RNA–Protein interactions for RNA: ENST00000606952.5

PMF1-206, Transcript of polyamine modulated factor 1, humanhuman

TSL 1 (best)

Gene PMF1, Length 1,275 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-206ENST00000606952 NISCHQ9Y2I1 1504 aa38.75■■■■□ 3.79
PMF1-206ENST00000606952 CCDC180Q9P1Z9 1646 aa34.18■■■■□ 3.06
PMF1-206ENST00000606952 ZCCHC6Q5VYS8 1495 aaKnown RBP32.52■■■□□ 2.8
PMF1-206ENST00000606952 ABCC9O60706 1549 aa32.36■■■□□ 2.77
PMF1-206ENST00000606952 DCAF1Q9Y4B6 1507 aa32.21■■■□□ 2.75
PMF1-206ENST00000606952 MYO15BQ96JP2 1530 aa32.05■■■□□ 2.72
PMF1-206ENST00000606952 NACADO15069 1562 aa31.85■■■□□ 2.69
PMF1-206ENST00000606952 DCAF8L2P0C7V8 631 aa31.66■■■□□ 2.66
PMF1-206ENST00000606952 RB1CC1Q8TDY2 1594 aa31.64■■■□□ 2.66
PMF1-206ENST00000606952 SCRIBQ14160 1630 aa31.09■■■□□ 2.57
PMF1-206ENST00000606952 UNC13AQ9UPW8 1703 aa31.01■■■□□ 2.55
PMF1-206ENST00000606952 SHROOM4Q9ULL8 1493 aa30.89■■■□□ 2.54
PMF1-206ENST00000606952 BICRAQ9NZM4 1560 aa30.7■■■□□ 2.5
PMF1-206ENST00000606952 PABPN1Q86U42 306 aaKnown RBP eCLIP30.29■■■□□ 2.44
PMF1-206ENST00000606952 CECR2Q9BXF3 1484 aa30.03■■■□□ 2.4
PMF1-206ENST00000606952 BAZ1AQ9NRL2 1556 aaPredicted RBP29.98■■■□□ 2.39
PMF1-206ENST00000606952 SMARCA4P51532 1647 aa29.91■■■□□ 2.38
PMF1-206ENST00000606952 MROH2BQ7Z745 1585 aa29.86■■■□□ 2.37
PMF1-206ENST00000606952 RSF1Q96T23 1441 aaPredicted RBP29.81■■■□□ 2.36
PMF1-206ENST00000606952 EIF4G1Q04637 1599 aaKnown RBP29.77■■■□□ 2.36
PMF1-206ENST00000606952 PEG3Q9GZU2 1588 aa29.69■■■□□ 2.34
PMF1-206ENST00000606952 WIZO95785 1651 aa29.58■■■□□ 2.33
PMF1-206ENST00000606952 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
PMF1-206ENST00000606952 SUPT5HO00267 1087 aaKnown RBP29.48■■■□□ 2.31
PMF1-206ENST00000606952 ATAD2BQ9ULI0 1458 aa29.48■■■□□ 2.31
PMF1-206ENST00000606952 CC2D2AQ9P2K1 1620 aa29.42■■■□□ 2.3
PMF1-206ENST00000606952 TOP2AP11388 1531 aaKnown RBP29.37■■■□□ 2.29
PMF1-206ENST00000606952 NCAPD3P42695 1498 aa29.36■■■□□ 2.29
PMF1-206ENST00000606952 HMGXB3Q12766 1538 aa29.35■■■□□ 2.29
PMF1-206ENST00000606952 BAZ1BQ9UIG0 1483 aaKnown RBP29.24■■■□□ 2.27
PMF1-206ENST00000606952 DNAJC5BQ9UF47 199 aa29.02■■■□□ 2.24
PMF1-206ENST00000606952 CCDC88BA6NC98 1476 aa28.94■■■□□ 2.22
PMF1-206ENST00000606952 CFTRP13569 1480 aa28.56■■■□□ 2.16
PMF1-206ENST00000606952 PRDM2Q13029 1718 aa28.54■■■□□ 2.16
PMF1-206ENST00000606952 CADPSQ9ULU8 1353 aa28.49■■■□□ 2.15
PMF1-206ENST00000606952 LAMC3Q9Y6N6 1575 aa28.46■■■□□ 2.15
PMF1-206ENST00000606952 NESP48681 1621 aa28.29■■■□□ 2.12
PMF1-206ENST00000606952 FANCD2Q9BXW9 1451 aa28.15■■■□□ 2.1
PMF1-206ENST00000606952 CHIC1Q5VXU3 224 aa28.15■■■□□ 2.1
PMF1-206ENST00000606952 PDS5BQ9NTI5 1447 aa28.15■■■□□ 2.1
PMF1-206ENST00000606952 ABCC8Q09428 1581 aa28.13■■■□□ 2.09
PMF1-206ENST00000606952 KIF21AQ7Z4S6 1674 aa28.07■■■□□ 2.08
PMF1-206ENST00000606952 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
PMF1-206ENST00000606952 CEP164Q9UPV0 1460 aa28.05■■■□□ 2.08
PMF1-206ENST00000606952 BIVM-ERCC5R4GMW8 1640 aa28.03■■■□□ 2.08
PMF1-206ENST00000606952 SYNJ1O43426 1573 aa28■■■□□ 2.07
PMF1-206ENST00000606952 TOP2BQ02880 1626 aa28■■■□□ 2.07
PMF1-206ENST00000606952 CUX1P39880 1505 aa27.96■■■□□ 2.07
PMF1-206ENST00000606952 DNMBPQ6XZF7 1577 aa27.92■■■□□ 2.06
PMF1-206ENST00000606952 URB2Q14146 1524 aaKnown RBP27.86■■■□□ 2.05
PMF1-206ENST00000606952 MRC2Q9UBG0 1479 aa27.85■■■□□ 2.05
PMF1-206ENST00000606952 TRIM41Q8WV44 630 aa27.85■■■□□ 2.05
PMF1-206ENST00000606952 TOPBP1Q92547 1522 aa27.84■■■□□ 2.05
PMF1-206ENST00000606952 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
PMF1-206ENST00000606952 ERCC6Q03468 1493 aa27.81■■■□□ 2.04
PMF1-206ENST00000606952 WDR62O43379 1518 aa27.79■■■□□ 2.04
PMF1-206ENST00000606952 FGD5Q6ZNL6 1462 aa27.7■■■□□ 2.03
PMF1-206ENST00000606952 POLA1P09884 1462 aaPredicted RBP27.66■■■□□ 2.02
PMF1-206ENST00000606952 WDR97A6NE52 1622 aa27.58■■■□□ 2.01
PMF1-206ENST00000606952 ABCA10Q8WWZ4 1543 aa27.53■■■□□ 2
PMF1-206ENST00000606952 EEA1Q15075 1411 aa27.53■■■□□ 2
PMF1-206ENST00000606952 TARBP1Q13395 1621 aaKnown RBP27.52■■■□□ 2
PMF1-206ENST00000606952 CUX2O14529 1486 aa27.51■■■□□ 2
PMF1-206ENST00000606952 SOGA1O94964 1423 aa27.5■■□□□ 1.99
PMF1-206ENST00000606952 RAD54L2Q9Y4B4 1467 aa27.46■■□□□ 1.99
PMF1-206ENST00000606952 IFT140Q96RY7 1462 aa27.45■■□□□ 1.99
PMF1-206ENST00000606952 KIF27Q86VH2 1401 aa27.41■■□□□ 1.98
PMF1-206ENST00000606952 RUSC2Q8N2Y8 1516 aa27.4■■□□□ 1.98
PMF1-206ENST00000606952 ABCA5Q8WWZ7 1642 aa27.39■■□□□ 1.98
PMF1-206ENST00000606952 ERICH3Q5RHP9 1530 aa27.23■■□□□ 1.95
PMF1-206ENST00000606952 GAPVD1Q14C86 1478 aa27.23■■□□□ 1.95
PMF1-206ENST00000606952 CSRNP3Q8WYN3 585 aa27.22■■□□□ 1.95
PMF1-206ENST00000606952 KIF21BO75037 1637 aa27.22■■□□□ 1.95
PMF1-206ENST00000606952 EIF4G3O43432 1585 aaKnown RBP27.22■■□□□ 1.95
PMF1-206ENST00000606952 ZNF608Q9ULD9 1512 aaPredicted RBP27.21■■□□□ 1.95
PMF1-206ENST00000606952 PBRM1Q86U86 1689 aa27.21■■□□□ 1.95
PMF1-206ENST00000606952 TDRD9Q8NDG6 1382 aaKnown RBP27.19■■□□□ 1.94
PMF1-206ENST00000606952 IGF1RP08069 1367 aa27.18■■□□□ 1.94
PMF1-206ENST00000606952 CUL7Q14999 1698 aa27.17■■□□□ 1.94
PMF1-206ENST00000606952 FAM9AQ8IZU1 332 aaPredicted RBP27.17■■□□□ 1.94
PMF1-206ENST00000606952 PRXQ9BXM0 1461 aa27.17■■□□□ 1.94
PMF1-206ENST00000606952 GRIN2BQ13224 1484 aa27.13■■□□□ 1.93
PMF1-206ENST00000606952 AQRO60306 1485 aaKnown RBP eCLIP27.12■■□□□ 1.939e-8■■■■■ 29
PMF1-206ENST00000606952 GOLGA3Q08378 1498 aa27.05■■□□□ 1.92
PMF1-206ENST00000606952 ADAMTS12P58397 1594 aa27.04■■□□□ 1.92
PMF1-206ENST00000606952 CARMIL1Q5VZK9 1371 aa27.01■■□□□ 1.91
PMF1-206ENST00000606952 MAGI1Q96QZ7 1491 aaPredicted RBP27■■□□□ 1.91
PMF1-206ENST00000606952 RAPGEF2Q9Y4G8 1499 aa27■■□□□ 1.91
PMF1-206ENST00000606952 FHAD1B1AJZ9 1412 aa26.97■■□□□ 1.91
PMF1-206ENST00000606952 SNAPC4Q5SXM2 1469 aa26.94■■□□□ 1.9
PMF1-206ENST00000606952 LOC105371045A0A1W2PR82 267 aa26.89■■□□□ 1.9
PMF1-206ENST00000606952 TNIKQ9UKE5 1360 aa26.86■■□□□ 1.89
PMF1-206ENST00000606952 SYNJ2O15056 1496 aa26.86■■□□□ 1.89
PMF1-206ENST00000606952 GRIN2AQ12879 1464 aa26.79■■□□□ 1.88
PMF1-206ENST00000606952 CTTNBP2Q8WZ74 1663 aa26.79■■□□□ 1.88
PMF1-206ENST00000606952 CHD1O14646 1710 aa26.7■■□□□ 1.87
PMF1-206ENST00000606952 UBTFP17480 764 aaKnown RBP26.69■■□□□ 1.86
PMF1-206ENST00000606952 NUP160Q12769 1436 aa26.67■■□□□ 1.86
PMF1-206ENST00000606952 EHMT2Q96KQ7 1210 aa26.65■■□□□ 1.86
PMF1-206ENST00000606952 CEP170Q5SW79 1584 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms