RNA–Protein interactions for RNA: ENST00000612540.1

PRKN-210, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene PRKN, Length 603 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-210ENST00000612540 NISCHQ9Y2I1 1504 aa30.01■■■□□ 2.39
PRKN-210ENST00000612540 CCDC180Q9P1Z9 1646 aa26.5■■□□□ 1.83
PRKN-210ENST00000612540 ABCC9O60706 1549 aa26.47■■□□□ 1.83
PRKN-210ENST00000612540 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
PRKN-210ENST00000612540 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
PRKN-210ENST00000612540 NACADO15069 1562 aa25.05■■□□□ 1.6
PRKN-210ENST00000612540 DCAF8L2P0C7V8 631 aa24.95■■□□□ 1.58
PRKN-210ENST00000612540 DNAJC5BQ9UF47 199 aa24.86■■□□□ 1.57
PRKN-210ENST00000612540 UNC13AQ9UPW8 1703 aa24.83■■□□□ 1.57
PRKN-210ENST00000612540 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
PRKN-210ENST00000612540 MYO15BQ96JP2 1530 aa24.73■■□□□ 1.55
PRKN-210ENST00000612540 PABPN1Q86U42 306 aaKnown RBP eCLIP24.64■■□□□ 1.54
PRKN-210ENST00000612540 BICRAQ9NZM4 1560 aa24.5■■□□□ 1.51
PRKN-210ENST00000612540 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
PRKN-210ENST00000612540 SHROOM4Q9ULL8 1493 aa24.18■■□□□ 1.46
PRKN-210ENST00000612540 CC2D2AQ9P2K1 1620 aa23.96■■□□□ 1.43
PRKN-210ENST00000612540 EIF4G1Q04637 1599 aaKnown RBP23.89■■□□□ 1.41
PRKN-210ENST00000612540 CECR2Q9BXF3 1484 aa23.86■■□□□ 1.41
PRKN-210ENST00000612540 BAZ1AQ9NRL2 1556 aaPredicted RBP23.24■■□□□ 1.31
PRKN-210ENST00000612540 SMARCA4P51532 1647 aa23.21■■□□□ 1.31
PRKN-210ENST00000612540 MROH2BQ7Z745 1585 aa23.16■■□□□ 1.3
PRKN-210ENST00000612540 NCAPD3P42695 1498 aa23.13■■□□□ 1.29
PRKN-210ENST00000612540 RSF1Q96T23 1441 aaPredicted RBP23.07■■□□□ 1.28
PRKN-210ENST00000612540 ATAD2BQ9ULI0 1458 aa23.06■■□□□ 1.28
PRKN-210ENST00000612540 SUPT5HO00267 1087 aaKnown RBP23.01■■□□□ 1.27
PRKN-210ENST00000612540 WIZO95785 1651 aa22.98■■□□□ 1.27
PRKN-210ENST00000612540 SMARCA2P51531 1590 aa22.97■■□□□ 1.27
PRKN-210ENST00000612540 HMGXB3Q12766 1538 aa22.96■■□□□ 1.27
PRKN-210ENST00000612540 PEG3Q9GZU2 1588 aa22.9■■□□□ 1.26
PRKN-210ENST00000612540 ERCC6Q03468 1493 aa22.85■■□□□ 1.25
PRKN-210ENST00000612540 CUX2O14529 1486 aa22.83■■□□□ 1.25
PRKN-210ENST00000612540 BAZ1BQ9UIG0 1483 aaKnown RBP22.81■■□□□ 1.24
PRKN-210ENST00000612540 DNAJC5Q9H3Z4 198 aa22.81■■□□□ 1.24
PRKN-210ENST00000612540 NESP48681 1621 aa22.75■■□□□ 1.23
PRKN-210ENST00000612540 TOP2AP11388 1531 aaKnown RBP22.75■■□□□ 1.23
PRKN-210ENST00000612540 LAMC3Q9Y6N6 1575 aa22.59■■□□□ 1.21
PRKN-210ENST00000612540 KIF21AQ7Z4S6 1674 aa22.58■■□□□ 1.21
PRKN-210ENST00000612540 THOC2Q8NI27 1593 aaKnown RBP22.58■■□□□ 1.2
PRKN-210ENST00000612540 PDS5BQ9NTI5 1447 aa22.46■■□□□ 1.19
PRKN-210ENST00000612540 CCDC88BA6NC98 1476 aa22.45■■□□□ 1.18
PRKN-210ENST00000612540 CADPSQ9ULU8 1353 aa22.42■■□□□ 1.18
PRKN-210ENST00000612540 MRC2Q9UBG0 1479 aa22.27■■□□□ 1.16
PRKN-210ENST00000612540 WDR62O43379 1518 aa22.23■■□□□ 1.15
PRKN-210ENST00000612540 CFTRP13569 1480 aa22.17■■□□□ 1.14
PRKN-210ENST00000612540 CEP164Q9UPV0 1460 aa22.17■■□□□ 1.14
PRKN-210ENST00000612540 FANCD2Q9BXW9 1451 aa22.15■■□□□ 1.14
PRKN-210ENST00000612540 PRDM2Q13029 1718 aa22.13■■□□□ 1.13
PRKN-210ENST00000612540 URB2Q14146 1524 aaKnown RBP21.99■■□□□ 1.11
PRKN-210ENST00000612540 ABCC8Q09428 1581 aa21.87■■□□□ 1.09
PRKN-210ENST00000612540 TRIM41Q8WV44 630 aa21.85■■□□□ 1.09
PRKN-210ENST00000612540 WRNQ14191 1432 aaPredicted RBP eCLIP21.77■■□□□ 1.08
PRKN-210ENST00000612540 OSCARQ8IYS5 282 aa21.76■■□□□ 1.07
PRKN-210ENST00000612540 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
PRKN-210ENST00000612540 IFT140Q96RY7 1462 aa21.74■■□□□ 1.07
PRKN-210ENST00000612540 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
PRKN-210ENST00000612540 ZNF608Q9ULD9 1512 aaPredicted RBP21.71■■□□□ 1.07
PRKN-210ENST00000612540 SYNJ1O43426 1573 aa21.71■■□□□ 1.07
PRKN-210ENST00000612540 CUX1P39880 1505 aa21.7■■□□□ 1.07
PRKN-210ENST00000612540 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
PRKN-210ENST00000612540 TOP2BQ02880 1626 aa21.66■■□□□ 1.06
PRKN-210ENST00000612540 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
PRKN-210ENST00000612540 EIF4G3O43432 1585 aaKnown RBP21.61■■□□□ 1.05
PRKN-210ENST00000612540 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.05
PRKN-210ENST00000612540 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.05
PRKN-210ENST00000612540 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.05
PRKN-210ENST00000612540 CHD1O14646 1710 aa21.57■■□□□ 1.04
PRKN-210ENST00000612540 TARBP1Q13395 1621 aaKnown RBP21.56■■□□□ 1.04
PRKN-210ENST00000612540 FGD5Q6ZNL6 1462 aa21.56■■□□□ 1.04
PRKN-210ENST00000612540 POLA1P09884 1462 aaPredicted RBP21.53■■□□□ 1.04
PRKN-210ENST00000612540 AQRO60306 1485 aaKnown RBP eCLIP21.51■■□□□ 1.03
PRKN-210ENST00000612540 RAD54L2Q9Y4B4 1467 aa21.44■■□□□ 1.02
PRKN-210ENST00000612540 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
PRKN-210ENST00000612540 SOGA1O94964 1423 aa21.43■■□□□ 1.02
PRKN-210ENST00000612540 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
PRKN-210ENST00000612540 WDR97A6NE52 1622 aa21.36■■□□□ 1.01
PRKN-210ENST00000612540 ABCA10Q8WWZ4 1543 aa21.34■■□□□ 1.01
PRKN-210ENST00000612540 FBLN2P98095 1184 aa21.32■■□□□ 1
PRKN-210ENST00000612540 SNAPC4Q5SXM2 1469 aa21.29■■□□□ 1
PRKN-210ENST00000612540 FAM9AQ8IZU1 332 aaPredicted RBP21.27■■□□□ 1
PRKN-210ENST00000612540 KIF27Q86VH2 1401 aa21.27■■□□□ 1
PRKN-210ENST00000612540 RUSC2Q8N2Y8 1516 aa21.25■□□□□ 0.99
PRKN-210ENST00000612540 PBRM1Q86U86 1689 aa21.25■□□□□ 0.99
PRKN-210ENST00000612540 CYB5RLQ6IPT4 315 aa21.24■□□□□ 0.99
PRKN-210ENST00000612540 ABCA5Q8WWZ7 1642 aa21.23■□□□□ 0.99
PRKN-210ENST00000612540 GRIN2BQ13224 1484 aa21.23■□□□□ 0.99
PRKN-210ENST00000612540 ARAP1Q96P48 1450 aa21.23■□□□□ 0.99
PRKN-210ENST00000612540 MAGI1Q96QZ7 1491 aaPredicted RBP21.23■□□□□ 0.99
PRKN-210ENST00000612540 EEA1Q15075 1411 aa21.21■□□□□ 0.99
PRKN-210ENST00000612540 CLASP1Q7Z460 1538 aa21.2■□□□□ 0.98
PRKN-210ENST00000612540 GAPVD1Q14C86 1478 aa21.2■□□□□ 0.98
PRKN-210ENST00000612540 CHMP7Q8WUX9 453 aaPredicted RBP21.18■□□□□ 0.98
PRKN-210ENST00000612540 SYNJ2O15056 1496 aa21.17■□□□□ 0.98
PRKN-210ENST00000612540 CSRNP3Q8WYN3 585 aa21.1■□□□□ 0.97
PRKN-210ENST00000612540 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
PRKN-210ENST00000612540 CUL7Q14999 1698 aa21.06■□□□□ 0.96
PRKN-210ENST00000612540 IGF1RP08069 1367 aa21.06■□□□□ 0.96
PRKN-210ENST00000612540 TRHP20396 242 aaPredicted RBP21.03■□□□□ 0.96
PRKN-210ENST00000612540 ADAMTS12P58397 1594 aa21.02■□□□□ 0.95
PRKN-210ENST00000612540 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
PRKN-210ENST00000612540 CARMIL1Q5VZK9 1371 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms