RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 NISCHQ9Y2I1 1504 aa28.55■■■□□ 2.16
LINC00539-204ENST00000608957 CCDC180Q9P1Z9 1646 aa25.52■■□□□ 1.68
LINC00539-204ENST00000608957 ABCC9O60706 1549 aa25.16■■□□□ 1.62
LINC00539-204ENST00000608957 RB1CC1Q8TDY2 1594 aa24.08■■□□□ 1.44
LINC00539-204ENST00000608957 NACADO15069 1562 aa23.99■■□□□ 1.43
LINC00539-204ENST00000608957 DCAF8L2P0C7V8 631 aa23.83■■□□□ 1.41
LINC00539-204ENST00000608957 MYO15BQ96JP2 1530 aa23.76■■□□□ 1.39
LINC00539-204ENST00000608957 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
LINC00539-204ENST00000608957 UNC13AQ9UPW8 1703 aa23.72■■□□□ 1.39
LINC00539-204ENST00000608957 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
LINC00539-204ENST00000608957 BICRAQ9NZM4 1560 aa23.46■■□□□ 1.35
LINC00539-204ENST00000608957 PABPN1Q86U42 306 aaKnown RBP eCLIP23.44■■□□□ 1.34
LINC00539-204ENST00000608957 DNAJC5BQ9UF47 199 aa23.34■■□□□ 1.33
LINC00539-204ENST00000608957 SCRIBQ14160 1630 aa23.27■■□□□ 1.32
LINC00539-204ENST00000608957 SHROOM4Q9ULL8 1493 aa23.05■■□□□ 1.28
LINC00539-204ENST00000608957 EIF4G1Q04637 1599 aaKnown RBP22.8■■□□□ 1.24
LINC00539-204ENST00000608957 CC2D2AQ9P2K1 1620 aa22.78■■□□□ 1.24
LINC00539-204ENST00000608957 CECR2Q9BXF3 1484 aa22.6■■□□□ 1.21
LINC00539-204ENST00000608957 SMARCA4P51532 1647 aa22.24■■□□□ 1.15
LINC00539-204ENST00000608957 NCAPD3P42695 1498 aa22.13■■□□□ 1.13
LINC00539-204ENST00000608957 ATAD2BQ9ULI0 1458 aa22.13■■□□□ 1.13
LINC00539-204ENST00000608957 BAZ1AQ9NRL2 1556 aaPredicted RBP22.11■■□□□ 1.13
LINC00539-204ENST00000608957 SMARCA2P51531 1590 aa22.07■■□□□ 1.12
LINC00539-204ENST00000608957 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
LINC00539-204ENST00000608957 HMGXB3Q12766 1538 aa22.03■■□□□ 1.12
LINC00539-204ENST00000608957 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
LINC00539-204ENST00000608957 BAZ1BQ9UIG0 1483 aaKnown RBP21.9■■□□□ 1.1
LINC00539-204ENST00000608957 WIZO95785 1651 aa21.82■■□□□ 1.08
LINC00539-204ENST00000608957 NESP48681 1621 aa21.75■■□□□ 1.07
LINC00539-204ENST00000608957 RSF1Q96T23 1441 aaPredicted RBP21.66■■□□□ 1.06
LINC00539-204ENST00000608957 ERCC6Q03468 1493 aa21.63■■□□□ 1.05
LINC00539-204ENST00000608957 LAMC3Q9Y6N6 1575 aa21.6■■□□□ 1.05
LINC00539-204ENST00000608957 KIF21AQ7Z4S6 1674 aa21.53■■□□□ 1.04
LINC00539-204ENST00000608957 CUX2O14529 1486 aa21.52■■□□□ 1.03
LINC00539-204ENST00000608957 TOP2AP11388 1531 aaKnown RBP21.51■■□□□ 1.03
LINC00539-204ENST00000608957 THOC2Q8NI27 1593 aaKnown RBP21.49■■□□□ 1.03
LINC00539-204ENST00000608957 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
LINC00539-204ENST00000608957 PDS5BQ9NTI5 1447 aa21.39■■□□□ 1.02
LINC00539-204ENST00000608957 CFTRP13569 1480 aa21.31■■□□□ 1
LINC00539-204ENST00000608957 PRDM2Q13029 1718 aa21.26■□□□□ 0.99
LINC00539-204ENST00000608957 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
LINC00539-204ENST00000608957 MRC2Q9UBG0 1479 aa21.25■□□□□ 0.99
LINC00539-204ENST00000608957 FANCD2Q9BXW9 1451 aa21.23■□□□□ 0.99
LINC00539-204ENST00000608957 CEP164Q9UPV0 1460 aa21.22■□□□□ 0.99
LINC00539-204ENST00000608957 WDR62O43379 1518 aa21.22■□□□□ 0.99
LINC00539-204ENST00000608957 DNAJC5Q9H3Z4 198 aa21.11■□□□□ 0.97
LINC00539-204ENST00000608957 URB2Q14146 1524 aaKnown RBP21.09■□□□□ 0.97
LINC00539-204ENST00000608957 TOPBP1Q92547 1522 aa20.89■□□□□ 0.94
LINC00539-204ENST00000608957 SUPT5HO00267 1087 aaKnown RBP20.87■□□□□ 0.93
LINC00539-204ENST00000608957 DNMBPQ6XZF7 1577 aa20.85■□□□□ 0.93
LINC00539-204ENST00000608957 ABCC8Q09428 1581 aa20.8■□□□□ 0.92
LINC00539-204ENST00000608957 IFT140Q96RY7 1462 aa20.77■□□□□ 0.92
LINC00539-204ENST00000608957 ZNF608Q9ULD9 1512 aaPredicted RBP20.77■□□□□ 0.92
LINC00539-204ENST00000608957 TARBP1Q13395 1621 aaKnown RBP20.73■□□□□ 0.91
LINC00539-204ENST00000608957 POLA1P09884 1462 aaPredicted RBP20.7■□□□□ 0.9
LINC00539-204ENST00000608957 EIF4G3O43432 1585 aaKnown RBP20.69■□□□□ 0.9
LINC00539-204ENST00000608957 CUX1P39880 1505 aa20.68■□□□□ 0.9
LINC00539-204ENST00000608957 RAD54L2Q9Y4B4 1467 aa20.62■□□□□ 0.89
LINC00539-204ENST00000608957 FGD5Q6ZNL6 1462 aa20.62■□□□□ 0.89
LINC00539-204ENST00000608957 AQRO60306 1485 aaKnown RBP eCLIP20.59■□□□□ 0.89
LINC00539-204ENST00000608957 SOGA1O94964 1423 aa20.56■□□□□ 0.88
LINC00539-204ENST00000608957 WDR97A6NE52 1622 aa20.56■□□□□ 0.88
LINC00539-204ENST00000608957 CHD1O14646 1710 aa20.53■□□□□ 0.88
LINC00539-204ENST00000608957 OSCARQ8IYS5 282 aa20.52■□□□□ 0.88
LINC00539-204ENST00000608957 TDRD9Q8NDG6 1382 aaKnown RBP20.49■□□□□ 0.87
LINC00539-204ENST00000608957 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
LINC00539-204ENST00000608957 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
LINC00539-204ENST00000608957 TOP2BQ02880 1626 aa20.43■□□□□ 0.86
LINC00539-204ENST00000608957 PBRM1Q86U86 1689 aa20.42■□□□□ 0.86
LINC00539-204ENST00000608957 SNAPC4Q5SXM2 1469 aa20.4■□□□□ 0.86
LINC00539-204ENST00000608957 ABCA5Q8WWZ7 1642 aa20.39■□□□□ 0.86
LINC00539-204ENST00000608957 ABCA10Q8WWZ4 1543 aa20.39■□□□□ 0.85
LINC00539-204ENST00000608957 WRNQ14191 1432 aaPredicted RBP eCLIP20.39■□□□□ 0.85
LINC00539-204ENST00000608957 RIMBP3CA6NJZ7 1639 aa20.37■□□□□ 0.85
LINC00539-204ENST00000608957 RIMBP3BA6NNM3 1639 aa20.37■□□□□ 0.85
LINC00539-204ENST00000608957 RIMBP3Q9UFD9 1639 aa20.37■□□□□ 0.85
LINC00539-204ENST00000608957 GRIN2BQ13224 1484 aa20.36■□□□□ 0.85
LINC00539-204ENST00000608957 GAPVD1Q14C86 1478 aa20.34■□□□□ 0.85
LINC00539-204ENST00000608957 MAGI1Q96QZ7 1491 aaPredicted RBP20.32■□□□□ 0.84
LINC00539-204ENST00000608957 FBLN2P98095 1184 aa20.3■□□□□ 0.84
LINC00539-204ENST00000608957 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
LINC00539-204ENST00000608957 ARHGEF11O15085 1522 aa20.29■□□□□ 0.84
LINC00539-204ENST00000608957 SYNJ2O15056 1496 aa20.26■□□□□ 0.83
LINC00539-204ENST00000608957 CLASP1Q7Z460 1538 aa20.24■□□□□ 0.83
LINC00539-204ENST00000608957 CHMP7Q8WUX9 453 aaPredicted RBP20.2■□□□□ 0.82
LINC00539-204ENST00000608957 ADAMTS12P58397 1594 aa20.2■□□□□ 0.82
LINC00539-204ENST00000608957 ARAP1Q96P48 1450 aa20.14■□□□□ 0.81
LINC00539-204ENST00000608957 ERICH3Q5RHP9 1530 aa20.13■□□□□ 0.81
LINC00539-204ENST00000608957 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
LINC00539-204ENST00000608957 CEP170Q5SW79 1584 aa20.09■□□□□ 0.81
LINC00539-204ENST00000608957 FHAD1B1AJZ9 1412 aa20.08■□□□□ 0.8
LINC00539-204ENST00000608957 NUP160Q12769 1436 aa20.05■□□□□ 0.8
LINC00539-204ENST00000608957 CYB5RLQ6IPT4 315 aa20.04■□□□□ 0.8
LINC00539-204ENST00000608957 ERCC6L2Q5T890 1561 aa20■□□□□ 0.79
LINC00539-204ENST00000608957 SHROOM2Q13796 1616 aa19.98■□□□□ 0.79
LINC00539-204ENST00000608957 KIF27Q86VH2 1401 aa19.94■□□□□ 0.78
LINC00539-204ENST00000608957 IGF1RP08069 1367 aa19.94■□□□□ 0.78
LINC00539-204ENST00000608957 CUL7Q14999 1698 aa19.93■□□□□ 0.78
LINC00539-204ENST00000608957 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
LINC00539-204ENST00000608957 CARMIL1Q5VZK9 1371 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms