RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 NISCHQ9Y2I1 1504 aa13.93□□□□□ -0.18
CPNE3-208ENST00000614678 ABCC9O60706 1549 aa12.3□□□□□ -0.44
CPNE3-208ENST00000614678 CCDC180Q9P1Z9 1646 aa12.27□□□□□ -0.45
CPNE3-208ENST00000614678 DCAF8L2P0C7V8 631 aa11.87□□□□□ -0.51
CPNE3-208ENST00000614678 RB1CC1Q8TDY2 1594 aa11.6□□□□□ -0.55
CPNE3-208ENST00000614678 ZCCHC6Q5VYS8 1495 aaKnown RBP11.59□□□□□ -0.55
CPNE3-208ENST00000614678 PABPN1Q86U42 306 aaKnown RBP eCLIP11.57□□□□□ -0.56
CPNE3-208ENST00000614678 NACADO15069 1562 aa11.56□□□□□ -0.56
CPNE3-208ENST00000614678 UNC13AQ9UPW8 1703 aa11.5□□□□□ -0.57
CPNE3-208ENST00000614678 DNAJC5BQ9UF47 199 aa11.45□□□□□ -0.58
CPNE3-208ENST00000614678 SCRIBQ14160 1630 aa11.41□□□□□ -0.58
CPNE3-208ENST00000614678 BICRAQ9NZM4 1560 aa11.4□□□□□ -0.58
CPNE3-208ENST00000614678 MYO15BQ96JP2 1530 aa11.4□□□□□ -0.59
CPNE3-208ENST00000614678 DCAF1Q9Y4B6 1507 aa11.38□□□□□ -0.59
CPNE3-208ENST00000614678 SHROOM4Q9ULL8 1493 aa11.25□□□□□ -0.61
CPNE3-208ENST00000614678 EIF4G1Q04637 1599 aaKnown RBP11.06□□□□□ -0.64
CPNE3-208ENST00000614678 CC2D2AQ9P2K1 1620 aa11.05□□□□□ -0.64
CPNE3-208ENST00000614678 CECR2Q9BXF3 1484 aa11.01□□□□□ -0.65
CPNE3-208ENST00000614678 MROH2BQ7Z745 1585 aa10.84□□□□□ -0.67
CPNE3-208ENST00000614678 SMARCA4P51532 1647 aa10.82□□□□□ -0.68
CPNE3-208ENST00000614678 ATAD2BQ9ULI0 1458 aa10.78□□□□□ -0.68
CPNE3-208ENST00000614678 BAZ1AQ9NRL2 1556 aaPredicted RBP10.74□□□□□ -0.69
CPNE3-208ENST00000614678 WIZO95785 1651 aa10.73□□□□□ -0.69
CPNE3-208ENST00000614678 NCAPD3P42695 1498 aa10.72□□□□□ -0.69
CPNE3-208ENST00000614678 NESP48681 1621 aa10.68□□□□□ -0.7
CPNE3-208ENST00000614678 BAZ1BQ9UIG0 1483 aaKnown RBP10.67□□□□□ -0.7
CPNE3-208ENST00000614678 RSF1Q96T23 1441 aaPredicted RBP10.67□□□□□ -0.7
CPNE3-208ENST00000614678 SMARCA2P51531 1590 aa10.66□□□□□ -0.7
CPNE3-208ENST00000614678 PEG3Q9GZU2 1588 aa10.63□□□□□ -0.71
CPNE3-208ENST00000614678 HMGXB3Q12766 1538 aa10.62□□□□□ -0.71
CPNE3-208ENST00000614678 SUPT5HO00267 1087 aaKnown RBP10.52□□□□□ -0.73
CPNE3-208ENST00000614678 ERCC6Q03468 1493 aa10.5□□□□□ -0.73
CPNE3-208ENST00000614678 TOP2AP11388 1531 aaKnown RBP10.48□□□□□ -0.73
CPNE3-208ENST00000614678 KIF21AQ7Z4S6 1674 aa10.46□□□□□ -0.73
CPNE3-208ENST00000614678 CCDC88BA6NC98 1476 aa10.45□□□□□ -0.74
CPNE3-208ENST00000614678 CADPSQ9ULU8 1353 aa10.44□□□□□ -0.74
CPNE3-208ENST00000614678 LAMC3Q9Y6N6 1575 aa10.41□□□□□ -0.74
CPNE3-208ENST00000614678 THOC2Q8NI27 1593 aaKnown RBP10.38□□□□□ -0.75
CPNE3-208ENST00000614678 CFTRP13569 1480 aa10.37□□□□□ -0.75
CPNE3-208ENST00000614678 FANCD2Q9BXW9 1451 aa10.35□□□□□ -0.75
CPNE3-208ENST00000614678 PDS5BQ9NTI5 1447 aa10.35□□□□□ -0.75
CPNE3-208ENST00000614678 CEP164Q9UPV0 1460 aa10.3□□□□□ -0.76
CPNE3-208ENST00000614678 URB2Q14146 1524 aaKnown RBP10.3□□□□□ -0.76
CPNE3-208ENST00000614678 CUX2O14529 1486 aa10.28□□□□□ -0.76
CPNE3-208ENST00000614678 MRC2Q9UBG0 1479 aa10.28□□□□□ -0.76
CPNE3-208ENST00000614678 WDR62O43379 1518 aa10.25□□□□□ -0.77
CPNE3-208ENST00000614678 PRDM2Q13029 1718 aa10.21□□□□□ -0.77
CPNE3-208ENST00000614678 ZNF608Q9ULD9 1512 aaPredicted RBP10.19□□□□□ -0.78
CPNE3-208ENST00000614678 TOPBP1Q92547 1522 aa10.18□□□□□ -0.78
CPNE3-208ENST00000614678 RAD54L2Q9Y4B4 1467 aa10.16□□□□□ -0.78
CPNE3-208ENST00000614678 ABCC8Q09428 1581 aa10.15□□□□□ -0.78
CPNE3-208ENST00000614678 DNAJC5Q9H3Z4 198 aa10.15□□□□□ -0.79
CPNE3-208ENST00000614678 CUX1P39880 1505 aa10.14□□□□□ -0.79
CPNE3-208ENST00000614678 AQRO60306 1485 aaKnown RBP eCLIP10.12□□□□□ -0.79
CPNE3-208ENST00000614678 POLA1P09884 1462 aaPredicted RBP10.12□□□□□ -0.79
CPNE3-208ENST00000614678 DNMBPQ6XZF7 1577 aa10.11□□□□□ -0.79
CPNE3-208ENST00000614678 TDRD9Q8NDG6 1382 aaKnown RBP10.1□□□□□ -0.79
CPNE3-208ENST00000614678 FGD5Q6ZNL6 1462 aa10.09□□□□□ -0.79
CPNE3-208ENST00000614678 TARBP1Q13395 1621 aaKnown RBP10.07□□□□□ -0.8
CPNE3-208ENST00000614678 SYNJ1O43426 1573 aa10.06□□□□□ -0.8
CPNE3-208ENST00000614678 SOGA1O94964 1423 aa10.06□□□□□ -0.8
CPNE3-208ENST00000614678 EIF4G3O43432 1585 aaKnown RBP10.05□□□□□ -0.8
CPNE3-208ENST00000614678 IFT140Q96RY7 1462 aa10.05□□□□□ -0.8
CPNE3-208ENST00000614678 FBLN2P98095 1184 aa10.03□□□□□ -0.8
CPNE3-208ENST00000614678 WRNQ14191 1432 aaPredicted RBP eCLIP10.01□□□□□ -0.81
CPNE3-208ENST00000614678 TOP2BQ02880 1626 aa9.96□□□□□ -0.81
CPNE3-208ENST00000614678 WDR97A6NE52 1622 aa9.96□□□□□ -0.82
CPNE3-208ENST00000614678 OSCARQ8IYS5 282 aa9.96□□□□□ -0.82
CPNE3-208ENST00000614678 SNAPC4Q5SXM2 1469 aa9.96□□□□□ -0.82
CPNE3-208ENST00000614678 CHD1O14646 1710 aa9.95□□□□□ -0.82
CPNE3-208ENST00000614678 BIVM-ERCC5R4GMW8 1640 aa9.94□□□□□ -0.82
CPNE3-208ENST00000614678 TRIM41Q8WV44 630 aa9.93□□□□□ -0.82
CPNE3-208ENST00000614678 GAPVD1Q14C86 1478 aa9.92□□□□□ -0.82
CPNE3-208ENST00000614678 ABCA10Q8WWZ4 1543 aa9.92□□□□□ -0.82
CPNE3-208ENST00000614678 ABCA5Q8WWZ7 1642 aa9.9□□□□□ -0.82
CPNE3-208ENST00000614678 PBRM1Q86U86 1689 aa9.9□□□□□ -0.82
CPNE3-208ENST00000614678 RUSC2Q8N2Y8 1516 aa9.89□□□□□ -0.83
CPNE3-208ENST00000614678 CHMP7Q8WUX9 453 aaPredicted RBP9.89□□□□□ -0.83
CPNE3-208ENST00000614678 GRIN2BQ13224 1484 aa9.88□□□□□ -0.83
CPNE3-208ENST00000614678 RIMBP3CA6NJZ7 1639 aa9.84□□□□□ -0.83
CPNE3-208ENST00000614678 RIMBP3BA6NNM3 1639 aa9.84□□□□□ -0.83
CPNE3-208ENST00000614678 RIMBP3Q9UFD9 1639 aa9.84□□□□□ -0.83
CPNE3-208ENST00000614678 CYB5RLQ6IPT4 315 aa9.83□□□□□ -0.84
CPNE3-208ENST00000614678 ARHGEF11O15085 1522 aa9.83□□□□□ -0.84
CPNE3-208ENST00000614678 SYNJ2O15056 1496 aa9.83□□□□□ -0.84
CPNE3-208ENST00000614678 MAGI1Q96QZ7 1491 aaPredicted RBP9.82□□□□□ -0.84
CPNE3-208ENST00000614678 ERCC6L2Q5T890 1561 aa9.82□□□□□ -0.84
CPNE3-208ENST00000614678 ADAMTS12P58397 1594 aa9.81□□□□□ -0.84
CPNE3-208ENST00000614678 IGF1RP08069 1367 aa9.81□□□□□ -0.84
CPNE3-208ENST00000614678 CEP170Q5SW79 1584 aa9.8□□□□□ -0.84
CPNE3-208ENST00000614678 GRIN2AQ12879 1464 aa9.8□□□□□ -0.84
CPNE3-208ENST00000614678 EHMT2Q96KQ7 1210 aa9.79□□□□□ -0.84
CPNE3-208ENST00000614678 CLASP1Q7Z460 1538 aa9.78□□□□□ -0.84
CPNE3-208ENST00000614678 FAM9AQ8IZU1 332 aaPredicted RBP9.78□□□□□ -0.84
CPNE3-208ENST00000614678 ARAP1Q96P48 1450 aa9.77□□□□□ -0.85
CPNE3-208ENST00000614678 FHAD1B1AJZ9 1412 aa9.76□□□□□ -0.85
CPNE3-208ENST00000614678 ERICH3Q5RHP9 1530 aa9.76□□□□□ -0.85
CPNE3-208ENST00000614678 KIF27Q86VH2 1401 aa9.76□□□□□ -0.85
CPNE3-208ENST00000614678 TTBK1Q5TCY1 1321 aaPredicted RBP9.75□□□□□ -0.85
CPNE3-208ENST00000614678 CHIC1Q5VXU3 224 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms