RNA–Protein interactions for RNA: ENST00000611107.1

SNCA-212, Transcript of synuclein alpha, humanhuman

TSL 5 BASIC

Gene SNCA, Length 297 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-212ENST00000611107 NISCHQ9Y2I1 1504 aa21.49■■□□□ 1.03
SNCA-212ENST00000611107 CCDC180Q9P1Z9 1646 aa19.11■□□□□ 0.65
SNCA-212ENST00000611107 ABCC9O60706 1549 aa18.95■□□□□ 0.62
SNCA-212ENST00000611107 RB1CC1Q8TDY2 1594 aa18.04■□□□□ 0.48
SNCA-212ENST00000611107 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
SNCA-212ENST00000611107 NACADO15069 1562 aa17.98■□□□□ 0.47
SNCA-212ENST00000611107 ZCCHC6Q5VYS8 1495 aaKnown RBP17.87■□□□□ 0.45
SNCA-212ENST00000611107 UNC13AQ9UPW8 1703 aa17.83■□□□□ 0.44
SNCA-212ENST00000611107 MYO15BQ96JP2 1530 aa17.79■□□□□ 0.44
SNCA-212ENST00000611107 PABPN1Q86U42 306 aaKnown RBP eCLIP17.7■□□□□ 0.42
SNCA-212ENST00000611107 DCAF1Q9Y4B6 1507 aa17.7■□□□□ 0.42
SNCA-212ENST00000611107 BICRAQ9NZM4 1560 aa17.66■□□□□ 0.42
SNCA-212ENST00000611107 DNAJC5BQ9UF47 199 aa17.64■□□□□ 0.41
SNCA-212ENST00000611107 SCRIBQ14160 1630 aa17.53■□□□□ 0.4
SNCA-212ENST00000611107 SHROOM4Q9ULL8 1493 aa17.21■□□□□ 0.35
SNCA-212ENST00000611107 EIF4G1Q04637 1599 aaKnown RBP17.12■□□□□ 0.33
SNCA-212ENST00000611107 CC2D2AQ9P2K1 1620 aa17.12■□□□□ 0.33
SNCA-212ENST00000611107 CECR2Q9BXF3 1484 aa16.98■□□□□ 0.31
SNCA-212ENST00000611107 SMARCA4P51532 1647 aa16.72■□□□□ 0.27
SNCA-212ENST00000611107 ATAD2BQ9ULI0 1458 aa16.66■□□□□ 0.26
SNCA-212ENST00000611107 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
SNCA-212ENST00000611107 NCAPD3P42695 1498 aa16.62■□□□□ 0.25
SNCA-212ENST00000611107 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
SNCA-212ENST00000611107 SMARCA2P51531 1590 aa16.54■□□□□ 0.24
SNCA-212ENST00000611107 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
SNCA-212ENST00000611107 HMGXB3Q12766 1538 aa16.51■□□□□ 0.23
SNCA-212ENST00000611107 WIZO95785 1651 aa16.46■□□□□ 0.23
SNCA-212ENST00000611107 BAZ1BQ9UIG0 1483 aaKnown RBP16.46■□□□□ 0.23
SNCA-212ENST00000611107 NESP48681 1621 aa16.41■□□□□ 0.22
SNCA-212ENST00000611107 RSF1Q96T23 1441 aaPredicted RBP16.35■□□□□ 0.21
SNCA-212ENST00000611107 ERCC6Q03468 1493 aa16.22■□□□□ 0.19
SNCA-212ENST00000611107 KIF21AQ7Z4S6 1674 aa16.18■□□□□ 0.18
SNCA-212ENST00000611107 LAMC3Q9Y6N6 1575 aa16.18■□□□□ 0.18
SNCA-212ENST00000611107 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
SNCA-212ENST00000611107 THOC2Q8NI27 1593 aaKnown RBP16.14■□□□□ 0.17
SNCA-212ENST00000611107 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
SNCA-212ENST00000611107 CUX2O14529 1486 aa16.1■□□□□ 0.17
SNCA-212ENST00000611107 CCDC88BA6NC98 1476 aa16.03■□□□□ 0.16
SNCA-212ENST00000611107 PDS5BQ9NTI5 1447 aa16.03■□□□□ 0.16
SNCA-212ENST00000611107 CFTRP13569 1480 aa16.03■□□□□ 0.16
SNCA-212ENST00000611107 FANCD2Q9BXW9 1451 aa15.97■□□□□ 0.15
SNCA-212ENST00000611107 MRC2Q9UBG0 1479 aa15.95■□□□□ 0.14
SNCA-212ENST00000611107 CEP164Q9UPV0 1460 aa15.92■□□□□ 0.14
SNCA-212ENST00000611107 WDR62O43379 1518 aa15.92■□□□□ 0.14
SNCA-212ENST00000611107 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
SNCA-212ENST00000611107 URB2Q14146 1524 aaKnown RBP15.89■□□□□ 0.13
SNCA-212ENST00000611107 DNAJC5Q9H3Z4 198 aa15.84■□□□□ 0.13
SNCA-212ENST00000611107 SUPT5HO00267 1087 aaKnown RBP15.82■□□□□ 0.12
SNCA-212ENST00000611107 TOPBP1Q92547 1522 aa15.73■□□□□ 0.11
SNCA-212ENST00000611107 ZNF608Q9ULD9 1512 aaPredicted RBP15.67■□□□□ 0.1
SNCA-212ENST00000611107 DNMBPQ6XZF7 1577 aa15.66■□□□□ 0.1
SNCA-212ENST00000611107 CUX1P39880 1505 aa15.6■□□□□ 0.09
SNCA-212ENST00000611107 TARBP1Q13395 1621 aaKnown RBP15.6■□□□□ 0.09
SNCA-212ENST00000611107 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
SNCA-212ENST00000611107 IFT140Q96RY7 1462 aa15.59■□□□□ 0.09
SNCA-212ENST00000611107 RAD54L2Q9Y4B4 1467 aa15.57■□□□□ 0.08
SNCA-212ENST00000611107 ABCC8Q09428 1581 aa15.56■□□□□ 0.08
SNCA-212ENST00000611107 EIF4G3O43432 1585 aaKnown RBP15.53■□□□□ 0.08
SNCA-212ENST00000611107 AQRO60306 1485 aaKnown RBP eCLIP15.52■□□□□ 0.08
SNCA-212ENST00000611107 FGD5Q6ZNL6 1462 aa15.52■□□□□ 0.07
SNCA-212ENST00000611107 SOGA1O94964 1423 aa15.47■□□□□ 0.07
SNCA-212ENST00000611107 TDRD9Q8NDG6 1382 aaKnown RBP15.47■□□□□ 0.07
SNCA-212ENST00000611107 WDR97A6NE52 1622 aa15.44■□□□□ 0.06
SNCA-212ENST00000611107 SYNJ1O43426 1573 aa15.43■□□□□ 0.06
SNCA-212ENST00000611107 CHD1O14646 1710 aa15.42■□□□□ 0.06
SNCA-212ENST00000611107 OSCARQ8IYS5 282 aa15.4■□□□□ 0.06
SNCA-212ENST00000611107 BIVM-ERCC5R4GMW8 1640 aa15.38■□□□□ 0.05
SNCA-212ENST00000611107 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
SNCA-212ENST00000611107 WRNQ14191 1432 aaPredicted RBP eCLIP15.35■□□□□ 0.05
SNCA-212ENST00000611107 SNAPC4Q5SXM2 1469 aa15.34■□□□□ 0.05
SNCA-212ENST00000611107 ABCA10Q8WWZ4 1543 aa15.33■□□□□ 0.04
SNCA-212ENST00000611107 ABCA5Q8WWZ7 1642 aa15.32■□□□□ 0.04
SNCA-212ENST00000611107 PBRM1Q86U86 1689 aa15.32■□□□□ 0.04
SNCA-212ENST00000611107 RIMBP3CA6NJZ7 1639 aa15.29■□□□□ 0.04
SNCA-212ENST00000611107 RIMBP3BA6NNM3 1639 aa15.29■□□□□ 0.04
SNCA-212ENST00000611107 RIMBP3Q9UFD9 1639 aa15.29■□□□□ 0.04
SNCA-212ENST00000611107 GAPVD1Q14C86 1478 aa15.29■□□□□ 0.04
SNCA-212ENST00000611107 FBLN2P98095 1184 aa15.29■□□□□ 0.04
SNCA-212ENST00000611107 GRIN2BQ13224 1484 aa15.28■□□□□ 0.04
SNCA-212ENST00000611107 TRIM41Q8WV44 630 aa15.27■□□□□ 0.04
SNCA-212ENST00000611107 MAGI1Q96QZ7 1491 aaPredicted RBP15.24■□□□□ 0.03
SNCA-212ENST00000611107 ARHGEF11O15085 1522 aa15.23■□□□□ 0.03
SNCA-212ENST00000611107 SYNJ2O15056 1496 aa15.21■□□□□ 0.03
SNCA-212ENST00000611107 CLASP1Q7Z460 1538 aa15.21■□□□□ 0.03
SNCA-212ENST00000611107 CHMP7Q8WUX9 453 aaPredicted RBP15.18■□□□□ 0.02
SNCA-212ENST00000611107 ADAMTS12P58397 1594 aa15.18■□□□□ 0.02
SNCA-212ENST00000611107 ARAP1Q96P48 1450 aa15.14■□□□□ 0.01
SNCA-212ENST00000611107 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
SNCA-212ENST00000611107 GRIN2AQ12879 1464 aa15.12■□□□□ 0.01
SNCA-212ENST00000611107 ERICH3Q5RHP9 1530 aa15.11■□□□□ 0.01
SNCA-212ENST00000611107 ERCC6L2Q5T890 1561 aa15.1■□□□□ 0.01
SNCA-212ENST00000611107 CYB5RLQ6IPT4 315 aa15.09■□□□□ 0.01
SNCA-212ENST00000611107 FHAD1B1AJZ9 1412 aa15.08■□□□□ 0
SNCA-212ENST00000611107 NUP160Q12769 1436 aa15.07■□□□□ 0
SNCA-212ENST00000611107 IGF1RP08069 1367 aa15.05■□□□□ -0
SNCA-212ENST00000611107 RUSC2Q8N2Y8 1516 aa15.03■□□□□ -0
SNCA-212ENST00000611107 SHROOM2Q13796 1616 aa14.99□□□□□ -0.01
SNCA-212ENST00000611107 KIF27Q86VH2 1401 aa14.99□□□□□ -0.01
SNCA-212ENST00000611107 CUL7Q14999 1698 aa14.94□□□□□ -0.02
SNCA-212ENST00000611107 CARMIL1Q5VZK9 1371 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms