RNA–Protein interactions for RNA: ENST00000608621.5

POLR2J3-219, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 4

Gene POLR2J3, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-219ENST00000608621 NISCHQ9Y2I1 1504 aa33.43■■■□□ 2.94
POLR2J3-219ENST00000608621 ABCC9O60706 1549 aa30.02■■■□□ 2.4
POLR2J3-219ENST00000608621 CCDC180Q9P1Z9 1646 aa29.93■■■□□ 2.38
POLR2J3-219ENST00000608621 RB1CC1Q8TDY2 1594 aa28.53■■■□□ 2.16
POLR2J3-219ENST00000608621 DCAF8L2P0C7V8 631 aa28.37■■■□□ 2.13
POLR2J3-219ENST00000608621 NACADO15069 1562 aa28.34■■■□□ 2.13
POLR2J3-219ENST00000608621 DNAJC5BQ9UF47 199 aa28.24■■■□□ 2.11
POLR2J3-219ENST00000608621 PABPN1Q86U42 306 aaKnown RBP eCLIP28.03■■■□□ 2.08
POLR2J3-219ENST00000608621 MYO15BQ96JP2 1530 aa27.93■■■□□ 2.06
POLR2J3-219ENST00000608621 UNC13AQ9UPW8 1703 aa27.87■■■□□ 2.05
POLR2J3-219ENST00000608621 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
POLR2J3-219ENST00000608621 ZCCHC6Q5VYS8 1495 aaKnown RBP27.68■■■□□ 2.02
POLR2J3-219ENST00000608621 DCAF1Q9Y4B6 1507 aa27.58■■■□□ 2.01
POLR2J3-219ENST00000608621 SCRIBQ14160 1630 aa27.32■■□□□ 1.96
POLR2J3-219ENST00000608621 SHROOM4Q9ULL8 1493 aa27.27■■□□□ 1.96
POLR2J3-219ENST00000608621 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
POLR2J3-219ENST00000608621 CECR2Q9BXF3 1484 aa27.03■■□□□ 1.92
POLR2J3-219ENST00000608621 EIF4G1Q04637 1599 aaKnown RBP27.02■■□□□ 1.92
POLR2J3-219ENST00000608621 NCAPD3P42695 1498 aa26.2■■□□□ 1.78
POLR2J3-219ENST00000608621 ATAD2BQ9ULI0 1458 aa26.11■■□□□ 1.77
POLR2J3-219ENST00000608621 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
POLR2J3-219ENST00000608621 SMARCA2P51531 1590 aa26.01■■□□□ 1.75
POLR2J3-219ENST00000608621 HMGXB3Q12766 1538 aa25.94■■□□□ 1.74
POLR2J3-219ENST00000608621 BAZ1AQ9NRL2 1556 aaPredicted RBP25.93■■□□□ 1.74
POLR2J3-219ENST00000608621 ERCC6Q03468 1493 aa25.91■■□□□ 1.74
POLR2J3-219ENST00000608621 DNAJC5Q9H3Z4 198 aa25.9■■□□□ 1.74
POLR2J3-219ENST00000608621 BAZ1BQ9UIG0 1483 aaKnown RBP25.85■■□□□ 1.73
POLR2J3-219ENST00000608621 CUX2O14529 1486 aa25.83■■□□□ 1.73
POLR2J3-219ENST00000608621 NESP48681 1621 aa25.8■■□□□ 1.72
POLR2J3-219ENST00000608621 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
POLR2J3-219ENST00000608621 MROH2BQ7Z745 1585 aa25.78■■□□□ 1.72
POLR2J3-219ENST00000608621 LAMC3Q9Y6N6 1575 aa25.56■■□□□ 1.68
POLR2J3-219ENST00000608621 PDS5BQ9NTI5 1447 aa25.46■■□□□ 1.67
POLR2J3-219ENST00000608621 WIZO95785 1651 aa25.46■■□□□ 1.67
POLR2J3-219ENST00000608621 THOC2Q8NI27 1593 aaKnown RBP25.46■■□□□ 1.67
POLR2J3-219ENST00000608621 CADPSQ9ULU8 1353 aa25.43■■□□□ 1.66
POLR2J3-219ENST00000608621 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
POLR2J3-219ENST00000608621 RSF1Q96T23 1441 aaPredicted RBP25.27■■□□□ 1.64
POLR2J3-219ENST00000608621 MRC2Q9UBG0 1479 aa25.21■■□□□ 1.63
POLR2J3-219ENST00000608621 WDR62O43379 1518 aa25.12■■□□□ 1.61
POLR2J3-219ENST00000608621 CEP164Q9UPV0 1460 aa25.12■■□□□ 1.61
POLR2J3-219ENST00000608621 FANCD2Q9BXW9 1451 aa25.11■■□□□ 1.61
POLR2J3-219ENST00000608621 TOP2AP11388 1531 aaKnown RBP25.11■■□□□ 1.61
POLR2J3-219ENST00000608621 CFTRP13569 1480 aa25.1■■□□□ 1.61
POLR2J3-219ENST00000608621 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
POLR2J3-219ENST00000608621 CCDC88BA6NC98 1476 aa24.89■■□□□ 1.57
POLR2J3-219ENST00000608621 TRIM41Q8WV44 630 aa24.8■■□□□ 1.56
POLR2J3-219ENST00000608621 PRDM2Q13029 1718 aa24.78■■□□□ 1.56
POLR2J3-219ENST00000608621 OSCARQ8IYS5 282 aa24.76■■□□□ 1.55
POLR2J3-219ENST00000608621 TOPBP1Q92547 1522 aa24.63■■□□□ 1.53
POLR2J3-219ENST00000608621 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
POLR2J3-219ENST00000608621 ZNF608Q9ULD9 1512 aaPredicted RBP24.6■■□□□ 1.53
POLR2J3-219ENST00000608621 ABCC8Q09428 1581 aa24.58■■□□□ 1.52
POLR2J3-219ENST00000608621 DNMBPQ6XZF7 1577 aa24.51■■□□□ 1.51
POLR2J3-219ENST00000608621 AQRO60306 1485 aaKnown RBP eCLIP24.42■■□□□ 1.54e-8■■■■□ 22.5
POLR2J3-219ENST00000608621 EIF4G3O43432 1585 aaKnown RBP24.41■■□□□ 1.5
POLR2J3-219ENST00000608621 TARBP1Q13395 1621 aaKnown RBP24.39■■□□□ 1.5
POLR2J3-219ENST00000608621 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
POLR2J3-219ENST00000608621 RIMBP3CA6NJZ7 1639 aa24.34■■□□□ 1.49
POLR2J3-219ENST00000608621 RIMBP3BA6NNM3 1639 aa24.34■■□□□ 1.49
POLR2J3-219ENST00000608621 RIMBP3Q9UFD9 1639 aa24.34■■□□□ 1.49
POLR2J3-219ENST00000608621 RAD54L2Q9Y4B4 1467 aa24.32■■□□□ 1.48
POLR2J3-219ENST00000608621 SOGA1O94964 1423 aa24.32■■□□□ 1.48
POLR2J3-219ENST00000608621 FBLN2P98095 1184 aa24.3■■□□□ 1.48
POLR2J3-219ENST00000608621 TDRD9Q8NDG6 1382 aaKnown RBP24.28■■□□□ 1.48
POLR2J3-219ENST00000608621 ARHGEF11O15085 1522 aa24.26■■□□□ 1.47
POLR2J3-219ENST00000608621 SUPT5HO00267 1087 aaKnown RBP24.25■■□□□ 1.47
POLR2J3-219ENST00000608621 CHD1O14646 1710 aa24.24■■□□□ 1.47
POLR2J3-219ENST00000608621 FGD5Q6ZNL6 1462 aa24.23■■□□□ 1.47
POLR2J3-219ENST00000608621 CUX1P39880 1505 aa24.2■■□□□ 1.47
POLR2J3-219ENST00000608621 CYB5RLQ6IPT4 315 aa24.19■■□□□ 1.46
POLR2J3-219ENST00000608621 SNAPC4Q5SXM2 1469 aa24.12■■□□□ 1.45
POLR2J3-219ENST00000608621 CHMP7Q8WUX9 453 aaPredicted RBP24.11■■□□□ 1.45
POLR2J3-219ENST00000608621 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
POLR2J3-219ENST00000608621 GRIN2BQ13224 1484 aa24.06■■□□□ 1.44
POLR2J3-219ENST00000608621 ARAP1Q96P48 1450 aa24.03■■□□□ 1.44
POLR2J3-219ENST00000608621 MAGI1Q96QZ7 1491 aaPredicted RBP24.03■■□□□ 1.44
POLR2J3-219ENST00000608621 GAPVD1Q14C86 1478 aa23.99■■□□□ 1.43
POLR2J3-219ENST00000608621 SYNJ2O15056 1496 aa23.97■■□□□ 1.43
POLR2J3-219ENST00000608621 CLASP1Q7Z460 1538 aa23.96■■□□□ 1.43
POLR2J3-219ENST00000608621 SYNJ1O43426 1573 aa23.95■■□□□ 1.43
POLR2J3-219ENST00000608621 ABCA10Q8WWZ4 1543 aa23.94■■□□□ 1.42
POLR2J3-219ENST00000608621 TRHP20396 242 aaPredicted RBP23.93■■□□□ 1.42
POLR2J3-219ENST00000608621 PBRM1Q86U86 1689 aa23.92■■□□□ 1.42
POLR2J3-219ENST00000608621 WRNQ14191 1432 aaPredicted RBP eCLIP23.87■■□□□ 1.411e-6■■■■■ 58.5
POLR2J3-219ENST00000608621 ABCA5Q8WWZ7 1642 aa23.87■■□□□ 1.41
POLR2J3-219ENST00000608621 TOP2BQ02880 1626 aa23.8■■□□□ 1.4
POLR2J3-219ENST00000608621 BIVM-ERCC5R4GMW8 1640 aa23.79■■□□□ 1.4
POLR2J3-219ENST00000608621 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
POLR2J3-219ENST00000608621 ADAMTS12P58397 1594 aa23.69■■□□□ 1.38
POLR2J3-219ENST00000608621 FHAD1B1AJZ9 1412 aa23.68■■□□□ 1.38
POLR2J3-219ENST00000608621 NUP160Q12769 1436 aa23.67■■□□□ 1.38
POLR2J3-219ENST00000608621 CEP170Q5SW79 1584 aa23.65■■□□□ 1.38
POLR2J3-219ENST00000608621 ERICH3Q5RHP9 1530 aa23.64■■□□□ 1.37
POLR2J3-219ENST00000608621 ERCC6L2Q5T890 1561 aa23.63■■□□□ 1.37
POLR2J3-219ENST00000608621 SHROOM2Q13796 1616 aa23.52■■□□□ 1.36
POLR2J3-219ENST00000608621 JPH4Q96JJ6 628 aa23.51■■□□□ 1.35
POLR2J3-219ENST00000608621 PRG4Q92954 1404 aaPredicted RBP23.48■■□□□ 1.35
POLR2J3-219ENST00000608621 IGF1RP08069 1367 aa23.41■■□□□ 1.34
POLR2J3-219ENST00000608621 KIF27Q86VH2 1401 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms