RNA–Protein interactions for RNA: ENST00000612350.1

PTCHD3P1-201, Transcript of patched domain containing 3 pseudogene 1, humanhuman

BASIC

Gene PTCHD3P1, Length 537 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3P1-201ENST00000612350 AEBP2Q6ZN18 517 aaPredicted RBP20.05■□□□□ 0.8
PTCHD3P1-201ENST00000612350 CHIC1Q5VXU3 224 aa19.09■□□□□ 0.65
PTCHD3P1-201ENST00000612350 NISCHQ9Y2I1 1504 aa18.9■□□□□ 0.62
PTCHD3P1-201ENST00000612350 ABCC9O60706 1549 aa17.89■□□□□ 0.45
PTCHD3P1-201ENST00000612350 DNAJC5BQ9UF47 199 aa17.48■□□□□ 0.39
PTCHD3P1-201ENST00000612350 CCDC180Q9P1Z9 1646 aa17.2■□□□□ 0.34
PTCHD3P1-201ENST00000612350 SENP3Q9H4L4 574 aaPredicted RBP17.18■□□□□ 0.34
PTCHD3P1-201ENST00000612350 PHF23Q9BUL5 403 aaPredicted RBP16.93■□□□□ 0.3
PTCHD3P1-201ENST00000612350 RB1CC1Q8TDY2 1594 aa16.71■□□□□ 0.27
PTCHD3P1-201ENST00000612350 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
PTCHD3P1-201ENST00000612350 DNAJC5Q9H3Z4 198 aa16.52■□□□□ 0.24
PTCHD3P1-201ENST00000612350 NACADO15069 1562 aa16.45■□□□□ 0.22
PTCHD3P1-201ENST00000612350 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
PTCHD3P1-201ENST00000612350 BICRAQ9NZM4 1560 aa16.3■□□□□ 0.2
PTCHD3P1-201ENST00000612350 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
PTCHD3P1-201ENST00000612350 CECR2Q9BXF3 1484 aa16.18■□□□□ 0.18
PTCHD3P1-201ENST00000612350 CC2D2AQ9P2K1 1620 aa16.13■□□□□ 0.17
PTCHD3P1-201ENST00000612350 MYO15BQ96JP2 1530 aa16.02■□□□□ 0.15
PTCHD3P1-201ENST00000612350 FOXD1Q16676 465 aa15.96■□□□□ 0.15
PTCHD3P1-201ENST00000612350 SHROOM4Q9ULL8 1493 aa15.96■□□□□ 0.14
PTCHD3P1-201ENST00000612350 EIF4G1Q04637 1599 aaKnown RBP15.92■□□□□ 0.14
PTCHD3P1-201ENST00000612350 CUX2O14529 1486 aa15.68■□□□□ 0.1
PTCHD3P1-201ENST00000612350 SCRIBQ14160 1630 aa15.62■□□□□ 0.09
PTCHD3P1-201ENST00000612350 DCAF1Q9Y4B6 1507 aa15.56■□□□□ 0.08
PTCHD3P1-201ENST00000612350 ZCCHC6Q5VYS8 1495 aaKnown RBP15.5■□□□□ 0.07
PTCHD3P1-201ENST00000612350 ERCC6Q03468 1493 aa15.45■□□□□ 0.06
PTCHD3P1-201ENST00000612350 TRIM41Q8WV44 630 aa15.44■□□□□ 0.06
PTCHD3P1-201ENST00000612350 PLPPR3Q6T4P5 718 aa15.28■□□□□ 0.04
PTCHD3P1-201ENST00000612350 NCAPD3P42695 1498 aa15.23■□□□□ 0.03
PTCHD3P1-201ENST00000612350 NESP48681 1621 aa15.19■□□□□ 0.02
PTCHD3P1-201ENST00000612350 THOC2Q8NI27 1593 aaKnown RBP15.15■□□□□ 0.02
PTCHD3P1-201ENST00000612350 ATAD2BQ9ULI0 1458 aa15.08■□□□□ 0.01
PTCHD3P1-201ENST00000612350 MSH5O43196 834 aa15.01□□□□□ -0.01
PTCHD3P1-201ENST00000612350 HMGXB3Q12766 1538 aa15.01□□□□□ -0.01
PTCHD3P1-201ENST00000612350 SMARCA2P51531 1590 aa14.97□□□□□ -0.01
PTCHD3P1-201ENST00000612350 LAMC3Q9Y6N6 1575 aa14.94□□□□□ -0.02
PTCHD3P1-201ENST00000612350 KIF21AQ7Z4S6 1674 aa14.93□□□□□ -0.02
PTCHD3P1-201ENST00000612350 PIAS4Q8N2W9 510 aaPredicted RBP14.93□□□□□ -0.02
PTCHD3P1-201ENST00000612350 PPP6R1Q9UPN7 881 aa14.9□□□□□ -0.02
PTCHD3P1-201ENST00000612350 OSCARQ8IYS5 282 aa14.88□□□□□ -0.03
PTCHD3P1-201ENST00000612350 PDS5BQ9NTI5 1447 aa14.88□□□□□ -0.03
PTCHD3P1-201ENST00000612350 BAZ1AQ9NRL2 1556 aaPredicted RBP14.86□□□□□ -0.03
PTCHD3P1-201ENST00000612350 SMARCA4P51532 1647 aa14.85□□□□□ -0.03
PTCHD3P1-201ENST00000612350 ADRA2BP18089 450 aa14.85□□□□□ -0.03
PTCHD3P1-201ENST00000612350 BAZ1BQ9UIG0 1483 aaKnown RBP14.84□□□□□ -0.03
PTCHD3P1-201ENST00000612350 MRC2Q9UBG0 1479 aa14.8□□□□□ -0.04
PTCHD3P1-201ENST00000612350 WDR62O43379 1518 aa14.79□□□□□ -0.04
PTCHD3P1-201ENST00000612350 RIMBP3CA6NJZ7 1639 aa14.74□□□□□ -0.05
PTCHD3P1-201ENST00000612350 RIMBP3BA6NNM3 1639 aa14.74□□□□□ -0.05
PTCHD3P1-201ENST00000612350 RIMBP3Q9UFD9 1639 aa14.74□□□□□ -0.05
PTCHD3P1-201ENST00000612350 PEG3Q9GZU2 1588 aa14.74□□□□□ -0.05
PTCHD3P1-201ENST00000612350 CADPSQ9ULU8 1353 aa14.73□□□□□ -0.05
PTCHD3P1-201ENST00000612350 ARHGEF11O15085 1522 aa14.63□□□□□ -0.07
PTCHD3P1-201ENST00000612350 TRHP20396 242 aaPredicted RBP14.59□□□□□ -0.07
PTCHD3P1-201ENST00000612350 CEP164Q9UPV0 1460 aa14.58□□□□□ -0.08
PTCHD3P1-201ENST00000612350 CYB5RLQ6IPT4 315 aa14.58□□□□□ -0.08
PTCHD3P1-201ENST00000612350 POTEDQ86YR6 584 aa14.58□□□□□ -0.08
PTCHD3P1-201ENST00000612350 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
PTCHD3P1-201ENST00000612350 FANCD2Q9BXW9 1451 aa14.53□□□□□ -0.08
PTCHD3P1-201ENST00000612350 URB2Q14146 1524 aaKnown RBP14.47□□□□□ -0.09
PTCHD3P1-201ENST00000612350 ARAP1Q96P48 1450 aa14.45□□□□□ -0.1
PTCHD3P1-201ENST00000612350 ZNF608Q9ULD9 1512 aaPredicted RBP14.41□□□□□ -0.1
PTCHD3P1-201ENST00000612350 CFTRP13569 1480 aa14.41□□□□□ -0.1
PTCHD3P1-201ENST00000612350 IFT140Q96RY7 1462 aa14.34□□□□□ -0.11
PTCHD3P1-201ENST00000612350 WIZO95785 1651 aa14.33□□□□□ -0.11
PTCHD3P1-201ENST00000612350 RSF1Q96T23 1441 aaPredicted RBP14.32□□□□□ -0.12
PTCHD3P1-201ENST00000612350 CHD1O14646 1710 aa14.28□□□□□ -0.12
PTCHD3P1-201ENST00000612350 EIF4G3O43432 1585 aaKnown RBP14.25□□□□□ -0.13
PTCHD3P1-201ENST00000612350 ILDR1Q86SU0 546 aaPredicted RBP14.2□□□□□ -0.14
PTCHD3P1-201ENST00000612350 TOPBP1Q92547 1522 aa14.2□□□□□ -0.14
PTCHD3P1-201ENST00000612350 AQRO60306 1485 aaKnown RBP eCLIP14.19□□□□□ -0.14
PTCHD3P1-201ENST00000612350 FBLN2P98095 1184 aa14.19□□□□□ -0.14
PTCHD3P1-201ENST00000612350 PRDM2Q13029 1718 aa14.15□□□□□ -0.14
PTCHD3P1-201ENST00000612350 CLASP1Q7Z460 1538 aa14.13□□□□□ -0.15
PTCHD3P1-201ENST00000612350 TARBP1Q13395 1621 aaKnown RBP14.12□□□□□ -0.15
PTCHD3P1-201ENST00000612350 ABCC8Q09428 1581 aa14.09□□□□□ -0.15
PTCHD3P1-201ENST00000612350 TOP2AP11388 1531 aaKnown RBP14.09□□□□□ -0.15
PTCHD3P1-201ENST00000612350 DNMBPQ6XZF7 1577 aa14.05□□□□□ -0.16
PTCHD3P1-201ENST00000612350 GAPVD1Q14C86 1478 aa14.02□□□□□ -0.16
PTCHD3P1-201ENST00000612350 SYNJ1O43426 1573 aa14.01□□□□□ -0.17
PTCHD3P1-201ENST00000612350 TDRD9Q8NDG6 1382 aaKnown RBP14□□□□□ -0.17
PTCHD3P1-201ENST00000612350 POLA1P09884 1462 aaPredicted RBP13.99□□□□□ -0.17
PTCHD3P1-201ENST00000612350 SNAPC4Q5SXM2 1469 aa13.99□□□□□ -0.17
PTCHD3P1-201ENST00000612350 CHMP7Q8WUX9 453 aaPredicted RBP13.99□□□□□ -0.17
PTCHD3P1-201ENST00000612350 RAD54L2Q9Y4B4 1467 aa13.98□□□□□ -0.17
PTCHD3P1-201ENST00000612350 CCDC88BA6NC98 1476 aa13.97□□□□□ -0.17
PTCHD3P1-201ENST00000612350 KDM4FA0A1W2PPD8 638 aa13.96□□□□□ -0.17
PTCHD3P1-201ENST00000612350 SOGA1O94964 1423 aa13.93□□□□□ -0.18
PTCHD3P1-201ENST00000612350 MAGI1Q96QZ7 1491 aaPredicted RBP13.93□□□□□ -0.18
PTCHD3P1-201ENST00000612350 KIF13AQ9H1H9 1805 aa13.9□□□□□ -0.18
PTCHD3P1-201ENST00000612350 SYNJ2O15056 1496 aa13.9□□□□□ -0.18
PTCHD3P1-201ENST00000612350 WDR97A6NE52 1622 aa13.89□□□□□ -0.19
PTCHD3P1-201ENST00000612350 ERCC6L2Q5T890 1561 aa13.88□□□□□ -0.19
PTCHD3P1-201ENST00000612350 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
PTCHD3P1-201ENST00000612350 FGD5Q6ZNL6 1462 aa13.8□□□□□ -0.2
PTCHD3P1-201ENST00000612350 CEP170Q5SW79 1584 aa13.76□□□□□ -0.21
PTCHD3P1-201ENST00000612350 FAM69CQ0P6D2 419 aa13.76□□□□□ -0.21
PTCHD3P1-201ENST00000612350 PBRM1Q86U86 1689 aa13.74□□□□□ -0.21
PTCHD3P1-201ENST00000612350 ABCC10Q5T3U5 1492 aa13.74□□□□□ -0.21
PTCHD3P1-201ENST00000612350 SHROOM2Q13796 1616 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms