RNA–Protein interactions for RNA: ENST00000613138.1

CSTF1-208, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 4

Gene CSTF1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-208ENST00000613138 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
CSTF1-208ENST00000613138 CCDC180Q9P1Z9 1646 aa27.63■■■□□ 2.01
CSTF1-208ENST00000613138 ABCC9O60706 1549 aa27.26■■□□□ 1.96
CSTF1-208ENST00000613138 DCAF8L2P0C7V8 631 aa26.08■■□□□ 1.77
CSTF1-208ENST00000613138 RB1CC1Q8TDY2 1594 aa26.04■■□□□ 1.76
CSTF1-208ENST00000613138 NACADO15069 1562 aa25.96■■□□□ 1.75
CSTF1-208ENST00000613138 ZCCHC6Q5VYS8 1495 aaKnown RBP25.87■■□□□ 1.73
CSTF1-208ENST00000613138 MYO15BQ96JP2 1530 aa25.7■■□□□ 1.7
CSTF1-208ENST00000613138 UNC13AQ9UPW8 1703 aa25.67■■□□□ 1.7
CSTF1-208ENST00000613138 DCAF1Q9Y4B6 1507 aa25.59■■□□□ 1.69
CSTF1-208ENST00000613138 PABPN1Q86U42 306 aaKnown RBP eCLIP25.49■■□□□ 1.67
CSTF1-208ENST00000613138 BICRAQ9NZM4 1560 aa25.39■■□□□ 1.66
CSTF1-208ENST00000613138 SCRIBQ14160 1630 aa25.36■■□□□ 1.65
CSTF1-208ENST00000613138 DNAJC5BQ9UF47 199 aa25.18■■□□□ 1.62
CSTF1-208ENST00000613138 SHROOM4Q9ULL8 1493 aa24.84■■□□□ 1.57
CSTF1-208ENST00000613138 EIF4G1Q04637 1599 aaKnown RBP24.67■■□□□ 1.54
CSTF1-208ENST00000613138 CC2D2AQ9P2K1 1620 aa24.64■■□□□ 1.53
CSTF1-208ENST00000613138 CECR2Q9BXF3 1484 aa24.44■■□□□ 1.5
CSTF1-208ENST00000613138 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
CSTF1-208ENST00000613138 BAZ1AQ9NRL2 1556 aaPredicted RBP24.04■■□□□ 1.44
CSTF1-208ENST00000613138 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
CSTF1-208ENST00000613138 ATAD2BQ9ULI0 1458 aa24.03■■□□□ 1.44
CSTF1-208ENST00000613138 NCAPD3P42695 1498 aa23.97■■□□□ 1.43
CSTF1-208ENST00000613138 SMARCA2P51531 1590 aa23.93■■□□□ 1.42
CSTF1-208ENST00000613138 PEG3Q9GZU2 1588 aa23.86■■□□□ 1.41
CSTF1-208ENST00000613138 HMGXB3Q12766 1538 aa23.85■■□□□ 1.41
CSTF1-208ENST00000613138 BAZ1BQ9UIG0 1483 aaKnown RBP23.81■■□□□ 1.4
CSTF1-208ENST00000613138 WIZO95785 1651 aa23.81■■□□□ 1.4
CSTF1-208ENST00000613138 RSF1Q96T23 1441 aaPredicted RBP23.67■■□□□ 1.38
CSTF1-208ENST00000613138 NESP48681 1621 aa23.61■■□□□ 1.37
CSTF1-208ENST00000613138 TOP2AP11388 1531 aaKnown RBP23.43■■□□□ 1.34
CSTF1-208ENST00000613138 ERCC6Q03468 1493 aa23.42■■□□□ 1.34
CSTF1-208ENST00000613138 LAMC3Q9Y6N6 1575 aa23.36■■□□□ 1.33
CSTF1-208ENST00000613138 KIF21AQ7Z4S6 1674 aa23.33■■□□□ 1.33
CSTF1-208ENST00000613138 CADPSQ9ULU8 1353 aa23.28■■□□□ 1.32
CSTF1-208ENST00000613138 THOC2Q8NI27 1593 aaKnown RBP23.22■■□□□ 1.31
CSTF1-208ENST00000613138 CCDC88BA6NC98 1476 aa23.2■■□□□ 1.3
CSTF1-208ENST00000613138 PDS5BQ9NTI5 1447 aa23.16■■□□□ 1.3
CSTF1-208ENST00000613138 CUX2O14529 1486 aa23.14■■□□□ 1.29
CSTF1-208ENST00000613138 CFTRP13569 1480 aa23.13■■□□□ 1.29
CSTF1-208ENST00000613138 SUPT5HO00267 1087 aaKnown RBP23.07■■□□□ 1.28
CSTF1-208ENST00000613138 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
CSTF1-208ENST00000613138 PRDM2Q13029 1718 aa23.03■■□□□ 1.28
CSTF1-208ENST00000613138 CEP164Q9UPV0 1460 aa23.02■■□□□ 1.28
CSTF1-208ENST00000613138 MRC2Q9UBG0 1479 aa23.01■■□□□ 1.27
CSTF1-208ENST00000613138 WDR62O43379 1518 aa22.95■■□□□ 1.26
CSTF1-208ENST00000613138 URB2Q14146 1524 aaKnown RBP22.9■■□□□ 1.26
CSTF1-208ENST00000613138 TOPBP1Q92547 1522 aa22.7■■□□□ 1.22
CSTF1-208ENST00000613138 DNMBPQ6XZF7 1577 aa22.64■■□□□ 1.22
CSTF1-208ENST00000613138 DNAJC5Q9H3Z4 198 aa22.59■■□□□ 1.21
CSTF1-208ENST00000613138 ZNF608Q9ULD9 1512 aaPredicted RBP22.56■■□□□ 1.2
CSTF1-208ENST00000613138 CUX1P39880 1505 aa22.54■■□□□ 1.2
CSTF1-208ENST00000613138 ABCC8Q09428 1581 aa22.53■■□□□ 1.2
CSTF1-208ENST00000613138 POLA1P09884 1462 aaPredicted RBP22.51■■□□□ 1.19
CSTF1-208ENST00000613138 IFT140Q96RY7 1462 aa22.51■■□□□ 1.19
CSTF1-208ENST00000613138 TARBP1Q13395 1621 aaKnown RBP22.49■■□□□ 1.19
CSTF1-208ENST00000613138 RAD54L2Q9Y4B4 1467 aa22.48■■□□□ 1.19
CSTF1-208ENST00000613138 FGD5Q6ZNL6 1462 aa22.45■■□□□ 1.18
CSTF1-208ENST00000613138 EIF4G3O43432 1585 aaKnown RBP22.43■■□□□ 1.18
CSTF1-208ENST00000613138 AQRO60306 1485 aaKnown RBP eCLIP22.4■■□□□ 1.183e-8■■■■■ 29
CSTF1-208ENST00000613138 SOGA1O94964 1423 aa22.38■■□□□ 1.17
CSTF1-208ENST00000613138 SYNJ1O43426 1573 aa22.34■■□□□ 1.17
CSTF1-208ENST00000613138 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
CSTF1-208ENST00000613138 WDR97A6NE52 1622 aa22.31■■□□□ 1.16
CSTF1-208ENST00000613138 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.16
CSTF1-208ENST00000613138 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
CSTF1-208ENST00000613138 TOP2BQ02880 1626 aa22.26■■□□□ 1.15
CSTF1-208ENST00000613138 CHD1O14646 1710 aa22.23■■□□□ 1.15
CSTF1-208ENST00000613138 OSCARQ8IYS5 282 aa22.17■■□□□ 1.14
CSTF1-208ENST00000613138 PBRM1Q86U86 1689 aa22.17■■□□□ 1.14
CSTF1-208ENST00000613138 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
CSTF1-208ENST00000613138 SNAPC4Q5SXM2 1469 aa22.16■■□□□ 1.14
CSTF1-208ENST00000613138 ABCA5Q8WWZ7 1642 aa22.14■■□□□ 1.14
CSTF1-208ENST00000613138 GAPVD1Q14C86 1478 aa22.12■■□□□ 1.13
CSTF1-208ENST00000613138 FBLN2P98095 1184 aa22.12■■□□□ 1.13
CSTF1-208ENST00000613138 GRIN2BQ13224 1484 aa22.1■■□□□ 1.13
CSTF1-208ENST00000613138 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
CSTF1-208ENST00000613138 SYNJ2O15056 1496 aa21.97■■□□□ 1.11
CSTF1-208ENST00000613138 CHMP7Q8WUX9 453 aaPredicted RBP21.97■■□□□ 1.11
CSTF1-208ENST00000613138 RIMBP3CA6NJZ7 1639 aa21.97■■□□□ 1.11
CSTF1-208ENST00000613138 RIMBP3BA6NNM3 1639 aa21.97■■□□□ 1.11
CSTF1-208ENST00000613138 RIMBP3Q9UFD9 1639 aa21.97■■□□□ 1.11
CSTF1-208ENST00000613138 ADAMTS12P58397 1594 aa21.94■■□□□ 1.1
CSTF1-208ENST00000613138 TRIM41Q8WV44 630 aa21.92■■□□□ 1.1
CSTF1-208ENST00000613138 ARHGEF11O15085 1522 aa21.9■■□□□ 1.1
CSTF1-208ENST00000613138 CLASP1Q7Z460 1538 aa21.9■■□□□ 1.1
CSTF1-208ENST00000613138 ERICH3Q5RHP9 1530 aa21.87■■□□□ 1.09
CSTF1-208ENST00000613138 GRIN2AQ12879 1464 aa21.84■■□□□ 1.09
CSTF1-208ENST00000613138 FHAD1B1AJZ9 1412 aa21.82■■□□□ 1.08
CSTF1-208ENST00000613138 CEP170Q5SW79 1584 aa21.82■■□□□ 1.08
CSTF1-208ENST00000613138 KIF27Q86VH2 1401 aa21.78■■□□□ 1.08
CSTF1-208ENST00000613138 IGF1RP08069 1367 aa21.76■■□□□ 1.07
CSTF1-208ENST00000613138 ARAP1Q96P48 1450 aa21.76■■□□□ 1.07
CSTF1-208ENST00000613138 RUSC2Q8N2Y8 1516 aa21.75■■□□□ 1.07
CSTF1-208ENST00000613138 NUP160Q12769 1436 aa21.74■■□□□ 1.07
CSTF1-208ENST00000613138 ERCC6L2Q5T890 1561 aa21.72■■□□□ 1.07
CSTF1-208ENST00000613138 CYB5RLQ6IPT4 315 aa21.71■■□□□ 1.07
CSTF1-208ENST00000613138 CUL7Q14999 1698 aa21.68■■□□□ 1.06
CSTF1-208ENST00000613138 SHROOM2Q13796 1616 aa21.62■■□□□ 1.05
CSTF1-208ENST00000613138 CARMIL1Q5VZK9 1371 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms