RNA–Protein interactions for RNA: ENST00000615061.4

CBWD3-211, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,771 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-211ENST00000615061 NISCHQ9Y2I1 1504 aa40.75■■■■■ 4.11
CBWD3-211ENST00000615061 CCDC180Q9P1Z9 1646 aa36.2■■■■□ 3.39
CBWD3-211ENST00000615061 ABCC9O60706 1549 aa35.55■■■■□ 3.28
CBWD3-211ENST00000615061 DCAF8L2P0C7V8 631 aa34.13■■■■□ 3.05
CBWD3-211ENST00000615061 RB1CC1Q8TDY2 1594 aa34.09■■■■□ 3.05
CBWD3-211ENST00000615061 NACADO15069 1562 aa34.03■■■■□ 3.04
CBWD3-211ENST00000615061 ZCCHC6Q5VYS8 1495 aaKnown RBP33.93■■■■□ 3.02
CBWD3-211ENST00000615061 MYO15BQ96JP2 1530 aa33.78■■■■□ 3
CBWD3-211ENST00000615061 DCAF1Q9Y4B6 1507 aa33.64■■■□□ 2.98
CBWD3-211ENST00000615061 UNC13AQ9UPW8 1703 aa33.44■■■□□ 2.94
CBWD3-211ENST00000615061 PABPN1Q86U42 306 aaKnown RBP eCLIP33.24■■■□□ 2.91
CBWD3-211ENST00000615061 BICRAQ9NZM4 1560 aa33.14■■■□□ 2.9
CBWD3-211ENST00000615061 SCRIBQ14160 1630 aa33.12■■■□□ 2.89
CBWD3-211ENST00000615061 DNAJC5BQ9UF47 199 aa32.7■■■□□ 2.83
CBWD3-211ENST00000615061 SHROOM4Q9ULL8 1493 aa32.63■■■□□ 2.81
CBWD3-211ENST00000615061 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
CBWD3-211ENST00000615061 CC2D2AQ9P2K1 1620 aa32.14■■■□□ 2.74
CBWD3-211ENST00000615061 CECR2Q9BXF3 1484 aa31.91■■■□□ 2.7
CBWD3-211ENST00000615061 SMARCA4P51532 1647 aa31.64■■■□□ 2.66
CBWD3-211ENST00000615061 BAZ1AQ9NRL2 1556 aaPredicted RBP31.56■■■□□ 2.64
CBWD3-211ENST00000615061 ATAD2BQ9ULI0 1458 aa31.47■■■□□ 2.63
CBWD3-211ENST00000615061 MROH2BQ7Z745 1585 aa31.45■■■□□ 2.63
CBWD3-211ENST00000615061 NCAPD3P42695 1498 aa31.42■■■□□ 2.62
CBWD3-211ENST00000615061 SMARCA2P51531 1590 aa31.38■■■□□ 2.61
CBWD3-211ENST00000615061 PEG3Q9GZU2 1588 aa31.29■■■□□ 2.6
CBWD3-211ENST00000615061 HMGXB3Q12766 1538 aa31.26■■■□□ 2.59
CBWD3-211ENST00000615061 BAZ1BQ9UIG0 1483 aaKnown RBP31.2■■■□□ 2.59
CBWD3-211ENST00000615061 WIZO95785 1651 aa31.13■■■□□ 2.57
CBWD3-211ENST00000615061 RSF1Q96T23 1441 aaPredicted RBP31.06■■■□□ 2.56
CBWD3-211ENST00000615061 NESP48681 1621 aa30.78■■■□□ 2.52
CBWD3-211ENST00000615061 TOP2AP11388 1531 aaKnown RBP30.72■■■□□ 2.51
CBWD3-211ENST00000615061 ERCC6Q03468 1493 aa30.6■■■□□ 2.49
CBWD3-211ENST00000615061 LAMC3Q9Y6N6 1575 aa30.59■■■□□ 2.49
CBWD3-211ENST00000615061 CADPSQ9ULU8 1353 aa30.51■■■□□ 2.48
CBWD3-211ENST00000615061 KIF21AQ7Z4S6 1674 aa30.41■■■□□ 2.46
CBWD3-211ENST00000615061 CCDC88BA6NC98 1476 aa30.39■■■□□ 2.46
CBWD3-211ENST00000615061 PDS5BQ9NTI5 1447 aa30.37■■■□□ 2.45
CBWD3-211ENST00000615061 CFTRP13569 1480 aa30.33■■■□□ 2.45
CBWD3-211ENST00000615061 SUPT5HO00267 1087 aaKnown RBP30.3■■■□□ 2.44
CBWD3-211ENST00000615061 THOC2Q8NI27 1593 aaKnown RBP30.27■■■□□ 2.44
CBWD3-211ENST00000615061 CUX2O14529 1486 aa30.23■■■□□ 2.43
CBWD3-211ENST00000615061 FANCD2Q9BXW9 1451 aa30.19■■■□□ 2.42
CBWD3-211ENST00000615061 CEP164Q9UPV0 1460 aa30.13■■■□□ 2.41
CBWD3-211ENST00000615061 PRDM2Q13029 1718 aa30.12■■■□□ 2.41
CBWD3-211ENST00000615061 MRC2Q9UBG0 1479 aa30.1■■■□□ 2.41
CBWD3-211ENST00000615061 WDR62O43379 1518 aa30■■■□□ 2.39
CBWD3-211ENST00000615061 URB2Q14146 1524 aaKnown RBP29.91■■■□□ 2.38
CBWD3-211ENST00000615061 TOPBP1Q92547 1522 aa29.71■■■□□ 2.35
CBWD3-211ENST00000615061 DNMBPQ6XZF7 1577 aa29.65■■■□□ 2.34
CBWD3-211ENST00000615061 ABCC8Q09428 1581 aa29.62■■■□□ 2.33
CBWD3-211ENST00000615061 CUX1P39880 1505 aa29.49■■■□□ 2.31
CBWD3-211ENST00000615061 IFT140Q96RY7 1462 aa29.49■■■□□ 2.31
CBWD3-211ENST00000615061 POLA1P09884 1462 aaPredicted RBP29.46■■■□□ 2.31
CBWD3-211ENST00000615061 ZNF608Q9ULD9 1512 aaPredicted RBP29.45■■■□□ 2.3
CBWD3-211ENST00000615061 TARBP1Q13395 1621 aaKnown RBP29.4■■■□□ 2.3
CBWD3-211ENST00000615061 FGD5Q6ZNL6 1462 aa29.39■■■□□ 2.3
CBWD3-211ENST00000615061 DNAJC5Q9H3Z4 198 aa29.39■■■□□ 2.29
CBWD3-211ENST00000615061 RAD54L2Q9Y4B4 1467 aa29.37■■■□□ 2.29
CBWD3-211ENST00000615061 SOGA1O94964 1423 aa29.32■■■□□ 2.28
CBWD3-211ENST00000615061 EIF4G3O43432 1585 aaKnown RBP29.3■■■□□ 2.28
CBWD3-211ENST00000615061 AQRO60306 1485 aaKnown RBP eCLIP29.26■■■□□ 2.28
CBWD3-211ENST00000615061 WRNQ14191 1432 aaPredicted RBP eCLIP29.26■■■□□ 2.27
CBWD3-211ENST00000615061 SYNJ1O43426 1573 aa29.24■■■□□ 2.27
CBWD3-211ENST00000615061 TOP2BQ02880 1626 aa29.21■■■□□ 2.27
CBWD3-211ENST00000615061 BIVM-ERCC5R4GMW8 1640 aa29.21■■■□□ 2.27
CBWD3-211ENST00000615061 TDRD9Q8NDG6 1382 aaKnown RBP29.2■■■□□ 2.27
CBWD3-211ENST00000615061 WDR97A6NE52 1622 aa29.15■■■□□ 2.26
CBWD3-211ENST00000615061 ABCA10Q8WWZ4 1543 aa29.07■■■□□ 2.24
CBWD3-211ENST00000615061 OSCARQ8IYS5 282 aa29.01■■■□□ 2.23
CBWD3-211ENST00000615061 GAPVD1Q14C86 1478 aa28.98■■■□□ 2.23
CBWD3-211ENST00000615061 ABCA5Q8WWZ7 1642 aa28.98■■■□□ 2.23
CBWD3-211ENST00000615061 SNAPC4Q5SXM2 1469 aa28.97■■■□□ 2.23
CBWD3-211ENST00000615061 CHD1O14646 1710 aa28.96■■■□□ 2.23
CBWD3-211ENST00000615061 GRIN2BQ13224 1484 aa28.96■■■□□ 2.23
CBWD3-211ENST00000615061 PBRM1Q86U86 1689 aa28.96■■■□□ 2.23
CBWD3-211ENST00000615061 FBLN2P98095 1184 aa28.92■■■□□ 2.22
CBWD3-211ENST00000615061 MAGI1Q96QZ7 1491 aaPredicted RBP28.88■■■□□ 2.21
CBWD3-211ENST00000615061 SYNJ2O15056 1496 aa28.79■■■□□ 2.2
CBWD3-211ENST00000615061 CHMP7Q8WUX9 453 aaPredicted RBP28.78■■■□□ 2.2
CBWD3-211ENST00000615061 ADAMTS12P58397 1594 aa28.71■■■□□ 2.19
CBWD3-211ENST00000615061 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.19
CBWD3-211ENST00000615061 KIF27Q86VH2 1401 aa28.63■■■□□ 2.17
CBWD3-211ENST00000615061 FHAD1B1AJZ9 1412 aa28.62■■■□□ 2.17
CBWD3-211ENST00000615061 GRIN2AQ12879 1464 aa28.61■■■□□ 2.17
CBWD3-211ENST00000615061 CLASP1Q7Z460 1538 aa28.6■■■□□ 2.17
CBWD3-211ENST00000615061 RIMBP3CA6NJZ7 1639 aa28.6■■■□□ 2.17
CBWD3-211ENST00000615061 RIMBP3BA6NNM3 1639 aa28.6■■■□□ 2.17
CBWD3-211ENST00000615061 RIMBP3Q9UFD9 1639 aa28.6■■■□□ 2.17
CBWD3-211ENST00000615061 ARHGEF11O15085 1522 aa28.57■■■□□ 2.16
CBWD3-211ENST00000615061 TRIM41Q8WV44 630 aa28.56■■■□□ 2.16
CBWD3-211ENST00000615061 IGF1RP08069 1367 aa28.55■■■□□ 2.16
CBWD3-211ENST00000615061 CEP170Q5SW79 1584 aa28.5■■■□□ 2.15
CBWD3-211ENST00000615061 RUSC2Q8N2Y8 1516 aa28.47■■■□□ 2.15
CBWD3-211ENST00000615061 NUP160Q12769 1436 aa28.47■■■□□ 2.15
CBWD3-211ENST00000615061 CUL7Q14999 1698 aa28.44■■■□□ 2.14
CBWD3-211ENST00000615061 CARMIL1Q5VZK9 1371 aa28.37■■■□□ 2.13
CBWD3-211ENST00000615061 ARAP1Q96P48 1450 aa28.35■■■□□ 2.13
CBWD3-211ENST00000615061 CYB5RLQ6IPT4 315 aa28.33■■■□□ 2.13
CBWD3-211ENST00000615061 ERCC6L2Q5T890 1561 aa28.28■■■□□ 2.12
CBWD3-211ENST00000615061 SHROOM2Q13796 1616 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 403.7 ms