RNA–Protein interactions for RNA: ENST00000607212.1

CTSA-216, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 590 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-216ENST00000607212 NISCHQ9Y2I1 1504 aa37.08■■■■□ 3.53
CTSA-216ENST00000607212 ABCC9O60706 1549 aa33.46■■■□□ 2.95
CTSA-216ENST00000607212 CCDC180Q9P1Z9 1646 aa33.33■■■□□ 2.93
CTSA-216ENST00000607212 RB1CC1Q8TDY2 1594 aa31.8■■■□□ 2.68
CTSA-216ENST00000607212 DCAF8L2P0C7V8 631 aa31.57■■■□□ 2.64
CTSA-216ENST00000607212 NACADO15069 1562 aa31.51■■■□□ 2.64
CTSA-216ENST00000607212 DNAJC5BQ9UF47 199 aa31.32■■■□□ 2.6
CTSA-216ENST00000607212 PABPN1Q86U42 306 aaKnown RBP eCLIP31.16■■■□□ 2.58
CTSA-216ENST00000607212 UNC13AQ9UPW8 1703 aa31.08■■■□□ 2.57
CTSA-216ENST00000607212 MYO15BQ96JP2 1530 aa30.94■■■□□ 2.54
CTSA-216ENST00000607212 BICRAQ9NZM4 1560 aa30.77■■■□□ 2.52
CTSA-216ENST00000607212 ZCCHC6Q5VYS8 1495 aaKnown RBP30.7■■■□□ 2.51
CTSA-216ENST00000607212 DCAF1Q9Y4B6 1507 aa30.55■■■□□ 2.48
CTSA-216ENST00000607212 SCRIBQ14160 1630 aa30.47■■■□□ 2.47
CTSA-216ENST00000607212 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
CTSA-216ENST00000607212 CC2D2AQ9P2K1 1620 aa30.19■■■□□ 2.42
CTSA-216ENST00000607212 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
CTSA-216ENST00000607212 EIF4G1Q04637 1599 aaKnown RBP30.08■■■□□ 2.41
CTSA-216ENST00000607212 NCAPD3P42695 1498 aa29.04■■■□□ 2.24
CTSA-216ENST00000607212 SMARCA4P51532 1647 aa28.98■■■□□ 2.23
CTSA-216ENST00000607212 ATAD2BQ9ULI0 1458 aa28.97■■■□□ 2.23
CTSA-216ENST00000607212 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
CTSA-216ENST00000607212 SMARCA2P51531 1590 aa28.95■■■□□ 2.22
CTSA-216ENST00000607212 HMGXB3Q12766 1538 aa28.85■■■□□ 2.21
CTSA-216ENST00000607212 DNAJC5Q9H3Z4 198 aa28.84■■■□□ 2.21
CTSA-216ENST00000607212 BAZ1AQ9NRL2 1556 aaPredicted RBP28.83■■■□□ 2.21
CTSA-216ENST00000607212 CUX2O14529 1486 aa28.8■■■□□ 2.2
CTSA-216ENST00000607212 BAZ1BQ9UIG0 1483 aaKnown RBP28.78■■■□□ 2.2
CTSA-216ENST00000607212 NESP48681 1621 aa28.69■■■□□ 2.18
CTSA-216ENST00000607212 PEG3Q9GZU2 1588 aa28.59■■■□□ 2.17
CTSA-216ENST00000607212 MROH2BQ7Z745 1585 aa28.58■■■□□ 2.17
CTSA-216ENST00000607212 LAMC3Q9Y6N6 1575 aa28.46■■■□□ 2.15
CTSA-216ENST00000607212 THOC2Q8NI27 1593 aaKnown RBP28.38■■■□□ 2.13
CTSA-216ENST00000607212 KIF21AQ7Z4S6 1674 aa28.36■■■□□ 2.13
CTSA-216ENST00000607212 PDS5BQ9NTI5 1447 aa28.34■■■□□ 2.13
CTSA-216ENST00000607212 WIZO95785 1651 aa28.3■■■□□ 2.12
CTSA-216ENST00000607212 CADPSQ9ULU8 1353 aa28.21■■■□□ 2.11
CTSA-216ENST00000607212 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
CTSA-216ENST00000607212 CEP164Q9UPV0 1460 aa27.99■■■□□ 2.07
CTSA-216ENST00000607212 WDR62O43379 1518 aa27.97■■■□□ 2.07
CTSA-216ENST00000607212 RSF1Q96T23 1441 aaPredicted RBP27.94■■■□□ 2.06
CTSA-216ENST00000607212 FANCD2Q9BXW9 1451 aa27.92■■■□□ 2.06
CTSA-216ENST00000607212 TOP2AP11388 1531 aaKnown RBP27.91■■■□□ 2.06
CTSA-216ENST00000607212 CFTRP13569 1480 aa27.83■■■□□ 2.05
CTSA-216ENST00000607212 TRIM41Q8WV44 630 aa27.74■■■□□ 2.03
CTSA-216ENST00000607212 PRDM2Q13029 1718 aa27.67■■■□□ 2.02
CTSA-216ENST00000607212 URB2Q14146 1524 aaKnown RBP27.67■■■□□ 2.02
CTSA-216ENST00000607212 CCDC88BA6NC98 1476 aa27.57■■■□□ 2
CTSA-216ENST00000607212 OSCARQ8IYS5 282 aa27.53■■■□□ 2
CTSA-216ENST00000607212 IFT140Q96RY7 1462 aa27.4■■□□□ 1.98
CTSA-216ENST00000607212 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
CTSA-216ENST00000607212 ZNF608Q9ULD9 1512 aaPredicted RBP27.35■■□□□ 1.97
CTSA-216ENST00000607212 ABCC8Q09428 1581 aa27.31■■□□□ 1.96
CTSA-216ENST00000607212 DNMBPQ6XZF7 1577 aa27.28■■□□□ 1.96
CTSA-216ENST00000607212 EIF4G3O43432 1585 aaKnown RBP27.23■■□□□ 1.95
CTSA-216ENST00000607212 RIMBP3CA6NJZ7 1639 aa27.18■■□□□ 1.94
CTSA-216ENST00000607212 RIMBP3BA6NNM3 1639 aa27.18■■□□□ 1.94
CTSA-216ENST00000607212 RIMBP3Q9UFD9 1639 aa27.18■■□□□ 1.94
CTSA-216ENST00000607212 AQRO60306 1485 aaKnown RBP eCLIP27.12■■□□□ 1.93
CTSA-216ENST00000607212 TARBP1Q13395 1621 aaKnown RBP27.1■■□□□ 1.93
CTSA-216ENST00000607212 FBLN2P98095 1184 aa27.1■■□□□ 1.93
CTSA-216ENST00000607212 CHD1O14646 1710 aa27.09■■□□□ 1.93
CTSA-216ENST00000607212 POLA1P09884 1462 aaPredicted RBP27.08■■□□□ 1.93
CTSA-216ENST00000607212 ARHGEF11O15085 1522 aa27.06■■□□□ 1.92
CTSA-216ENST00000607212 RAD54L2Q9Y4B4 1467 aa27.02■■□□□ 1.92
CTSA-216ENST00000607212 SOGA1O94964 1423 aa26.99■■□□□ 1.91
CTSA-216ENST00000607212 TDRD9Q8NDG6 1382 aaKnown RBP26.96■■□□□ 1.91
CTSA-216ENST00000607212 CYB5RLQ6IPT4 315 aa26.94■■□□□ 1.9
CTSA-216ENST00000607212 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
CTSA-216ENST00000607212 SNAPC4Q5SXM2 1469 aa26.87■■□□□ 1.89
CTSA-216ENST00000607212 CUX1P39880 1505 aa26.86■■□□□ 1.89
CTSA-216ENST00000607212 SUPT5HO00267 1087 aaKnown RBP26.86■■□□□ 1.89
CTSA-216ENST00000607212 WDR97A6NE52 1622 aa26.83■■□□□ 1.88
CTSA-216ENST00000607212 CHMP7Q8WUX9 453 aaPredicted RBP26.82■■□□□ 1.88
CTSA-216ENST00000607212 ARAP1Q96P48 1450 aa26.77■■□□□ 1.88
CTSA-216ENST00000607212 GRIN2BQ13224 1484 aa26.75■■□□□ 1.87
CTSA-216ENST00000607212 TRHP20396 242 aaPredicted RBP26.75■■□□□ 1.87
CTSA-216ENST00000607212 MAGI1Q96QZ7 1491 aaPredicted RBP26.74■■□□□ 1.87
CTSA-216ENST00000607212 SYNJ1O43426 1573 aa26.74■■□□□ 1.87
CTSA-216ENST00000607212 PBRM1Q86U86 1689 aa26.71■■□□□ 1.87
CTSA-216ENST00000607212 GAPVD1Q14C86 1478 aa26.67■■□□□ 1.86
CTSA-216ENST00000607212 CLASP1Q7Z460 1538 aa26.66■■□□□ 1.86
CTSA-216ENST00000607212 SYNJ2O15056 1496 aa26.66■■□□□ 1.86
CTSA-216ENST00000607212 ABCA10Q8WWZ4 1543 aa26.58■■□□□ 1.85
CTSA-216ENST00000607212 ABCA5Q8WWZ7 1642 aa26.56■■□□□ 1.84
CTSA-216ENST00000607212 WRNQ14191 1432 aaPredicted RBP eCLIP26.5■■□□□ 1.83
CTSA-216ENST00000607212 TOP2BQ02880 1626 aa26.43■■□□□ 1.82
CTSA-216ENST00000607212 BIVM-ERCC5R4GMW8 1640 aa26.43■■□□□ 1.82
CTSA-216ENST00000607212 GRIN2AQ12879 1464 aa26.4■■□□□ 1.82
CTSA-216ENST00000607212 ADAMTS12P58397 1594 aa26.4■■□□□ 1.82
CTSA-216ENST00000607212 CEP170Q5SW79 1584 aa26.31■■□□□ 1.8
CTSA-216ENST00000607212 FHAD1B1AJZ9 1412 aa26.31■■□□□ 1.8
CTSA-216ENST00000607212 ERCC6L2Q5T890 1561 aa26.28■■□□□ 1.8
CTSA-216ENST00000607212 NUP160Q12769 1436 aa26.26■■□□□ 1.79
CTSA-216ENST00000607212 ERICH3Q5RHP9 1530 aa26.25■■□□□ 1.79
CTSA-216ENST00000607212 SHROOM2Q13796 1616 aa26.17■■□□□ 1.78
CTSA-216ENST00000607212 PRG4Q92954 1404 aaPredicted RBP26.1■■□□□ 1.77
CTSA-216ENST00000607212 JPH4Q96JJ6 628 aa26.07■■□□□ 1.76
CTSA-216ENST00000607212 AEBP2Q6ZN18 517 aaPredicted RBP26.05■■□□□ 1.76
CTSA-216ENST00000607212 RUSC2Q8N2Y8 1516 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms