RNA–Protein interactions for RNA: ENST00000615732.1

COL4A1-205, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 5

Gene COL4A1, Length 1,077 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-205ENST00000615732 NISCHQ9Y2I1 1504 aa26.31■■□□□ 1.8
COL4A1-205ENST00000615732 ABCC9O60706 1549 aa23.88■■□□□ 1.41
COL4A1-205ENST00000615732 CCDC180Q9P1Z9 1646 aa23.72■■□□□ 1.39
COL4A1-205ENST00000615732 RB1CC1Q8TDY2 1594 aa22.64■■□□□ 1.22
COL4A1-205ENST00000615732 DNAJC5BQ9UF47 199 aa22.55■■□□□ 1.2
COL4A1-205ENST00000615732 NACADO15069 1562 aa22.43■■□□□ 1.18
COL4A1-205ENST00000615732 DCAF8L2P0C7V8 631 aa22.19■■□□□ 1.14
COL4A1-205ENST00000615732 UNC13AQ9UPW8 1703 aa22.19■■□□□ 1.14
COL4A1-205ENST00000615732 PABPN1Q86U42 306 aaKnown RBP eCLIP22.17■■□□□ 1.14
COL4A1-205ENST00000615732 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
COL4A1-205ENST00000615732 BICRAQ9NZM4 1560 aa22.04■■□□□ 1.12
COL4A1-205ENST00000615732 ZCCHC6Q5VYS8 1495 aaKnown RBP21.79■■□□□ 1.08
COL4A1-205ENST00000615732 DCAF1Q9Y4B6 1507 aa21.72■■□□□ 1.07
COL4A1-205ENST00000615732 SHROOM4Q9ULL8 1493 aa21.68■■□□□ 1.06
COL4A1-205ENST00000615732 SCRIBQ14160 1630 aa21.62■■□□□ 1.05
COL4A1-205ENST00000615732 CC2D2AQ9P2K1 1620 aa21.58■■□□□ 1.04
COL4A1-205ENST00000615732 CECR2Q9BXF3 1484 aa21.52■■□□□ 1.04
COL4A1-205ENST00000615732 EIF4G1Q04637 1599 aaKnown RBP21.49■■□□□ 1.03
COL4A1-205ENST00000615732 DNAJC5Q9H3Z4 198 aa20.8■□□□□ 0.92
COL4A1-205ENST00000615732 NCAPD3P42695 1498 aa20.7■□□□□ 0.9
COL4A1-205ENST00000615732 CUX2O14529 1486 aa20.65■□□□□ 0.9
COL4A1-205ENST00000615732 ATAD2BQ9ULI0 1458 aa20.62■□□□□ 0.89
COL4A1-205ENST00000615732 ERCC6Q03468 1493 aa20.62■□□□□ 0.89
COL4A1-205ENST00000615732 SMARCA4P51532 1647 aa20.59■□□□□ 0.89
COL4A1-205ENST00000615732 HMGXB3Q12766 1538 aa20.57■□□□□ 0.88
COL4A1-205ENST00000615732 SMARCA2P51531 1590 aa20.55■□□□□ 0.88
COL4A1-205ENST00000615732 NESP48681 1621 aa20.48■□□□□ 0.87
COL4A1-205ENST00000615732 BAZ1AQ9NRL2 1556 aaPredicted RBP20.43■□□□□ 0.86
COL4A1-205ENST00000615732 BAZ1BQ9UIG0 1483 aaKnown RBP20.42■□□□□ 0.86
COL4A1-205ENST00000615732 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
COL4A1-205ENST00000615732 THOC2Q8NI27 1593 aaKnown RBP20.34■□□□□ 0.85
COL4A1-205ENST00000615732 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
COL4A1-205ENST00000615732 LAMC3Q9Y6N6 1575 aa20.29■□□□□ 0.84
COL4A1-205ENST00000615732 KIF21AQ7Z4S6 1674 aa20.23■□□□□ 0.83
COL4A1-205ENST00000615732 PDS5BQ9NTI5 1447 aa20.13■□□□□ 0.81
COL4A1-205ENST00000615732 WIZO95785 1651 aa20.05■□□□□ 0.8
COL4A1-205ENST00000615732 CADPSQ9ULU8 1353 aa20.05■□□□□ 0.8
COL4A1-205ENST00000615732 MRC2Q9UBG0 1479 aa20.01■□□□□ 0.79
COL4A1-205ENST00000615732 WDR62O43379 1518 aa20■□□□□ 0.79
COL4A1-205ENST00000615732 CEP164Q9UPV0 1460 aa19.89■□□□□ 0.77
COL4A1-205ENST00000615732 FANCD2Q9BXW9 1451 aa19.86■□□□□ 0.77
COL4A1-205ENST00000615732 TRIM41Q8WV44 630 aa19.82■□□□□ 0.76
COL4A1-205ENST00000615732 CFTRP13569 1480 aa19.8■□□□□ 0.76
COL4A1-205ENST00000615732 RSF1Q96T23 1441 aaPredicted RBP19.8■□□□□ 0.76
COL4A1-205ENST00000615732 TOP2AP11388 1531 aaKnown RBP19.77■□□□□ 0.76
COL4A1-205ENST00000615732 URB2Q14146 1524 aaKnown RBP19.72■□□□□ 0.75
COL4A1-205ENST00000615732 PRDM2Q13029 1718 aa19.64■□□□□ 0.73
COL4A1-205ENST00000615732 OSCARQ8IYS5 282 aa19.6■□□□□ 0.73
COL4A1-205ENST00000615732 CCDC88BA6NC98 1476 aa19.52■□□□□ 0.72
COL4A1-205ENST00000615732 ZNF608Q9ULD9 1512 aaPredicted RBP19.51■□□□□ 0.71
COL4A1-205ENST00000615732 IFT140Q96RY7 1462 aa19.49■□□□□ 0.71
COL4A1-205ENST00000615732 RIMBP3CA6NJZ7 1639 aa19.48■□□□□ 0.71
COL4A1-205ENST00000615732 RIMBP3BA6NNM3 1639 aa19.48■□□□□ 0.71
COL4A1-205ENST00000615732 RIMBP3Q9UFD9 1639 aa19.48■□□□□ 0.71
COL4A1-205ENST00000615732 TOPBP1Q92547 1522 aa19.46■□□□□ 0.71
COL4A1-205ENST00000615732 EIF4G3O43432 1585 aaKnown RBP19.42■□□□□ 0.7
COL4A1-205ENST00000615732 DNMBPQ6XZF7 1577 aa19.39■□□□□ 0.69
COL4A1-205ENST00000615732 ARHGEF11O15085 1522 aa19.38■□□□□ 0.69
COL4A1-205ENST00000615732 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
COL4A1-205ENST00000615732 TARBP1Q13395 1621 aaKnown RBP19.33■□□□□ 0.68
COL4A1-205ENST00000615732 CHD1O14646 1710 aa19.31■□□□□ 0.68
COL4A1-205ENST00000615732 AQRO60306 1485 aaKnown RBP eCLIP19.28■□□□□ 0.68
COL4A1-205ENST00000615732 POLA1P09884 1462 aaPredicted RBP19.26■□□□□ 0.67
COL4A1-205ENST00000615732 ARAP1Q96P48 1450 aa19.19■□□□□ 0.66
COL4A1-205ENST00000615732 RAD54L2Q9Y4B4 1467 aa19.19■□□□□ 0.66
COL4A1-205ENST00000615732 CYB5RLQ6IPT4 315 aa19.17■□□□□ 0.66
COL4A1-205ENST00000615732 FBLN2P98095 1184 aa19.13■□□□□ 0.65
COL4A1-205ENST00000615732 SOGA1O94964 1423 aa19.12■□□□□ 0.65
COL4A1-205ENST00000615732 TDRD9Q8NDG6 1382 aaKnown RBP19.12■□□□□ 0.65
COL4A1-205ENST00000615732 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
COL4A1-205ENST00000615732 SNAPC4Q5SXM2 1469 aa19.1■□□□□ 0.65
COL4A1-205ENST00000615732 WDR97A6NE52 1622 aa19.1■□□□□ 0.65
COL4A1-205ENST00000615732 CUX1P39880 1505 aa19.08■□□□□ 0.64
COL4A1-205ENST00000615732 CLASP1Q7Z460 1538 aa19.08■□□□□ 0.64
COL4A1-205ENST00000615732 MAGI1Q96QZ7 1491 aaPredicted RBP19.03■□□□□ 0.64
COL4A1-205ENST00000615732 SYNJ1O43426 1573 aa19.02■□□□□ 0.63
COL4A1-205ENST00000615732 TRHP20396 242 aaPredicted RBP19.01■□□□□ 0.63
COL4A1-205ENST00000615732 GRIN2BQ13224 1484 aa19■□□□□ 0.63
COL4A1-205ENST00000615732 PBRM1Q86U86 1689 aa18.97■□□□□ 0.63
COL4A1-205ENST00000615732 SYNJ2O15056 1496 aa18.97■□□□□ 0.63
COL4A1-205ENST00000615732 CHMP7Q8WUX9 453 aaPredicted RBP18.96■□□□□ 0.63
COL4A1-205ENST00000615732 SUPT5HO00267 1087 aaKnown RBP18.95■□□□□ 0.62
COL4A1-205ENST00000615732 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
COL4A1-205ENST00000615732 ABCA5Q8WWZ7 1642 aa18.9■□□□□ 0.62
COL4A1-205ENST00000615732 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
COL4A1-205ENST00000615732 ERCC6L2Q5T890 1561 aa18.78■□□□□ 0.6
COL4A1-205ENST00000615732 GRIN2AQ12879 1464 aa18.77■□□□□ 0.6
COL4A1-205ENST00000615732 ADAMTS12P58397 1594 aa18.77■□□□□ 0.6
COL4A1-205ENST00000615732 CEP170Q5SW79 1584 aa18.75■□□□□ 0.59
COL4A1-205ENST00000615732 BIVM-ERCC5R4GMW8 1640 aa18.74■□□□□ 0.59
COL4A1-205ENST00000615732 NUP160Q12769 1436 aa18.72■□□□□ 0.59
COL4A1-205ENST00000615732 WRNQ14191 1432 aaPredicted RBP eCLIP18.72■□□□□ 0.59
COL4A1-205ENST00000615732 TOP2BQ02880 1626 aa18.71■□□□□ 0.59
COL4A1-205ENST00000615732 SHROOM2Q13796 1616 aa18.68■□□□□ 0.58
COL4A1-205ENST00000615732 FHAD1B1AJZ9 1412 aa18.66■□□□□ 0.58
COL4A1-205ENST00000615732 ERICH3Q5RHP9 1530 aa18.63■□□□□ 0.57
COL4A1-205ENST00000615732 AEBP2Q6ZN18 517 aaPredicted RBP18.57■□□□□ 0.56
COL4A1-205ENST00000615732 KIF13AQ9H1H9 1805 aa18.53■□□□□ 0.56
COL4A1-205ENST00000615732 RUSC2Q8N2Y8 1516 aa18.53■□□□□ 0.56
COL4A1-205ENST00000615732 PRG4Q92954 1404 aaPredicted RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms