST00000616154 DNMBPQ6XZF7 1577 aa34.91■■■■□ 3.18
CDX1-202ENST00000616154 EIF4G3O43432 1585 aaKnown RBP34.78■■■■□ 3.16
CDX1-202ENST00000616154 TARBP1Q13395 1621 aaKnown RBP34.72■■■■□ 3.15
CDX1-202ENST00000616154 POLA1P09884 1462 aaPredicted RBP34.65■■■■□ 3.14
CDX1-202ENST00000616154 RIMBP3CA6NJZ7 1639 aa34.6■■■■□ 3.13
CDX1-202ENST00000616154 RIMBP3BA6NNM3 1639 aa34.6■■■■□ 3.13
CDX1-202ENST00000616154 RIMBP3Q9UFD9 1639 aa34.6■■■■□ 3.13
CDX1-202ENST00000616154 AQRO60306 1485 aaKnown RBP eCLIP34.59■■■■□ 3.13
CDX1-202ENST00000616154 CHD1O14646 1710 aa34.53■■■■□ 3.12
CDX1-202ENST00000616154 RAD54L2Q9Y4B4 1467 aa34.49■■■■□ 3.11
CDX1-202ENST00000616154 ARHGEF11O15085 1522 aa34.48■■■■□ 3.11
CDX1-202ENST00000616154 SOGA1O94964 1423 aa34.46■■■■□ 3.11
CDX1-202ENST00000616154 FGD5Q6ZNL6 1462 aa34.44■■■■□ 3.1
CDX1-202ENST00000616154 WDR97A6NE52 1622 aa34.42■■■■□ 3.1
CDX1-202ENST00000616154 CUX1P39880 1505 aa34.42■■■■□ 3.1
CDX1-202ENST00000616154 TDRD9Q8NDG6 1382 aaKnown RBP34.37■■■■□ 3.09
CDX1-202ENST00000616154 FBLN2P98095 1184 aa34.3■■■■□ 3.08
CDX1-202ENST00000616154 SNAPC4Q5SXM2 1469 aa34.26■■■■□ 3.08
CDX1-202ENST00000616154 SUPT5HO00267 1087 aaKnown RBP34.21■■■■□ 3.07
CDX1-202ENST00000616154 MAGI1Q96QZ7 1491 aaPredicted RBP34.2■■■■□ 3.07
CDX1-202ENST00000616154 GRIN2BQ13224 1484 aa34.19■■■■□ 3.06
CDX1-202ENST00000616154 ARAP1Q96P48 1450 aa34.14■■■■□ 3.06
CDX1-202ENST00000616154 CYB5RLQ6IPT4 315 aa34.14■■■■□ 3.06
CDX1-202ENST00000616154 CLASP1Q7Z460 1538 aa34.13■■■■□ 3.05
CDX1-202ENST00000616154 PBRM1Q86U86 1689 aa34.12■■■■□ 3.05
CDX1-202ENST00000616154 SYNJ1O43426 1573 aa34.1■■■■□ 3.05
CDX1-202ENST00000616154 SYNJ2O15056 1496 aa34.09■■■■□ 3.05
CDX1-202ENST00000616154 CHMP7Q8WUX9 453 aaPredicted RBP34.08■■■■□ 3.05
CDX1-202ENST00000616154 ABCA10Q8WWZ4 1543 aa34.06■■■■□ 3.04
CDX1-202ENST00000616154 GAPVD1Q14C86 1478 aa34.06■■■■□ 3.04
CDX1-202ENST00000616154 ABCA5Q8WWZ7 1642 aa34.04■■■■□ 3.04
CDX1-202ENST00000616154 BIVM-ERCC5R4GMW8 1640 aa33.93■■■■□ 3.02
CDX1-202ENST00000616154 WRNQ14191 1432 aaPredicted RBP eCLIP33.91■■■■□ 3.02
CDX1-202ENST00000616154 TOP2BQ02880 1626 aa33.9■■■■□ 3.02
CDX1-202ENST00000616154 ADAMTS12P58397 1594 aa33.78■■■■□ 3
CDX1-202ENST00000616154 GRIN2AQ12879 1464 aa33.75■■■□□ 2.99
CDX1-202ENST00000616154 TRHP20396 242 aaPredicted RBP33.74■■■□□ 2.99
CDX1-202ENST00000616154 NUP160Q12769 1436 aa33.65■■■□□ 2.98
CDX1-202ENST00000616154 ERICH3Q5RHP9 1530 aa33.64■■■□□ 2.98
CDX1-202ENST00000616154 CEP170Q5SW79 1584 aa33.64■■■□□ 2.98
CDX1-202ENST00000616154 FHAD1B1AJZ9 1412 aa33.64■■■□□ 2.98
CDX1-202ENST00000616154 ERCC6L2Q5T890 1561 aa33.56■■■□□ 2.96
CDX1-202ENST00000616154 SHROOM2Q13796 1616 aa33.54■■■□□ 2.96
CDX1-202ENST00000616154 RUSC2Q8N2Y8 1516 aa33.31■■■□□ 2.92
CDX1-202ENST00000616154 PRG4Q92954 1404 aaPredicted RBP33.28■■■□□ 2.92
CDX1-202ENST00000616154 JPH4Q96JJ6 628 aa33.24■■■□□ 2.91
CDX1-202ENST00000616154 KIF27Q86VH2 1401 aa33.2■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms