RNA–Protein interactions for RNA: ENST00000611899.4

PDE1B-209, Transcript of phosphodiesterase 1B, humanhuman

TSL 4

Gene PDE1B, Length 628 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE1B-209ENST00000611899 NISCHQ9Y2I1 1504 aa52.9■■■■■ 6.06
PDE1B-209ENST00000611899 ABCC9O60706 1549 aa47.84■■■■■ 5.25
PDE1B-209ENST00000611899 CCDC180Q9P1Z9 1646 aa47.49■■■■■ 5.19
PDE1B-209ENST00000611899 RB1CC1Q8TDY2 1594 aa45.39■■■■■ 4.86
PDE1B-209ENST00000611899 DNAJC5BQ9UF47 199 aa45.07■■■■■ 4.81
PDE1B-209ENST00000611899 NACADO15069 1562 aa45.02■■■■■ 4.8
PDE1B-209ENST00000611899 DCAF8L2P0C7V8 631 aa44.88■■■■■ 4.78
PDE1B-209ENST00000611899 PABPN1Q86U42 306 aaKnown RBP eCLIP44.54■■■■■ 4.72
PDE1B-209ENST00000611899 MYO15BQ96JP2 1530 aa44.32■■■■■ 4.69
PDE1B-209ENST00000611899 UNC13AQ9UPW8 1703 aa44.19■■■■■ 4.67
PDE1B-209ENST00000611899 BICRAQ9NZM4 1560 aa44.03■■■■■ 4.64
PDE1B-209ENST00000611899 ZCCHC6Q5VYS8 1495 aaKnown RBP43.78■■■■■ 4.6
PDE1B-209ENST00000611899 DCAF1Q9Y4B6 1507 aa43.66■■■■■ 4.58
PDE1B-209ENST00000611899 SHROOM4Q9ULL8 1493 aa43.47■■■■■ 4.55
PDE1B-209ENST00000611899 SCRIBQ14160 1630 aa43.33■■■■■ 4.53
PDE1B-209ENST00000611899 CC2D2AQ9P2K1 1620 aa43.14■■■■■ 4.5
PDE1B-209ENST00000611899 CECR2Q9BXF3 1484 aa43.12■■■■■ 4.49
PDE1B-209ENST00000611899 EIF4G1Q04637 1599 aaKnown RBP43.01■■■■■ 4.48
PDE1B-209ENST00000611899 NCAPD3P42695 1498 aa41.6■■■■■ 4.25
PDE1B-209ENST00000611899 DNAJC5Q9H3Z4 198 aa41.58■■■■■ 4.25
PDE1B-209ENST00000611899 ATAD2BQ9ULI0 1458 aa41.43■■■■■ 4.22
PDE1B-209ENST00000611899 ERCC6Q03468 1493 aa41.35■■■■■ 4.21
PDE1B-209ENST00000611899 CUX2O14529 1486 aa41.32■■■■■ 4.2
PDE1B-209ENST00000611899 SMARCA2P51531 1590 aa41.29■■■■■ 4.2
PDE1B-209ENST00000611899 SMARCA4P51532 1647 aa41.29■■■■■ 4.2
PDE1B-209ENST00000611899 HMGXB3Q12766 1538 aa41.23■■■■■ 4.19
PDE1B-209ENST00000611899 BAZ1AQ9NRL2 1556 aaPredicted RBP41.08■■■■■ 4.17
PDE1B-209ENST00000611899 BAZ1BQ9UIG0 1483 aaKnown RBP41.04■■■■■ 4.16
PDE1B-209ENST00000611899 NESP48681 1621 aa41■■■■■ 4.15
PDE1B-209ENST00000611899 PEG3Q9GZU2 1588 aa40.87■■■■■ 4.13
PDE1B-209ENST00000611899 MROH2BQ7Z745 1585 aa40.76■■■■■ 4.12
PDE1B-209ENST00000611899 LAMC3Q9Y6N6 1575 aa40.66■■■■■ 4.1
PDE1B-209ENST00000611899 THOC2Q8NI27 1593 aaKnown RBP40.58■■■■■ 4.09
PDE1B-209ENST00000611899 PDS5BQ9NTI5 1447 aa40.5■■■■■ 4.07
PDE1B-209ENST00000611899 KIF21AQ7Z4S6 1674 aa40.37■■■■■ 4.05
PDE1B-209ENST00000611899 CADPSQ9ULU8 1353 aa40.35■■■■■ 4.05
PDE1B-209ENST00000611899 WIZO95785 1651 aa40.21■■■■■ 4.03
PDE1B-209ENST00000611899 MRC2Q9UBG0 1479 aa40.14■■■■■ 4.02
PDE1B-209ENST00000611899 WDR62O43379 1518 aa40.02■■■■■ 4
PDE1B-209ENST00000611899 CEP164Q9UPV0 1460 aa39.94■■■■□ 3.98
PDE1B-209ENST00000611899 FANCD2Q9BXW9 1451 aa39.88■■■■□ 3.97
PDE1B-209ENST00000611899 RSF1Q96T23 1441 aaPredicted RBP39.85■■■■□ 3.97
PDE1B-209ENST00000611899 CFTRP13569 1480 aa39.81■■■■□ 3.96
PDE1B-209ENST00000611899 TOP2AP11388 1531 aaKnown RBP39.73■■■■□ 3.95
PDE1B-209ENST00000611899 TRIM41Q8WV44 630 aa39.72■■■■□ 3.95
PDE1B-209ENST00000611899 URB2Q14146 1524 aaKnown RBP39.54■■■■□ 3.92
PDE1B-209ENST00000611899 OSCARQ8IYS5 282 aa39.45■■■■□ 3.91
PDE1B-209ENST00000611899 CCDC88BA6NC98 1476 aa39.3■■■■□ 3.88
PDE1B-209ENST00000611899 PRDM2Q13029 1718 aa39.22■■■■□ 3.87
PDE1B-209ENST00000611899 IFT140Q96RY7 1462 aa39.16■■■■□ 3.86
PDE1B-209ENST00000611899 ZNF608Q9ULD9 1512 aaPredicted RBP39.09■■■■□ 3.85
PDE1B-209ENST00000611899 TOPBP1Q92547 1522 aa39.08■■■■□ 3.85
PDE1B-209ENST00000611899 ABCC8Q09428 1581 aa38.99■■■■□ 3.83
PDE1B-209ENST00000611899 DNMBPQ6XZF7 1577 aa38.9■■■■□ 3.82
PDE1B-209ENST00000611899 RIMBP3CA6NJZ7 1639 aa38.85■■■■□ 3.81
PDE1B-209ENST00000611899 RIMBP3BA6NNM3 1639 aa38.85■■■■□ 3.81
PDE1B-209ENST00000611899 RIMBP3Q9UFD9 1639 aa38.85■■■■□ 3.81
PDE1B-209ENST00000611899 EIF4G3O43432 1585 aaKnown RBP38.83■■■■□ 3.81
PDE1B-209ENST00000611899 ARHGEF11O15085 1522 aa38.75■■■■□ 3.79
PDE1B-209ENST00000611899 AQRO60306 1485 aaKnown RBP eCLIP38.74■■■■□ 3.79
PDE1B-209ENST00000611899 TARBP1Q13395 1621 aaKnown RBP38.7■■■■□ 3.79
PDE1B-209ENST00000611899 POLA1P09884 1462 aaPredicted RBP38.66■■■■□ 3.78
PDE1B-209ENST00000611899 FBLN2P98095 1184 aa38.6■■■■□ 3.77
PDE1B-209ENST00000611899 CYB5RLQ6IPT4 315 aa38.55■■■■□ 3.76
PDE1B-209ENST00000611899 RAD54L2Q9Y4B4 1467 aa38.54■■■■□ 3.76
PDE1B-209ENST00000611899 SOGA1O94964 1423 aa38.53■■■■□ 3.76
PDE1B-209ENST00000611899 CHD1O14646 1710 aa38.52■■■■□ 3.76
PDE1B-209ENST00000611899 TDRD9Q8NDG6 1382 aaKnown RBP38.49■■■■□ 3.75
PDE1B-209ENST00000611899 FGD5Q6ZNL6 1462 aa38.4■■■■□ 3.74
PDE1B-209ENST00000611899 ARAP1Q96P48 1450 aa38.36■■■■□ 3.73
PDE1B-209ENST00000611899 SNAPC4Q5SXM2 1469 aa38.34■■■■□ 3.73
PDE1B-209ENST00000611899 CUX1P39880 1505 aa38.3■■■■□ 3.72
PDE1B-209ENST00000611899 WDR97A6NE52 1622 aa38.3■■■■□ 3.72
PDE1B-209ENST00000611899 CHMP7Q8WUX9 453 aaPredicted RBP38.27■■■■□ 3.72
PDE1B-209ENST00000611899 TRHP20396 242 aaPredicted RBP38.23■■■■□ 3.71
PDE1B-209ENST00000611899 MAGI1Q96QZ7 1491 aaPredicted RBP38.22■■■■□ 3.71
PDE1B-209ENST00000611899 GRIN2BQ13224 1484 aa38.21■■■■□ 3.71
PDE1B-209ENST00000611899 CLASP1Q7Z460 1538 aa38.15■■■■□ 3.7
PDE1B-209ENST00000611899 SYNJ1O43426 1573 aa38.13■■■■□ 3.69
PDE1B-209ENST00000611899 SYNJ2O15056 1496 aa38.1■■■■□ 3.69
PDE1B-209ENST00000611899 GAPVD1Q14C86 1478 aa38.03■■■■□ 3.68
PDE1B-209ENST00000611899 SUPT5HO00267 1087 aaKnown RBP38■■■■□ 3.67
PDE1B-209ENST00000611899 ABCA10Q8WWZ4 1543 aa37.95■■■■□ 3.67
PDE1B-209ENST00000611899 PBRM1Q86U86 1689 aa37.92■■■■□ 3.66
PDE1B-209ENST00000611899 ABCA5Q8WWZ7 1642 aa37.86■■■■□ 3.65
PDE1B-209ENST00000611899 WRNQ14191 1432 aaPredicted RBP eCLIP37.79■■■■□ 3.64
PDE1B-209ENST00000611899 GRIN2AQ12879 1464 aa37.7■■■■□ 3.63
PDE1B-209ENST00000611899 ADAMTS12P58397 1594 aa37.61■■■■□ 3.61
PDE1B-209ENST00000611899 TOP2BQ02880 1626 aa37.61■■■■□ 3.61
PDE1B-209ENST00000611899 NUP160Q12769 1436 aa37.58■■■■□ 3.61
PDE1B-209ENST00000611899 BIVM-ERCC5R4GMW8 1640 aa37.58■■■■□ 3.61
PDE1B-209ENST00000611899 FHAD1B1AJZ9 1412 aa37.55■■■■□ 3.6
PDE1B-209ENST00000611899 CEP170Q5SW79 1584 aa37.54■■■■□ 3.6
PDE1B-209ENST00000611899 ERCC6L2Q5T890 1561 aa37.54■■■■□ 3.6
PDE1B-209ENST00000611899 ERICH3Q5RHP9 1530 aa37.46■■■■□ 3.59
PDE1B-209ENST00000611899 SHROOM2Q13796 1616 aa37.37■■■■□ 3.57
PDE1B-209ENST00000611899 AEBP2Q6ZN18 517 aaPredicted RBP37.3■■■■□ 3.56
PDE1B-209ENST00000611899 PRG4Q92954 1404 aaPredicted RBP37.27■■■■□ 3.56
PDE1B-209ENST00000611899 JPH4Q96JJ6 628 aa37.24■■■■□ 3.55
PDE1B-209ENST00000611899 RUSC2Q8N2Y8 1516 aa37.08■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms