RNA–Protein interactions for RNA: ENST00000607020.5

SSBP4-214, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 3

Gene SSBP4, Length 504 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-214ENST00000607020 NISCHQ9Y2I1 1504 aa38.15■■■■□ 3.7
SSBP4-214ENST00000607020 ABCC9O60706 1549 aa34.77■■■■□ 3.16
SSBP4-214ENST00000607020 CCDC180Q9P1Z9 1646 aa34.27■■■■□ 3.08
SSBP4-214ENST00000607020 DNAJC5BQ9UF47 199 aa33.15■■■□□ 2.9
SSBP4-214ENST00000607020 RB1CC1Q8TDY2 1594 aa32.91■■■□□ 2.86
SSBP4-214ENST00000607020 NACADO15069 1562 aa32.63■■■□□ 2.81
SSBP4-214ENST00000607020 PABPN1Q86U42 306 aaKnown RBP eCLIP32.39■■■□□ 2.782e-7■■□□□ 13.6
SSBP4-214ENST00000607020 DCAF8L2P0C7V8 631 aa32.38■■■□□ 2.77
SSBP4-214ENST00000607020 MYO15BQ96JP2 1530 aa32.15■■■□□ 2.74
SSBP4-214ENST00000607020 BICRAQ9NZM4 1560 aa31.97■■■□□ 2.71
SSBP4-214ENST00000607020 UNC13AQ9UPW8 1703 aa31.92■■■□□ 2.7
SSBP4-214ENST00000607020 SHROOM4Q9ULL8 1493 aa31.61■■■□□ 2.65
SSBP4-214ENST00000607020 DCAF1Q9Y4B6 1507 aa31.54■■■□□ 2.64
SSBP4-214ENST00000607020 ZCCHC6Q5VYS8 1495 aaKnown RBP31.51■■■□□ 2.63
SSBP4-214ENST00000607020 CECR2Q9BXF3 1484 aa31.42■■■□□ 2.62
SSBP4-214ENST00000607020 CC2D2AQ9P2K1 1620 aa31.35■■■□□ 2.61
SSBP4-214ENST00000607020 EIF4G1Q04637 1599 aaKnown RBP31.22■■■□□ 2.59
SSBP4-214ENST00000607020 SCRIBQ14160 1630 aa31.16■■■□□ 2.58
SSBP4-214ENST00000607020 DNAJC5Q9H3Z4 198 aa30.81■■■□□ 2.52
SSBP4-214ENST00000607020 CUX2O14529 1486 aa30.23■■■□□ 2.43
SSBP4-214ENST00000607020 NCAPD3P42695 1498 aa30.23■■■□□ 2.43
SSBP4-214ENST00000607020 ERCC6Q03468 1493 aa30.06■■■□□ 2.4
SSBP4-214ENST00000607020 ATAD2BQ9ULI0 1458 aa30.02■■■□□ 2.4
SSBP4-214ENST00000607020 SMARCA2P51531 1590 aa29.86■■■□□ 2.37
SSBP4-214ENST00000607020 HMGXB3Q12766 1538 aa29.85■■■□□ 2.37
SSBP4-214ENST00000607020 NESP48681 1621 aa29.74■■■□□ 2.35
SSBP4-214ENST00000607020 SMARCA4P51532 1647 aa29.74■■■□□ 2.35
SSBP4-214ENST00000607020 BAZ1BQ9UIG0 1483 aaKnown RBP29.64■■■□□ 2.34
SSBP4-214ENST00000607020 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
SSBP4-214ENST00000607020 PEG3Q9GZU2 1588 aa29.56■■■□□ 2.32
SSBP4-214ENST00000607020 LAMC3Q9Y6N6 1575 aa29.48■■■□□ 2.31
SSBP4-214ENST00000607020 THOC2Q8NI27 1593 aaKnown RBP29.47■■■□□ 2.31
SSBP4-214ENST00000607020 PDS5BQ9NTI5 1447 aa29.43■■■□□ 2.3
SSBP4-214ENST00000607020 MROH2BQ7Z745 1585 aa29.35■■■□□ 2.29
SSBP4-214ENST00000607020 CADPSQ9ULU8 1353 aa29.28■■■□□ 2.28
SSBP4-214ENST00000607020 KIF21AQ7Z4S6 1674 aa29.17■■■□□ 2.26
SSBP4-214ENST00000607020 MRC2Q9UBG0 1479 aa29.13■■■□□ 2.25
SSBP4-214ENST00000607020 TRIM41Q8WV44 630 aa29.12■■■□□ 2.25
SSBP4-214ENST00000607020 WDR62O43379 1518 aa29.05■■■□□ 2.24
SSBP4-214ENST00000607020 CEP164Q9UPV0 1460 aa28.91■■■□□ 2.22
SSBP4-214ENST00000607020 FANCD2Q9BXW9 1451 aa28.87■■■□□ 2.21
SSBP4-214ENST00000607020 OSCARQ8IYS5 282 aa28.86■■■□□ 2.21
SSBP4-214ENST00000607020 WIZO95785 1651 aa28.86■■■□□ 2.21
SSBP4-214ENST00000607020 CFTRP13569 1480 aa28.84■■■□□ 2.21
SSBP4-214ENST00000607020 RSF1Q96T23 1441 aaPredicted RBP28.68■■■□□ 2.18
SSBP4-214ENST00000607020 URB2Q14146 1524 aaKnown RBP28.64■■■□□ 2.17
SSBP4-214ENST00000607020 TOP2AP11388 1531 aaKnown RBP28.56■■■□□ 2.16
SSBP4-214ENST00000607020 IFT140Q96RY7 1462 aa28.4■■■□□ 2.14
SSBP4-214ENST00000607020 ZNF608Q9ULD9 1512 aaPredicted RBP28.35■■■□□ 2.13
SSBP4-214ENST00000607020 RIMBP3CA6NJZ7 1639 aa28.3■■■□□ 2.12
SSBP4-214ENST00000607020 RIMBP3BA6NNM3 1639 aa28.3■■■□□ 2.12
SSBP4-214ENST00000607020 RIMBP3Q9UFD9 1639 aa28.3■■■□□ 2.12
SSBP4-214ENST00000607020 CCDC88BA6NC98 1476 aa28.3■■■□□ 2.12
SSBP4-214ENST00000607020 TOPBP1Q92547 1522 aa28.26■■■□□ 2.11
SSBP4-214ENST00000607020 ARHGEF11O15085 1522 aa28.25■■■□□ 2.11
SSBP4-214ENST00000607020 ABCC8Q09428 1581 aa28.24■■■□□ 2.11
SSBP4-214ENST00000607020 PRDM2Q13029 1718 aa28.16■■■□□ 2.1
SSBP4-214ENST00000607020 CYB5RLQ6IPT4 315 aa28.16■■■□□ 2.1
SSBP4-214ENST00000607020 AQRO60306 1485 aaKnown RBP eCLIP28.08■■■□□ 2.098e-8■■■■■ 50.9
SSBP4-214ENST00000607020 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
SSBP4-214ENST00000607020 EIF4G3O43432 1585 aaKnown RBP28.06■■■□□ 2.08
SSBP4-214ENST00000607020 TARBP1Q13395 1621 aaKnown RBP27.99■■■□□ 2.07
SSBP4-214ENST00000607020 FBLN2P98095 1184 aa27.97■■■□□ 2.07
SSBP4-214ENST00000607020 ARAP1Q96P48 1450 aa27.95■■■□□ 2.07
SSBP4-214ENST00000607020 POLA1P09884 1462 aaPredicted RBP27.95■■■□□ 2.06
SSBP4-214ENST00000607020 TRHP20396 242 aaPredicted RBP27.93■■■□□ 2.06
SSBP4-214ENST00000607020 SOGA1O94964 1423 aa27.87■■■□□ 2.05
SSBP4-214ENST00000607020 TDRD9Q8NDG6 1382 aaKnown RBP27.86■■■□□ 2.05
SSBP4-214ENST00000607020 RAD54L2Q9Y4B4 1467 aa27.84■■■□□ 2.05
SSBP4-214ENST00000607020 CHD1O14646 1710 aa27.83■■■□□ 2.05
SSBP4-214ENST00000607020 CHMP7Q8WUX9 453 aaPredicted RBP27.75■■■□□ 2.03
SSBP4-214ENST00000607020 SNAPC4Q5SXM2 1469 aa27.72■■■□□ 2.03
SSBP4-214ENST00000607020 WDR97A6NE52 1622 aa27.71■■■□□ 2.03
SSBP4-214ENST00000607020 CLASP1Q7Z460 1538 aa27.7■■■□□ 2.02
SSBP4-214ENST00000607020 MAGI1Q96QZ7 1491 aaPredicted RBP27.69■■■□□ 2.02
SSBP4-214ENST00000607020 FGD5Q6ZNL6 1462 aa27.68■■■□□ 2.02
SSBP4-214ENST00000607020 GRIN2BQ13224 1484 aa27.65■■■□□ 2.02
SSBP4-214ENST00000607020 SYNJ1O43426 1573 aa27.61■■■□□ 2.01
SSBP4-214ENST00000607020 SYNJ2O15056 1496 aa27.6■■■□□ 2.01
SSBP4-214ENST00000607020 CUX1P39880 1505 aa27.59■■■□□ 2.01
SSBP4-214ENST00000607020 GAPVD1Q14C86 1478 aa27.48■■□□□ 1.99
SSBP4-214ENST00000607020 AEBP2Q6ZN18 517 aaPredicted RBP27.44■■□□□ 1.98
SSBP4-214ENST00000607020 ABCA10Q8WWZ4 1543 aa27.41■■□□□ 1.98
SSBP4-214ENST00000607020 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
SSBP4-214ENST00000607020 GRIN2AQ12879 1464 aa27.26■■□□□ 1.95
SSBP4-214ENST00000607020 PBRM1Q86U86 1689 aa27.26■■□□□ 1.95
SSBP4-214ENST00000607020 NUP160Q12769 1436 aa27.25■■□□□ 1.95
SSBP4-214ENST00000607020 WRNQ14191 1432 aaPredicted RBP eCLIP27.24■■□□□ 1.95
SSBP4-214ENST00000607020 ERCC6L2Q5T890 1561 aa27.18■■□□□ 1.94
SSBP4-214ENST00000607020 FHAD1B1AJZ9 1412 aa27.16■■□□□ 1.94
SSBP4-214ENST00000607020 CEP170Q5SW79 1584 aa27.14■■□□□ 1.94
SSBP4-214ENST00000607020 ADAMTS12P58397 1594 aa27.11■■□□□ 1.93
SSBP4-214ENST00000607020 SHROOM2Q13796 1616 aa27.05■■□□□ 1.92
SSBP4-214ENST00000607020 ERICH3Q5RHP9 1530 aa27.03■■□□□ 1.92
SSBP4-214ENST00000607020 JPH4Q96JJ6 628 aa27.03■■□□□ 1.92
SSBP4-214ENST00000607020 SUPT5HO00267 1087 aaKnown RBP27.02■■□□□ 1.92
SSBP4-214ENST00000607020 TOP2BQ02880 1626 aa27.01■■□□□ 1.91
SSBP4-214ENST00000607020 PRG4Q92954 1404 aaPredicted RBP26.99■■□□□ 1.91
SSBP4-214ENST00000607020 BIVM-ERCC5R4GMW8 1640 aa26.95■■□□□ 1.91
SSBP4-214ENST00000607020 FAM69CQ0P6D2 419 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms