RNA–Protein interactions for RNA: ENST00000607448.5

LINC01001-203, Transcript of long intergenic non-protein coding RNA 1001, humanhuman

TSL 5 BASIC

Gene LINC01001, Length 1,569 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01001-203ENST00000607448 NISCHQ9Y2I1 1504 aa25.6■■□□□ 1.69
LINC01001-203ENST00000607448 CCDC180Q9P1Z9 1646 aa22.88■■□□□ 1.25
LINC01001-203ENST00000607448 ABCC9O60706 1549 aa22.54■■□□□ 1.2
LINC01001-203ENST00000607448 RB1CC1Q8TDY2 1594 aa21.57■■□□□ 1.04
LINC01001-203ENST00000607448 NACADO15069 1562 aa21.48■■□□□ 1.03
LINC01001-203ENST00000607448 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
LINC01001-203ENST00000607448 ZCCHC6Q5VYS8 1495 aaKnown RBP21.3■■□□□ 1
LINC01001-203ENST00000607448 UNC13AQ9UPW8 1703 aa21.27■■□□□ 1
LINC01001-203ENST00000607448 MYO15BQ96JP2 1530 aa21.27■□□□□ 0.99
LINC01001-203ENST00000607448 DCAF1Q9Y4B6 1507 aa21.13■□□□□ 0.97
LINC01001-203ENST00000607448 BICRAQ9NZM4 1560 aa21.02■□□□□ 0.95
LINC01001-203ENST00000607448 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
LINC01001-203ENST00000607448 SCRIBQ14160 1630 aa20.9■□□□□ 0.94
LINC01001-203ENST00000607448 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
LINC01001-203ENST00000607448 SHROOM4Q9ULL8 1493 aa20.62■□□□□ 0.89
LINC01001-203ENST00000607448 EIF4G1Q04637 1599 aaKnown RBP20.43■□□□□ 0.86
LINC01001-203ENST00000607448 CC2D2AQ9P2K1 1620 aa20.42■□□□□ 0.86
LINC01001-203ENST00000607448 CECR2Q9BXF3 1484 aa20.24■□□□□ 0.83
LINC01001-203ENST00000607448 SMARCA4P51532 1647 aa19.95■□□□□ 0.78
LINC01001-203ENST00000607448 BAZ1AQ9NRL2 1556 aaPredicted RBP19.84■□□□□ 0.77
LINC01001-203ENST00000607448 ATAD2BQ9ULI0 1458 aa19.82■□□□□ 0.76
LINC01001-203ENST00000607448 NCAPD3P42695 1498 aa19.81■□□□□ 0.76
LINC01001-203ENST00000607448 SMARCA2P51531 1590 aa19.77■□□□□ 0.76
LINC01001-203ENST00000607448 MROH2BQ7Z745 1585 aa19.76■□□□□ 0.75
LINC01001-203ENST00000607448 HMGXB3Q12766 1538 aa19.74■□□□□ 0.75
LINC01001-203ENST00000607448 PEG3Q9GZU2 1588 aa19.72■□□□□ 0.75
LINC01001-203ENST00000607448 BAZ1BQ9UIG0 1483 aaKnown RBP19.65■□□□□ 0.74
LINC01001-203ENST00000607448 WIZO95785 1651 aa19.6■□□□□ 0.73
LINC01001-203ENST00000607448 NESP48681 1621 aa19.5■□□□□ 0.71
LINC01001-203ENST00000607448 RSF1Q96T23 1441 aaPredicted RBP19.43■□□□□ 0.7
LINC01001-203ENST00000607448 ERCC6Q03468 1493 aa19.39■□□□□ 0.69
LINC01001-203ENST00000607448 LAMC3Q9Y6N6 1575 aa19.36■□□□□ 0.69
LINC01001-203ENST00000607448 KIF21AQ7Z4S6 1674 aa19.32■□□□□ 0.68
LINC01001-203ENST00000607448 TOP2AP11388 1531 aaKnown RBP19.3■□□□□ 0.68
LINC01001-203ENST00000607448 THOC2Q8NI27 1593 aaKnown RBP19.26■□□□□ 0.67
LINC01001-203ENST00000607448 CUX2O14529 1486 aa19.24■□□□□ 0.67
LINC01001-203ENST00000607448 CADPSQ9ULU8 1353 aa19.21■□□□□ 0.67
LINC01001-203ENST00000607448 PDS5BQ9NTI5 1447 aa19.16■□□□□ 0.66
LINC01001-203ENST00000607448 CFTRP13569 1480 aa19.1■□□□□ 0.65
LINC01001-203ENST00000607448 PRDM2Q13029 1718 aa19.07■□□□□ 0.64
LINC01001-203ENST00000607448 CCDC88BA6NC98 1476 aa19.06■□□□□ 0.64
LINC01001-203ENST00000607448 FANCD2Q9BXW9 1451 aa19.03■□□□□ 0.64
LINC01001-203ENST00000607448 MRC2Q9UBG0 1479 aa19.03■□□□□ 0.64
LINC01001-203ENST00000607448 CEP164Q9UPV0 1460 aa19.02■□□□□ 0.64
LINC01001-203ENST00000607448 WDR62O43379 1518 aa19.01■□□□□ 0.63
LINC01001-203ENST00000607448 URB2Q14146 1524 aaKnown RBP18.9■□□□□ 0.62
LINC01001-203ENST00000607448 DNAJC5Q9H3Z4 198 aa18.85■□□□□ 0.61
LINC01001-203ENST00000607448 SUPT5HO00267 1087 aaKnown RBP18.77■□□□□ 0.6
LINC01001-203ENST00000607448 TOPBP1Q92547 1522 aa18.73■□□□□ 0.59
LINC01001-203ENST00000607448 DNMBPQ6XZF7 1577 aa18.7■□□□□ 0.58
LINC01001-203ENST00000607448 ZNF608Q9ULD9 1512 aaPredicted RBP18.62■□□□□ 0.57
LINC01001-203ENST00000607448 ABCC8Q09428 1581 aa18.62■□□□□ 0.57
LINC01001-203ENST00000607448 IFT140Q96RY7 1462 aa18.61■□□□□ 0.57
LINC01001-203ENST00000607448 TARBP1Q13395 1621 aaKnown RBP18.59■□□□□ 0.57
LINC01001-203ENST00000607448 EIF4G3O43432 1585 aaKnown RBP18.57■□□□□ 0.56
LINC01001-203ENST00000607448 POLA1P09884 1462 aaPredicted RBP18.56■□□□□ 0.56
LINC01001-203ENST00000607448 CUX1P39880 1505 aa18.54■□□□□ 0.56
LINC01001-203ENST00000607448 RAD54L2Q9Y4B4 1467 aa18.5■□□□□ 0.55
LINC01001-203ENST00000607448 FGD5Q6ZNL6 1462 aa18.49■□□□□ 0.55
LINC01001-203ENST00000607448 AQRO60306 1485 aaKnown RBP eCLIP18.46■□□□□ 0.55
LINC01001-203ENST00000607448 WDR97A6NE52 1622 aa18.45■□□□□ 0.54
LINC01001-203ENST00000607448 SOGA1O94964 1423 aa18.43■□□□□ 0.54
LINC01001-203ENST00000607448 CHD1O14646 1710 aa18.42■□□□□ 0.54
LINC01001-203ENST00000607448 TDRD9Q8NDG6 1382 aaKnown RBP18.38■□□□□ 0.53
LINC01001-203ENST00000607448 BIVM-ERCC5R4GMW8 1640 aa18.37■□□□□ 0.53
LINC01001-203ENST00000607448 SYNJ1O43426 1573 aa18.37■□□□□ 0.53
LINC01001-203ENST00000607448 OSCARQ8IYS5 282 aa18.37■□□□□ 0.53
LINC01001-203ENST00000607448 PBRM1Q86U86 1689 aa18.33■□□□□ 0.53
LINC01001-203ENST00000607448 TOP2BQ02880 1626 aa18.33■□□□□ 0.53
LINC01001-203ENST00000607448 WRNQ14191 1432 aaPredicted RBP eCLIP18.3■□□□□ 0.52
LINC01001-203ENST00000607448 ABCA5Q8WWZ7 1642 aa18.29■□□□□ 0.52
LINC01001-203ENST00000607448 SNAPC4Q5SXM2 1469 aa18.28■□□□□ 0.52
LINC01001-203ENST00000607448 ABCA10Q8WWZ4 1543 aa18.27■□□□□ 0.52
LINC01001-203ENST00000607448 RIMBP3CA6NJZ7 1639 aa18.24■□□□□ 0.51
LINC01001-203ENST00000607448 RIMBP3BA6NNM3 1639 aa18.24■□□□□ 0.51
LINC01001-203ENST00000607448 RIMBP3Q9UFD9 1639 aa18.24■□□□□ 0.51
LINC01001-203ENST00000607448 GRIN2BQ13224 1484 aa18.24■□□□□ 0.51
LINC01001-203ENST00000607448 GAPVD1Q14C86 1478 aa18.23■□□□□ 0.51
LINC01001-203ENST00000607448 FBLN2P98095 1184 aa18.21■□□□□ 0.51
LINC01001-203ENST00000607448 MAGI1Q96QZ7 1491 aaPredicted RBP18.21■□□□□ 0.51
LINC01001-203ENST00000607448 TRIM41Q8WV44 630 aa18.18■□□□□ 0.5
LINC01001-203ENST00000607448 ARHGEF11O15085 1522 aa18.18■□□□□ 0.5
LINC01001-203ENST00000607448 SYNJ2O15056 1496 aa18.16■□□□□ 0.5
LINC01001-203ENST00000607448 CLASP1Q7Z460 1538 aa18.13■□□□□ 0.49
LINC01001-203ENST00000607448 ADAMTS12P58397 1594 aa18.11■□□□□ 0.49
LINC01001-203ENST00000607448 CHMP7Q8WUX9 453 aaPredicted RBP18.11■□□□□ 0.49
LINC01001-203ENST00000607448 ERICH3Q5RHP9 1530 aa18.05■□□□□ 0.48
LINC01001-203ENST00000607448 GRIN2AQ12879 1464 aa18.03■□□□□ 0.48
LINC01001-203ENST00000607448 ARAP1Q96P48 1450 aa18.03■□□□□ 0.48
LINC01001-203ENST00000607448 CEP170Q5SW79 1584 aa18.02■□□□□ 0.47
LINC01001-203ENST00000607448 FHAD1B1AJZ9 1412 aa17.98■□□□□ 0.47
LINC01001-203ENST00000607448 CYB5RLQ6IPT4 315 aa17.96■□□□□ 0.46
LINC01001-203ENST00000607448 NUP160Q12769 1436 aa17.95■□□□□ 0.46
LINC01001-203ENST00000607448 ERCC6L2Q5T890 1561 aa17.93■□□□□ 0.46
LINC01001-203ENST00000607448 SHROOM2Q13796 1616 aa17.91■□□□□ 0.46
LINC01001-203ENST00000607448 KIF27Q86VH2 1401 aa17.89■□□□□ 0.45
LINC01001-203ENST00000607448 CUL7Q14999 1698 aa17.89■□□□□ 0.45
LINC01001-203ENST00000607448 RUSC2Q8N2Y8 1516 aa17.87■□□□□ 0.45
LINC01001-203ENST00000607448 IGF1RP08069 1367 aa17.87■□□□□ 0.45
LINC01001-203ENST00000607448 CARMIL1Q5VZK9 1371 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms