RNA–Protein interactions for RNA: ENST00000612292.1

MMP28-202, Transcript of matrix metallopeptidase 28, humanhuman

TSL 5

Gene MMP28, Length 567 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-202ENST00000612292 NISCHQ9Y2I1 1504 aa45.4■■■■■ 4.86
MMP28-202ENST00000612292 CCDC180Q9P1Z9 1646 aa40.45■■■■■ 4.07
MMP28-202ENST00000612292 ABCC9O60706 1549 aa39.88■■■■□ 3.97
MMP28-202ENST00000612292 RB1CC1Q8TDY2 1594 aa38.22■■■■□ 3.71
MMP28-202ENST00000612292 NACADO15069 1562 aa38.13■■■■□ 3.69
MMP28-202ENST00000612292 DCAF8L2P0C7V8 631 aa38.05■■■■□ 3.68
MMP28-202ENST00000612292 MYO15BQ96JP2 1530 aa37.82■■■■□ 3.65
MMP28-202ENST00000612292 ZCCHC6Q5VYS8 1495 aaKnown RBP37.71■■■■□ 3.63
MMP28-202ENST00000612292 DCAF1Q9Y4B6 1507 aa37.55■■■■□ 3.6
MMP28-202ENST00000612292 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
MMP28-202ENST00000612292 PABPN1Q86U42 306 aaKnown RBP eCLIP37.27■■■■□ 3.56
MMP28-202ENST00000612292 BICRAQ9NZM4 1560 aa37.14■■■■□ 3.54
MMP28-202ENST00000612292 DNAJC5BQ9UF47 199 aa37.03■■■■□ 3.52
MMP28-202ENST00000612292 SCRIBQ14160 1630 aa36.85■■■■□ 3.49
MMP28-202ENST00000612292 SHROOM4Q9ULL8 1493 aa36.63■■■■□ 3.45
MMP28-202ENST00000612292 EIF4G1Q04637 1599 aaKnown RBP36.14■■■■□ 3.38
MMP28-202ENST00000612292 CC2D2AQ9P2K1 1620 aa36.08■■■■□ 3.37
MMP28-202ENST00000612292 CECR2Q9BXF3 1484 aa35.86■■■■□ 3.33
MMP28-202ENST00000612292 SMARCA4P51532 1647 aa35.26■■■■□ 3.24
MMP28-202ENST00000612292 NCAPD3P42695 1498 aa35.23■■■■□ 3.23
MMP28-202ENST00000612292 ATAD2BQ9ULI0 1458 aa35.18■■■■□ 3.22
MMP28-202ENST00000612292 BAZ1AQ9NRL2 1556 aaPredicted RBP35.16■■■■□ 3.22
MMP28-202ENST00000612292 SMARCA2P51531 1590 aa35.07■■■■□ 3.2
MMP28-202ENST00000612292 MROH2BQ7Z745 1585 aa34.99■■■■□ 3.19
MMP28-202ENST00000612292 HMGXB3Q12766 1538 aa34.96■■■■□ 3.19
MMP28-202ENST00000612292 PEG3Q9GZU2 1588 aa34.95■■■■□ 3.18
MMP28-202ENST00000612292 BAZ1BQ9UIG0 1483 aaKnown RBP34.81■■■■□ 3.16
MMP28-202ENST00000612292 WIZO95785 1651 aa34.59■■■■□ 3.13
MMP28-202ENST00000612292 RSF1Q96T23 1441 aaPredicted RBP34.48■■■■□ 3.11
MMP28-202ENST00000612292 NESP48681 1621 aa34.45■■■■□ 3.11
MMP28-202ENST00000612292 ERCC6Q03468 1493 aa34.34■■■■□ 3.09
MMP28-202ENST00000612292 LAMC3Q9Y6N6 1575 aa34.29■■■■□ 3.08
MMP28-202ENST00000612292 CADPSQ9ULU8 1353 aa34.17■■■■□ 3.06
MMP28-202ENST00000612292 TOP2AP11388 1531 aaKnown RBP34.15■■■■□ 3.06
MMP28-202ENST00000612292 CUX2O14529 1486 aa34.14■■■■□ 3.06
MMP28-202ENST00000612292 PDS5BQ9NTI5 1447 aa34.07■■■■□ 3.04
MMP28-202ENST00000612292 KIF21AQ7Z4S6 1674 aa34.01■■■■□ 3.04
MMP28-202ENST00000612292 THOC2Q8NI27 1593 aaKnown RBP33.95■■■■□ 3.03
MMP28-202ENST00000612292 CFTRP13569 1480 aa33.89■■■■□ 3.02
MMP28-202ENST00000612292 CCDC88BA6NC98 1476 aa33.82■■■■□ 3
MMP28-202ENST00000612292 FANCD2Q9BXW9 1451 aa33.74■■■□□ 2.99
MMP28-202ENST00000612292 MRC2Q9UBG0 1479 aa33.72■■■□□ 2.99
MMP28-202ENST00000612292 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
MMP28-202ENST00000612292 WDR62O43379 1518 aa33.63■■■□□ 2.97
MMP28-202ENST00000612292 PRDM2Q13029 1718 aa33.57■■■□□ 2.96
MMP28-202ENST00000612292 DNAJC5Q9H3Z4 198 aa33.56■■■□□ 2.96
MMP28-202ENST00000612292 URB2Q14146 1524 aaKnown RBP33.44■■■□□ 2.94
MMP28-202ENST00000612292 SUPT5HO00267 1087 aaKnown RBP33.36■■■□□ 2.93
MMP28-202ENST00000612292 TOPBP1Q92547 1522 aa33.18■■■□□ 2.9
MMP28-202ENST00000612292 ABCC8Q09428 1581 aa33.16■■■□□ 2.9
MMP28-202ENST00000612292 DNMBPQ6XZF7 1577 aa33.09■■■□□ 2.89
MMP28-202ENST00000612292 IFT140Q96RY7 1462 aa33.02■■■□□ 2.88
MMP28-202ENST00000612292 ZNF608Q9ULD9 1512 aaPredicted RBP32.93■■■□□ 2.86
MMP28-202ENST00000612292 POLA1P09884 1462 aaPredicted RBP32.87■■■□□ 2.85
MMP28-202ENST00000612292 TARBP1Q13395 1621 aaKnown RBP32.86■■■□□ 2.85
MMP28-202ENST00000612292 CUX1P39880 1505 aa32.82■■■□□ 2.84
MMP28-202ENST00000612292 SOGA1O94964 1423 aa32.77■■■□□ 2.84
MMP28-202ENST00000612292 RAD54L2Q9Y4B4 1467 aa32.75■■■□□ 2.83
MMP28-202ENST00000612292 OSCARQ8IYS5 282 aa32.74■■■□□ 2.83
MMP28-202ENST00000612292 FGD5Q6ZNL6 1462 aa32.74■■■□□ 2.83
MMP28-202ENST00000612292 EIF4G3O43432 1585 aaKnown RBP32.73■■■□□ 2.83
MMP28-202ENST00000612292 AQRO60306 1485 aaKnown RBP eCLIP32.73■■■□□ 2.83
MMP28-202ENST00000612292 TDRD9Q8NDG6 1382 aaKnown RBP32.61■■■□□ 2.81
MMP28-202ENST00000612292 WDR97A6NE52 1622 aa32.53■■■□□ 2.8
MMP28-202ENST00000612292 WRNQ14191 1432 aaPredicted RBP eCLIP32.48■■■□□ 2.79
MMP28-202ENST00000612292 TOP2BQ02880 1626 aa32.44■■■□□ 2.78
MMP28-202ENST00000612292 BIVM-ERCC5R4GMW8 1640 aa32.44■■■□□ 2.78
MMP28-202ENST00000612292 ABCA10Q8WWZ4 1543 aa32.42■■■□□ 2.78
MMP28-202ENST00000612292 SYNJ1O43426 1573 aa32.41■■■□□ 2.78
MMP28-202ENST00000612292 CHD1O14646 1710 aa32.41■■■□□ 2.78
MMP28-202ENST00000612292 GRIN2BQ13224 1484 aa32.37■■■□□ 2.77
MMP28-202ENST00000612292 FBLN2P98095 1184 aa32.36■■■□□ 2.77
MMP28-202ENST00000612292 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
MMP28-202ENST00000612292 GAPVD1Q14C86 1478 aa32.35■■■□□ 2.77
MMP28-202ENST00000612292 MAGI1Q96QZ7 1491 aaPredicted RBP32.31■■■□□ 2.76
MMP28-202ENST00000612292 ABCA5Q8WWZ7 1642 aa32.3■■■□□ 2.76
MMP28-202ENST00000612292 PBRM1Q86U86 1689 aa32.27■■■□□ 2.76
MMP28-202ENST00000612292 CHMP7Q8WUX9 453 aaPredicted RBP32.24■■■□□ 2.75
MMP28-202ENST00000612292 TRIM41Q8WV44 630 aa32.22■■■□□ 2.75
MMP28-202ENST00000612292 SYNJ2O15056 1496 aa32.2■■■□□ 2.75
MMP28-202ENST00000612292 RIMBP3CA6NJZ7 1639 aa32.19■■■□□ 2.74
MMP28-202ENST00000612292 RIMBP3BA6NNM3 1639 aa32.19■■■□□ 2.74
MMP28-202ENST00000612292 RIMBP3Q9UFD9 1639 aa32.19■■■□□ 2.74
MMP28-202ENST00000612292 ARHGEF11O15085 1522 aa32.14■■■□□ 2.74
MMP28-202ENST00000612292 CLASP1Q7Z460 1538 aa32.06■■■□□ 2.72
MMP28-202ENST00000612292 ERICH3Q5RHP9 1530 aa32.02■■■□□ 2.72
MMP28-202ENST00000612292 ADAMTS12P58397 1594 aa31.98■■■□□ 2.71
MMP28-202ENST00000612292 FHAD1B1AJZ9 1412 aa31.96■■■□□ 2.71
MMP28-202ENST00000612292 GRIN2AQ12879 1464 aa31.96■■■□□ 2.71
MMP28-202ENST00000612292 CYB5RLQ6IPT4 315 aa31.92■■■□□ 2.7
MMP28-202ENST00000612292 ARAP1Q96P48 1450 aa31.87■■■□□ 2.69
MMP28-202ENST00000612292 NUP160Q12769 1436 aa31.85■■■□□ 2.69
MMP28-202ENST00000612292 CEP170Q5SW79 1584 aa31.82■■■□□ 2.68
MMP28-202ENST00000612292 KIF27Q86VH2 1401 aa31.82■■■□□ 2.68
MMP28-202ENST00000612292 IGF1RP08069 1367 aa31.81■■■□□ 2.68
MMP28-202ENST00000612292 SHROOM2Q13796 1616 aa31.64■■■□□ 2.66
MMP28-202ENST00000612292 CUL7Q14999 1698 aa31.64■■■□□ 2.65
MMP28-202ENST00000612292 ERCC6L2Q5T890 1561 aa31.62■■■□□ 2.65
MMP28-202ENST00000612292 JPH4Q96JJ6 628 aa31.59■■■□□ 2.65
MMP28-202ENST00000612292 CARMIL1Q5VZK9 1371 aa31.57■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms