RNA–Protein interactions for RNA: ENST00000613988.4

CBWD1-223, Transcript of COBW domain containing 1, humanhuman

TSL 2

Gene CBWD1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD1-223ENST00000613988 NISCHQ9Y2I1 1504 aa53.86■■■■■ 6.21
CBWD1-223ENST00000613988 CCDC180Q9P1Z9 1646 aa48.19■■■■■ 5.3
CBWD1-223ENST00000613988 ABCC9O60706 1549 aa48■■■■■ 5.28
CBWD1-223ENST00000613988 RB1CC1Q8TDY2 1594 aa45.78■■■■■ 4.92
CBWD1-223ENST00000613988 NACADO15069 1562 aa45.53■■■■■ 4.88
CBWD1-223ENST00000613988 DCAF8L2P0C7V8 631 aa45.49■■■■■ 4.87
CBWD1-223ENST00000613988 MYO15BQ96JP2 1530 aa44.96■■■■■ 4.79
CBWD1-223ENST00000613988 DNAJC5BQ9UF47 199 aa44.82■■■■■ 4.77
CBWD1-223ENST00000613988 PABPN1Q86U42 306 aaKnown RBP eCLIP44.78■■■■■ 4.76
CBWD1-223ENST00000613988 UNC13AQ9UPW8 1703 aa44.72■■■■■ 4.75
CBWD1-223ENST00000613988 ZCCHC6Q5VYS8 1495 aaKnown RBP44.65■■■■■ 4.74
CBWD1-223ENST00000613988 DCAF1Q9Y4B6 1507 aa44.48■■■■■ 4.71
CBWD1-223ENST00000613988 BICRAQ9NZM4 1560 aa44.41■■■■■ 4.7
CBWD1-223ENST00000613988 SCRIBQ14160 1630 aa43.96■■■■■ 4.63
CBWD1-223ENST00000613988 SHROOM4Q9ULL8 1493 aa43.84■■■■■ 4.61
CBWD1-223ENST00000613988 CC2D2AQ9P2K1 1620 aa43.35■■■■■ 4.53
CBWD1-223ENST00000613988 EIF4G1Q04637 1599 aaKnown RBP43.32■■■■■ 4.53
CBWD1-223ENST00000613988 CECR2Q9BXF3 1484 aa43.22■■■■■ 4.51
CBWD1-223ENST00000613988 NCAPD3P42695 1498 aa42.04■■■■■ 4.32
CBWD1-223ENST00000613988 SMARCA4P51532 1647 aa41.94■■■■■ 4.3
CBWD1-223ENST00000613988 ATAD2BQ9ULI0 1458 aa41.94■■■■■ 4.3
CBWD1-223ENST00000613988 SMARCA2P51531 1590 aa41.84■■■■■ 4.29
CBWD1-223ENST00000613988 BAZ1AQ9NRL2 1556 aaPredicted RBP41.79■■■■■ 4.28
CBWD1-223ENST00000613988 HMGXB3Q12766 1538 aa41.72■■■■■ 4.27
CBWD1-223ENST00000613988 BAZ1BQ9UIG0 1483 aaKnown RBP41.56■■■■■ 4.24
CBWD1-223ENST00000613988 PEG3Q9GZU2 1588 aa41.52■■■■■ 4.24
CBWD1-223ENST00000613988 MROH2BQ7Z745 1585 aa41.5■■■■■ 4.23
CBWD1-223ENST00000613988 ERCC6Q03468 1493 aa41.46■■■■■ 4.23
CBWD1-223ENST00000613988 NESP48681 1621 aa41.3■■■■■ 4.2
CBWD1-223ENST00000613988 CUX2O14529 1486 aa41.25■■■■■ 4.19
CBWD1-223ENST00000613988 LAMC3Q9Y6N6 1575 aa41.04■■■■■ 4.16
CBWD1-223ENST00000613988 WIZO95785 1651 aa41.02■■■■■ 4.16
CBWD1-223ENST00000613988 DNAJC5Q9H3Z4 198 aa41■■■■■ 4.15
CBWD1-223ENST00000613988 PDS5BQ9NTI5 1447 aa40.84■■■■■ 4.13
CBWD1-223ENST00000613988 CADPSQ9ULU8 1353 aa40.8■■■■■ 4.12
CBWD1-223ENST00000613988 THOC2Q8NI27 1593 aaKnown RBP40.78■■■■■ 4.12
CBWD1-223ENST00000613988 KIF21AQ7Z4S6 1674 aa40.75■■■■■ 4.11
CBWD1-223ENST00000613988 RSF1Q96T23 1441 aaPredicted RBP40.74■■■■■ 4.11
CBWD1-223ENST00000613988 TOP2AP11388 1531 aaKnown RBP40.5■■■■■ 4.07
CBWD1-223ENST00000613988 MRC2Q9UBG0 1479 aa40.44■■■■■ 4.06
CBWD1-223ENST00000613988 CFTRP13569 1480 aa40.36■■■■■ 4.05
CBWD1-223ENST00000613988 CEP164Q9UPV0 1460 aa40.33■■■■■ 4.05
CBWD1-223ENST00000613988 FANCD2Q9BXW9 1451 aa40.31■■■■■ 4.04
CBWD1-223ENST00000613988 WDR62O43379 1518 aa40.31■■■■■ 4.04
CBWD1-223ENST00000613988 CCDC88BA6NC98 1476 aa40.08■■■■■ 4.01
CBWD1-223ENST00000613988 PRDM2Q13029 1718 aa39.94■■■■□ 3.98
CBWD1-223ENST00000613988 URB2Q14146 1524 aaKnown RBP39.94■■■■□ 3.98
CBWD1-223ENST00000613988 TOPBP1Q92547 1522 aa39.57■■■■□ 3.92
CBWD1-223ENST00000613988 ABCC8Q09428 1581 aa39.53■■■■□ 3.92
CBWD1-223ENST00000613988 IFT140Q96RY7 1462 aa39.52■■■■□ 3.92
CBWD1-223ENST00000613988 OSCARQ8IYS5 282 aa39.49■■■■□ 3.91
CBWD1-223ENST00000613988 DNMBPQ6XZF7 1577 aa39.44■■■■□ 3.9
CBWD1-223ENST00000613988 ZNF608Q9ULD9 1512 aaPredicted RBP39.43■■■■□ 3.9
CBWD1-223ENST00000613988 TRIM41Q8WV44 630 aa39.34■■■■□ 3.89
CBWD1-223ENST00000613988 SUPT5HO00267 1087 aaKnown RBP39.21■■■■□ 3.87
CBWD1-223ENST00000613988 EIF4G3O43432 1585 aaKnown RBP39.2■■■■□ 3.87
CBWD1-223ENST00000613988 POLA1P09884 1462 aaPredicted RBP39.18■■■■□ 3.86
CBWD1-223ENST00000613988 TARBP1Q13395 1621 aaKnown RBP39.18■■■■□ 3.86
CBWD1-223ENST00000613988 AQRO60306 1485 aaKnown RBP eCLIP39.13■■■■□ 3.85
CBWD1-223ENST00000613988 SOGA1O94964 1423 aa39.05■■■■□ 3.84
CBWD1-223ENST00000613988 RAD54L2Q9Y4B4 1467 aa39.05■■■■□ 3.84
CBWD1-223ENST00000613988 FGD5Q6ZNL6 1462 aa38.98■■■■□ 3.83
CBWD1-223ENST00000613988 CUX1P39880 1505 aa38.96■■■■□ 3.83
CBWD1-223ENST00000613988 TDRD9Q8NDG6 1382 aaKnown RBP38.94■■■■□ 3.82
CBWD1-223ENST00000613988 FBLN2P98095 1184 aa38.89■■■■□ 3.82
CBWD1-223ENST00000613988 CHD1O14646 1710 aa38.87■■■■□ 3.81
CBWD1-223ENST00000613988 RIMBP3CA6NJZ7 1639 aa38.87■■■■□ 3.81
CBWD1-223ENST00000613988 RIMBP3BA6NNM3 1639 aa38.87■■■■□ 3.81
CBWD1-223ENST00000613988 RIMBP3Q9UFD9 1639 aa38.87■■■■□ 3.81
CBWD1-223ENST00000613988 WDR97A6NE52 1622 aa38.8■■■■□ 3.8
CBWD1-223ENST00000613988 ARHGEF11O15085 1522 aa38.77■■■■□ 3.8
CBWD1-223ENST00000613988 SNAPC4Q5SXM2 1469 aa38.71■■■■□ 3.79
CBWD1-223ENST00000613988 GRIN2BQ13224 1484 aa38.66■■■■□ 3.78
CBWD1-223ENST00000613988 CHMP7Q8WUX9 453 aaPredicted RBP38.64■■■■□ 3.78
CBWD1-223ENST00000613988 MAGI1Q96QZ7 1491 aaPredicted RBP38.62■■■■□ 3.77
CBWD1-223ENST00000613988 CYB5RLQ6IPT4 315 aa38.57■■■■□ 3.76
CBWD1-223ENST00000613988 GAPVD1Q14C86 1478 aa38.56■■■■□ 3.76
CBWD1-223ENST00000613988 ABCA10Q8WWZ4 1543 aa38.55■■■■□ 3.76
CBWD1-223ENST00000613988 SYNJ2O15056 1496 aa38.5■■■■□ 3.75
CBWD1-223ENST00000613988 PBRM1Q86U86 1689 aa38.5■■■■□ 3.75
CBWD1-223ENST00000613988 WRNQ14191 1432 aaPredicted RBP eCLIP38.47■■■■□ 3.75
CBWD1-223ENST00000613988 SYNJ1O43426 1573 aa38.46■■■■□ 3.75
CBWD1-223ENST00000613988 ABCA5Q8WWZ7 1642 aa38.44■■■■□ 3.74
CBWD1-223ENST00000613988 TOP2BQ02880 1626 aa38.41■■■■□ 3.74
CBWD1-223ENST00000613988 CLASP1Q7Z460 1538 aa38.41■■■■□ 3.74
CBWD1-223ENST00000613988 ARAP1Q96P48 1450 aa38.4■■■■□ 3.74
CBWD1-223ENST00000613988 BIVM-ERCC5R4GMW8 1640 aa38.4■■■■□ 3.74
CBWD1-223ENST00000613988 GRIN2AQ12879 1464 aa38.15■■■■□ 3.7
CBWD1-223ENST00000613988 ADAMTS12P58397 1594 aa38.13■■■■□ 3.7
CBWD1-223ENST00000613988 FHAD1B1AJZ9 1412 aa38.08■■■■□ 3.69
CBWD1-223ENST00000613988 TRHP20396 242 aaPredicted RBP38.07■■■■□ 3.69
CBWD1-223ENST00000613988 ERICH3Q5RHP9 1530 aa38.07■■■■□ 3.68
CBWD1-223ENST00000613988 NUP160Q12769 1436 aa38■■■■□ 3.67
CBWD1-223ENST00000613988 CEP170Q5SW79 1584 aa37.98■■■■□ 3.67
CBWD1-223ENST00000613988 ERCC6L2Q5T890 1561 aa37.86■■■■□ 3.65
CBWD1-223ENST00000613988 SHROOM2Q13796 1616 aa37.79■■■■□ 3.64
CBWD1-223ENST00000613988 KIF27Q86VH2 1401 aa37.72■■■■□ 3.63
CBWD1-223ENST00000613988 JPH4Q96JJ6 628 aa37.69■■■■□ 3.62
CBWD1-223ENST00000613988 IGF1RP08069 1367 aa37.68■■■■□ 3.62
CBWD1-223ENST00000613988 PRG4Q92954 1404 aaPredicted RBP37.66■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms