RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 NISCHQ9Y2I1 1504 aa18.32■□□□□ 0.52
MSH6-211ENST00000606499 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
MSH6-211ENST00000606499 ABCC9O60706 1549 aa15.59■□□□□ 0.09
MSH6-211ENST00000606499 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.05
MSH6-211ENST00000606499 DCAF1Q9Y4B6 1507 aa15.15■□□□□ 0.02
MSH6-211ENST00000606499 NACADO15069 1562 aa15.13■□□□□ 0.01
MSH6-211ENST00000606499 DCAF8L2P0C7V8 631 aa15.13■□□□□ 0.01
MSH6-211ENST00000606499 RB1CC1Q8TDY2 1594 aa15.11■□□□□ 0.01
MSH6-211ENST00000606499 MYO15BQ96JP2 1530 aa15.1■□□□□ 0.01
MSH6-211ENST00000606499 UNC13AQ9UPW8 1703 aa14.88□□□□□ -0.03
MSH6-211ENST00000606499 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
MSH6-211ENST00000606499 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
MSH6-211ENST00000606499 SHROOM4Q9ULL8 1493 aa14.64□□□□□ -0.07
MSH6-211ENST00000606499 PABPN1Q86U42 306 aaKnown RBP eCLIP14.56□□□□□ -0.08
MSH6-211ENST00000606499 AEBP2Q6ZN18 517 aaPredicted RBP14.29□□□□□ -0.12
MSH6-211ENST00000606499 EIF4G1Q04637 1599 aaKnown RBP14.26□□□□□ -0.13
MSH6-211ENST00000606499 CECR2Q9BXF3 1484 aa14.25□□□□□ -0.13
MSH6-211ENST00000606499 SMARCA4P51532 1647 aa14.2□□□□□ -0.14
MSH6-211ENST00000606499 BAZ1AQ9NRL2 1556 aaPredicted RBP14.19□□□□□ -0.14
MSH6-211ENST00000606499 MROH2BQ7Z745 1585 aa14.15□□□□□ -0.14
MSH6-211ENST00000606499 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
MSH6-211ENST00000606499 WIZO95785 1651 aa14.04□□□□□ -0.16
MSH6-211ENST00000606499 RSF1Q96T23 1441 aaPredicted RBP14.04□□□□□ -0.16
MSH6-211ENST00000606499 PEG3Q9GZU2 1588 aa14.03□□□□□ -0.16
MSH6-211ENST00000606499 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
MSH6-211ENST00000606499 SMARCA2P51531 1590 aa14.01□□□□□ -0.17
MSH6-211ENST00000606499 ATAD2BQ9ULI0 1458 aa14□□□□□ -0.17
MSH6-211ENST00000606499 CHIC1Q5VXU3 224 aa13.99□□□□□ -0.17
MSH6-211ENST00000606499 HMGXB3Q12766 1538 aa13.95□□□□□ -0.18
MSH6-211ENST00000606499 NCAPD3P42695 1498 aa13.93□□□□□ -0.18
MSH6-211ENST00000606499 BAZ1BQ9UIG0 1483 aaKnown RBP13.92□□□□□ -0.18
MSH6-211ENST00000606499 TOP2AP11388 1531 aaKnown RBP13.88□□□□□ -0.19
MSH6-211ENST00000606499 SUPT5HO00267 1087 aaKnown RBP13.86□□□□□ -0.19
MSH6-211ENST00000606499 CCDC88BA6NC98 1476 aa13.68□□□□□ -0.22
MSH6-211ENST00000606499 NESP48681 1621 aa13.59□□□□□ -0.23
MSH6-211ENST00000606499 LAMC3Q9Y6N6 1575 aa13.58□□□□□ -0.24
MSH6-211ENST00000606499 PRDM2Q13029 1718 aa13.57□□□□□ -0.24
MSH6-211ENST00000606499 CADPSQ9ULU8 1353 aa13.53□□□□□ -0.24
MSH6-211ENST00000606499 CFTRP13569 1480 aa13.53□□□□□ -0.24
MSH6-211ENST00000606499 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
MSH6-211ENST00000606499 FANCD2Q9BXW9 1451 aa13.42□□□□□ -0.26
MSH6-211ENST00000606499 PDS5BQ9NTI5 1447 aa13.41□□□□□ -0.26
MSH6-211ENST00000606499 ERCC6Q03468 1493 aa13.4□□□□□ -0.26
MSH6-211ENST00000606499 CEP164Q9UPV0 1460 aa13.39□□□□□ -0.27
MSH6-211ENST00000606499 THOC2Q8NI27 1593 aaKnown RBP13.36□□□□□ -0.27
MSH6-211ENST00000606499 ABCC8Q09428 1581 aa13.32□□□□□ -0.28
MSH6-211ENST00000606499 MRC2Q9UBG0 1479 aa13.3□□□□□ -0.28
MSH6-211ENST00000606499 URB2Q14146 1524 aaKnown RBP13.29□□□□□ -0.28
MSH6-211ENST00000606499 WDR62O43379 1518 aa13.28□□□□□ -0.28
MSH6-211ENST00000606499 DNMBPQ6XZF7 1577 aa13.27□□□□□ -0.29
MSH6-211ENST00000606499 SYNJ1O43426 1573 aa13.26□□□□□ -0.29
MSH6-211ENST00000606499 CUX1P39880 1505 aa13.26□□□□□ -0.29
MSH6-211ENST00000606499 BIVM-ERCC5R4GMW8 1640 aa13.24□□□□□ -0.29
MSH6-211ENST00000606499 TOPBP1Q92547 1522 aa13.24□□□□□ -0.29
MSH6-211ENST00000606499 WRNQ14191 1432 aaPredicted RBP eCLIP13.22□□□□□ -0.29
MSH6-211ENST00000606499 TOP2BQ02880 1626 aa13.22□□□□□ -0.29
MSH6-211ENST00000606499 FGD5Q6ZNL6 1462 aa13.16□□□□□ -0.3
MSH6-211ENST00000606499 CUX2O14529 1486 aa13.15□□□□□ -0.3
MSH6-211ENST00000606499 POLA1P09884 1462 aaPredicted RBP13.15□□□□□ -0.3
MSH6-211ENST00000606499 TARBP1Q13395 1621 aaKnown RBP13.13□□□□□ -0.31
MSH6-211ENST00000606499 WDR97A6NE52 1622 aa13.12□□□□□ -0.31
MSH6-211ENST00000606499 RAD54L2Q9Y4B4 1467 aa13.09□□□□□ -0.31
MSH6-211ENST00000606499 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
MSH6-211ENST00000606499 SOGA1O94964 1423 aa13.05□□□□□ -0.32
MSH6-211ENST00000606499 EIF4G3O43432 1585 aaKnown RBP13.04□□□□□ -0.32
MSH6-211ENST00000606499 TRIM41Q8WV44 630 aa13.04□□□□□ -0.32
MSH6-211ENST00000606499 ABCA10Q8WWZ4 1543 aa13.03□□□□□ -0.32
MSH6-211ENST00000606499 ZNF608Q9ULD9 1512 aaPredicted RBP13.03□□□□□ -0.32
MSH6-211ENST00000606499 ABCA5Q8WWZ7 1642 aa13.02□□□□□ -0.33
MSH6-211ENST00000606499 PBRM1Q86U86 1689 aa12.99□□□□□ -0.33
MSH6-211ENST00000606499 TDRD9Q8NDG6 1382 aaKnown RBP12.96□□□□□ -0.33
MSH6-211ENST00000606499 AQRO60306 1485 aaKnown RBP eCLIP12.96□□□□□ -0.34
MSH6-211ENST00000606499 RUSC2Q8N2Y8 1516 aa12.93□□□□□ -0.34
MSH6-211ENST00000606499 GAPVD1Q14C86 1478 aa12.93□□□□□ -0.34
MSH6-211ENST00000606499 KIF27Q86VH2 1401 aa12.91□□□□□ -0.34
MSH6-211ENST00000606499 GRIN2BQ13224 1484 aa12.89□□□□□ -0.35
MSH6-211ENST00000606499 ERICH3Q5RHP9 1530 aa12.88□□□□□ -0.35
MSH6-211ENST00000606499 ADAMTS12P58397 1594 aa12.87□□□□□ -0.35
MSH6-211ENST00000606499 SNAPC4Q5SXM2 1469 aa12.87□□□□□ -0.35
MSH6-211ENST00000606499 CUL7Q14999 1698 aa12.86□□□□□ -0.35
MSH6-211ENST00000606499 CHD1O14646 1710 aa12.85□□□□□ -0.35
MSH6-211ENST00000606499 MAGI1Q96QZ7 1491 aaPredicted RBP12.84□□□□□ -0.35
MSH6-211ENST00000606499 EEA1Q15075 1411 aa12.83□□□□□ -0.36
MSH6-211ENST00000606499 FAM9AQ8IZU1 332 aaPredicted RBP12.81□□□□□ -0.36
MSH6-211ENST00000606499 IGF1RP08069 1367 aa12.81□□□□□ -0.36
MSH6-211ENST00000606499 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
MSH6-211ENST00000606499 FHAD1B1AJZ9 1412 aa12.78□□□□□ -0.36
MSH6-211ENST00000606499 KIF21BO75037 1637 aa12.76□□□□□ -0.37
MSH6-211ENST00000606499 GRIN2AQ12879 1464 aa12.75□□□□□ -0.37
MSH6-211ENST00000606499 PRXQ9BXM0 1461 aa12.75□□□□□ -0.37
MSH6-211ENST00000606499 CARMIL1Q5VZK9 1371 aa12.74□□□□□ -0.37
MSH6-211ENST00000606499 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
MSH6-211ENST00000606499 RAPGEF2Q9Y4G8 1499 aa12.72□□□□□ -0.37
MSH6-211ENST00000606499 FBLN2P98095 1184 aa12.72□□□□□ -0.37
MSH6-211ENST00000606499 CEP170Q5SW79 1584 aa12.72□□□□□ -0.37
MSH6-211ENST00000606499 CTTNBP2Q8WZ74 1663 aa12.7□□□□□ -0.38
MSH6-211ENST00000606499 CHMP7Q8WUX9 453 aaPredicted RBP12.7□□□□□ -0.38
MSH6-211ENST00000606499 GOLGA3Q08378 1498 aa12.66□□□□□ -0.38
MSH6-211ENST00000606499 NUP160Q12769 1436 aa12.66□□□□□ -0.38
MSH6-211ENST00000606499 EHMT2Q96KQ7 1210 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms