RNA–Protein interactions for RNA: ENST00000614502.4

PDLIM2-218, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2 BASIC

Gene PDLIM2, Length 599 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-218ENST00000614502 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
PDLIM2-218ENST00000614502 ABCC9O60706 1549 aa27.31■■□□□ 1.96
PDLIM2-218ENST00000614502 CCDC180Q9P1Z9 1646 aa27.16■■□□□ 1.94
PDLIM2-218ENST00000614502 RB1CC1Q8TDY2 1594 aa25.89■■□□□ 1.73
PDLIM2-218ENST00000614502 DNAJC5BQ9UF47 199 aa25.76■■□□□ 1.71
PDLIM2-218ENST00000614502 NACADO15069 1562 aa25.67■■□□□ 1.7
PDLIM2-218ENST00000614502 DCAF8L2P0C7V8 631 aa25.53■■□□□ 1.68
PDLIM2-218ENST00000614502 UNC13AQ9UPW8 1703 aa25.46■■□□□ 1.67
PDLIM2-218ENST00000614502 PABPN1Q86U42 306 aaKnown RBP eCLIP25.4■■□□□ 1.66
PDLIM2-218ENST00000614502 MYO15BQ96JP2 1530 aa25.27■■□□□ 1.64
PDLIM2-218ENST00000614502 BICRAQ9NZM4 1560 aa25.22■■□□□ 1.63
PDLIM2-218ENST00000614502 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
PDLIM2-218ENST00000614502 DCAF1Q9Y4B6 1507 aa24.98■■□□□ 1.59
PDLIM2-218ENST00000614502 SCRIBQ14160 1630 aa24.8■■□□□ 1.56
PDLIM2-218ENST00000614502 SHROOM4Q9ULL8 1493 aa24.73■■□□□ 1.55
PDLIM2-218ENST00000614502 CC2D2AQ9P2K1 1620 aa24.68■■□□□ 1.54
PDLIM2-218ENST00000614502 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
PDLIM2-218ENST00000614502 EIF4G1Q04637 1599 aaKnown RBP24.58■■□□□ 1.52
PDLIM2-218ENST00000614502 NCAPD3P42695 1498 aa23.69■■□□□ 1.38
PDLIM2-218ENST00000614502 DNAJC5Q9H3Z4 198 aa23.65■■□□□ 1.38
PDLIM2-218ENST00000614502 ATAD2BQ9ULI0 1458 aa23.63■■□□□ 1.37
PDLIM2-218ENST00000614502 SMARCA4P51532 1647 aa23.62■■□□□ 1.37
PDLIM2-218ENST00000614502 SMARCA2P51531 1590 aa23.54■■□□□ 1.36
PDLIM2-218ENST00000614502 ERCC6Q03468 1493 aa23.54■■□□□ 1.36
PDLIM2-218ENST00000614502 HMGXB3Q12766 1538 aa23.53■■□□□ 1.36
PDLIM2-218ENST00000614502 CUX2O14529 1486 aa23.52■■□□□ 1.36
PDLIM2-218ENST00000614502 NESP48681 1621 aa23.46■■□□□ 1.35
PDLIM2-218ENST00000614502 BAZ1AQ9NRL2 1556 aaPredicted RBP23.45■■□□□ 1.34
PDLIM2-218ENST00000614502 BAZ1BQ9UIG0 1483 aaKnown RBP23.39■■□□□ 1.34
PDLIM2-218ENST00000614502 PEG3Q9GZU2 1588 aa23.35■■□□□ 1.33
PDLIM2-218ENST00000614502 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
PDLIM2-218ENST00000614502 THOC2Q8NI27 1593 aaKnown RBP23.23■■□□□ 1.31
PDLIM2-218ENST00000614502 LAMC3Q9Y6N6 1575 aa23.2■■□□□ 1.3
PDLIM2-218ENST00000614502 KIF21AQ7Z4S6 1674 aa23.18■■□□□ 1.3
PDLIM2-218ENST00000614502 WIZO95785 1651 aa23.06■■□□□ 1.28
PDLIM2-218ENST00000614502 PDS5BQ9NTI5 1447 aa23.03■■□□□ 1.28
PDLIM2-218ENST00000614502 CADPSQ9ULU8 1353 aa22.97■■□□□ 1.27
PDLIM2-218ENST00000614502 MRC2Q9UBG0 1479 aa22.88■■□□□ 1.25
PDLIM2-218ENST00000614502 WDR62O43379 1518 aa22.85■■□□□ 1.25
PDLIM2-218ENST00000614502 CEP164Q9UPV0 1460 aa22.76■■□□□ 1.23
PDLIM2-218ENST00000614502 RSF1Q96T23 1441 aaPredicted RBP22.75■■□□□ 1.23
PDLIM2-218ENST00000614502 FANCD2Q9BXW9 1451 aa22.73■■□□□ 1.23
PDLIM2-218ENST00000614502 TOP2AP11388 1531 aaKnown RBP22.71■■□□□ 1.23
PDLIM2-218ENST00000614502 CFTRP13569 1480 aa22.7■■□□□ 1.22
PDLIM2-218ENST00000614502 TRIM41Q8WV44 630 aa22.6■■□□□ 1.21
PDLIM2-218ENST00000614502 URB2Q14146 1524 aaKnown RBP22.6■■□□□ 1.21
PDLIM2-218ENST00000614502 PRDM2Q13029 1718 aa22.54■■□□□ 1.2
PDLIM2-218ENST00000614502 CCDC88BA6NC98 1476 aa22.44■■□□□ 1.18
PDLIM2-218ENST00000614502 OSCARQ8IYS5 282 aa22.41■■□□□ 1.18
PDLIM2-218ENST00000614502 ZNF608Q9ULD9 1512 aaPredicted RBP22.35■■□□□ 1.17
PDLIM2-218ENST00000614502 TOPBP1Q92547 1522 aa22.31■■□□□ 1.16
PDLIM2-218ENST00000614502 IFT140Q96RY7 1462 aa22.29■■□□□ 1.16
PDLIM2-218ENST00000614502 RIMBP3CA6NJZ7 1639 aa22.24■■□□□ 1.15
PDLIM2-218ENST00000614502 RIMBP3BA6NNM3 1639 aa22.24■■□□□ 1.15
PDLIM2-218ENST00000614502 RIMBP3Q9UFD9 1639 aa22.24■■□□□ 1.15
PDLIM2-218ENST00000614502 EIF4G3O43432 1585 aaKnown RBP22.22■■□□□ 1.15
PDLIM2-218ENST00000614502 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
PDLIM2-218ENST00000614502 DNMBPQ6XZF7 1577 aa22.21■■□□□ 1.15
PDLIM2-218ENST00000614502 TARBP1Q13395 1621 aaKnown RBP22.15■■□□□ 1.14
PDLIM2-218ENST00000614502 CHD1O14646 1710 aa22.12■■□□□ 1.13
PDLIM2-218ENST00000614502 ARHGEF11O15085 1522 aa22.11■■□□□ 1.13
PDLIM2-218ENST00000614502 AQRO60306 1485 aaKnown RBP eCLIP22.1■■□□□ 1.13
PDLIM2-218ENST00000614502 POLA1P09884 1462 aaPredicted RBP22.08■■□□□ 1.12
PDLIM2-218ENST00000614502 RAD54L2Q9Y4B4 1467 aa22.03■■□□□ 1.12
PDLIM2-218ENST00000614502 FBLN2P98095 1184 aa21.94■■□□□ 1.1
PDLIM2-218ENST00000614502 TDRD9Q8NDG6 1382 aaKnown RBP21.94■■□□□ 1.1
PDLIM2-218ENST00000614502 SOGA1O94964 1423 aa21.94■■□□□ 1.1
PDLIM2-218ENST00000614502 CYB5RLQ6IPT4 315 aa21.93■■□□□ 1.1
PDLIM2-218ENST00000614502 FGD5Q6ZNL6 1462 aa21.93■■□□□ 1.1
PDLIM2-218ENST00000614502 CUX1P39880 1505 aa21.91■■□□□ 1.1
PDLIM2-218ENST00000614502 ARAP1Q96P48 1450 aa21.91■■□□□ 1.1
PDLIM2-218ENST00000614502 SNAPC4Q5SXM2 1469 aa21.88■■□□□ 1.09
PDLIM2-218ENST00000614502 WDR97A6NE52 1622 aa21.86■■□□□ 1.09
PDLIM2-218ENST00000614502 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
PDLIM2-218ENST00000614502 CLASP1Q7Z460 1538 aa21.8■■□□□ 1.08
PDLIM2-218ENST00000614502 MAGI1Q96QZ7 1491 aaPredicted RBP21.77■■□□□ 1.08
PDLIM2-218ENST00000614502 GRIN2BQ13224 1484 aa21.76■■□□□ 1.07
PDLIM2-218ENST00000614502 PBRM1Q86U86 1689 aa21.75■■□□□ 1.07
PDLIM2-218ENST00000614502 SYNJ1O43426 1573 aa21.74■■□□□ 1.07
PDLIM2-218ENST00000614502 CHMP7Q8WUX9 453 aaPredicted RBP21.74■■□□□ 1.07
PDLIM2-218ENST00000614502 TRHP20396 242 aaPredicted RBP21.71■■□□□ 1.07
PDLIM2-218ENST00000614502 SYNJ2O15056 1496 aa21.71■■□□□ 1.07
PDLIM2-218ENST00000614502 GAPVD1Q14C86 1478 aa21.68■■□□□ 1.06
PDLIM2-218ENST00000614502 ABCA5Q8WWZ7 1642 aa21.67■■□□□ 1.06
PDLIM2-218ENST00000614502 ABCA10Q8WWZ4 1543 aa21.64■■□□□ 1.05
PDLIM2-218ENST00000614502 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
PDLIM2-218ENST00000614502 WRNQ14191 1432 aaPredicted RBP eCLIP21.55■■□□□ 1.04
PDLIM2-218ENST00000614502 TOP2BQ02880 1626 aa21.54■■□□□ 1.04
PDLIM2-218ENST00000614502 ERCC6L2Q5T890 1561 aa21.52■■□□□ 1.04
PDLIM2-218ENST00000614502 ADAMTS12P58397 1594 aa21.51■■□□□ 1.03
PDLIM2-218ENST00000614502 GRIN2AQ12879 1464 aa21.5■■□□□ 1.03
PDLIM2-218ENST00000614502 CEP170Q5SW79 1584 aa21.48■■□□□ 1.03
PDLIM2-218ENST00000614502 NUP160Q12769 1436 aa21.43■■□□□ 1.02
PDLIM2-218ENST00000614502 SHROOM2Q13796 1616 aa21.39■■□□□ 1.01
PDLIM2-218ENST00000614502 FHAD1B1AJZ9 1412 aa21.38■■□□□ 1.01
PDLIM2-218ENST00000614502 ERICH3Q5RHP9 1530 aa21.37■■□□□ 1.01
PDLIM2-218ENST00000614502 PRG4Q92954 1404 aaPredicted RBP21.23■□□□□ 0.99
PDLIM2-218ENST00000614502 RUSC2Q8N2Y8 1516 aa21.22■□□□□ 0.99
PDLIM2-218ENST00000614502 KIF13AQ9H1H9 1805 aa21.22■□□□□ 0.99
PDLIM2-218ENST00000614502 JPH4Q96JJ6 628 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms