RNA–Protein interactions for RNA: ENST00000606394.5

CTSA-212, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-212ENST00000606394 NISCHQ9Y2I1 1504 aa34.04■■■■□ 3.04
CTSA-212ENST00000606394 ABCC9O60706 1549 aa31.09■■■□□ 2.57
CTSA-212ENST00000606394 CCDC180Q9P1Z9 1646 aa30.77■■■□□ 2.52
CTSA-212ENST00000606394 DNAJC5BQ9UF47 199 aa29.55■■■□□ 2.32
CTSA-212ENST00000606394 RB1CC1Q8TDY2 1594 aa29.49■■■□□ 2.31
CTSA-212ENST00000606394 NACADO15069 1562 aa29.22■■■□□ 2.27
CTSA-212ENST00000606394 PABPN1Q86U42 306 aaKnown RBP eCLIP28.86■■■□□ 2.217e-7■■■■□ 25.6
CTSA-212ENST00000606394 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
CTSA-212ENST00000606394 UNC13AQ9UPW8 1703 aa28.74■■■□□ 2.19
CTSA-212ENST00000606394 MYO15BQ96JP2 1530 aa28.74■■■□□ 2.19
CTSA-212ENST00000606394 BICRAQ9NZM4 1560 aa28.61■■■□□ 2.17
CTSA-212ENST00000606394 SHROOM4Q9ULL8 1493 aa28.33■■■□□ 2.13
CTSA-212ENST00000606394 DCAF1Q9Y4B6 1507 aa28.18■■■□□ 2.1
CTSA-212ENST00000606394 ZCCHC6Q5VYS8 1495 aaKnown RBP28.12■■■□□ 2.09
CTSA-212ENST00000606394 CECR2Q9BXF3 1484 aa28.11■■■□□ 2.09
CTSA-212ENST00000606394 CC2D2AQ9P2K1 1620 aa28.1■■■□□ 2.09
CTSA-212ENST00000606394 EIF4G1Q04637 1599 aaKnown RBP27.96■■■□□ 2.07
CTSA-212ENST00000606394 SCRIBQ14160 1630 aa27.9■■■□□ 2.06
CTSA-212ENST00000606394 DNAJC5Q9H3Z4 198 aa27.56■■■□□ 2
CTSA-212ENST00000606394 CUX2O14529 1486 aa27.1■■□□□ 1.93
CTSA-212ENST00000606394 NCAPD3P42695 1498 aa26.98■■□□□ 1.91
CTSA-212ENST00000606394 ERCC6Q03468 1493 aa26.93■■□□□ 1.9
CTSA-212ENST00000606394 ATAD2BQ9ULI0 1458 aa26.78■■□□□ 1.88
CTSA-212ENST00000606394 HMGXB3Q12766 1538 aa26.73■■□□□ 1.87
CTSA-212ENST00000606394 SMARCA2P51531 1590 aa26.72■■□□□ 1.87
CTSA-212ENST00000606394 SMARCA4P51532 1647 aa26.63■■□□□ 1.85
CTSA-212ENST00000606394 NESP48681 1621 aa26.57■■□□□ 1.84
CTSA-212ENST00000606394 BAZ1BQ9UIG0 1483 aaKnown RBP26.5■■□□□ 1.83
CTSA-212ENST00000606394 BAZ1AQ9NRL2 1556 aaPredicted RBP26.47■■□□□ 1.83
CTSA-212ENST00000606394 THOC2Q8NI27 1593 aaKnown RBP26.44■■□□□ 1.82
CTSA-212ENST00000606394 PEG3Q9GZU2 1588 aa26.44■■□□□ 1.82
CTSA-212ENST00000606394 LAMC3Q9Y6N6 1575 aa26.43■■□□□ 1.82
CTSA-212ENST00000606394 PDS5BQ9NTI5 1447 aa26.31■■□□□ 1.8
CTSA-212ENST00000606394 KIF21AQ7Z4S6 1674 aa26.22■■□□□ 1.79
CTSA-212ENST00000606394 MROH2BQ7Z745 1585 aa26.17■■□□□ 1.78
CTSA-212ENST00000606394 CADPSQ9ULU8 1353 aa26.11■■□□□ 1.77
CTSA-212ENST00000606394 MRC2Q9UBG0 1479 aa26.06■■□□□ 1.76
CTSA-212ENST00000606394 TRIM41Q8WV44 630 aa26.05■■□□□ 1.76
CTSA-212ENST00000606394 WDR62O43379 1518 aa26.03■■□□□ 1.76
CTSA-212ENST00000606394 CEP164Q9UPV0 1460 aa25.86■■□□□ 1.73
CTSA-212ENST00000606394 WIZO95785 1651 aa25.82■■□□□ 1.72
CTSA-212ENST00000606394 FANCD2Q9BXW9 1451 aa25.79■■□□□ 1.72
CTSA-212ENST00000606394 OSCARQ8IYS5 282 aa25.77■■□□□ 1.72
CTSA-212ENST00000606394 CFTRP13569 1480 aa25.73■■□□□ 1.71
CTSA-212ENST00000606394 URB2Q14146 1524 aaKnown RBP25.58■■□□□ 1.69
CTSA-212ENST00000606394 TOP2AP11388 1531 aaKnown RBP25.53■■□□□ 1.68
CTSA-212ENST00000606394 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
CTSA-212ENST00000606394 RIMBP3CA6NJZ7 1639 aa25.41■■□□□ 1.66
CTSA-212ENST00000606394 RIMBP3BA6NNM3 1639 aa25.41■■□□□ 1.66
CTSA-212ENST00000606394 RIMBP3Q9UFD9 1639 aa25.41■■□□□ 1.66
CTSA-212ENST00000606394 PRDM2Q13029 1718 aa25.4■■□□□ 1.66
CTSA-212ENST00000606394 IFT140Q96RY7 1462 aa25.39■■□□□ 1.65
CTSA-212ENST00000606394 ARHGEF11O15085 1522 aa25.32■■□□□ 1.64
CTSA-212ENST00000606394 ZNF608Q9ULD9 1512 aaPredicted RBP25.32■■□□□ 1.64
CTSA-212ENST00000606394 ABCC8Q09428 1581 aa25.25■■□□□ 1.63
CTSA-212ENST00000606394 TOPBP1Q92547 1522 aa25.24■■□□□ 1.63
CTSA-212ENST00000606394 CCDC88BA6NC98 1476 aa25.21■■□□□ 1.63
CTSA-212ENST00000606394 EIF4G3O43432 1585 aaKnown RBP25.18■■□□□ 1.62
CTSA-212ENST00000606394 DNMBPQ6XZF7 1577 aa25.14■■□□□ 1.61
CTSA-212ENST00000606394 CYB5RLQ6IPT4 315 aa25.13■■□□□ 1.61
CTSA-212ENST00000606394 TARBP1Q13395 1621 aaKnown RBP25.05■■□□□ 1.6
CTSA-212ENST00000606394 AQRO60306 1485 aaKnown RBP eCLIP25.04■■□□□ 1.69e-10■■■■□ 21
CTSA-212ENST00000606394 CHD1O14646 1710 aa25.04■■□□□ 1.6
CTSA-212ENST00000606394 ARAP1Q96P48 1450 aa25.02■■□□□ 1.6
CTSA-212ENST00000606394 TRHP20396 242 aaPredicted RBP24.99■■□□□ 1.59
CTSA-212ENST00000606394 POLA1P09884 1462 aaPredicted RBP24.96■■□□□ 1.59
CTSA-212ENST00000606394 FBLN2P98095 1184 aa24.95■■□□□ 1.58
CTSA-212ENST00000606394 WDR97A6NE52 1622 aa24.86■■□□□ 1.57
CTSA-212ENST00000606394 SOGA1O94964 1423 aa24.85■■□□□ 1.57
CTSA-212ENST00000606394 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.56
CTSA-212ENST00000606394 TDRD9Q8NDG6 1382 aaKnown RBP24.81■■□□□ 1.56
CTSA-212ENST00000606394 CLASP1Q7Z460 1538 aa24.81■■□□□ 1.56
CTSA-212ENST00000606394 SNAPC4Q5SXM2 1469 aa24.78■■□□□ 1.56
CTSA-212ENST00000606394 MAGI1Q96QZ7 1491 aaPredicted RBP24.77■■□□□ 1.56
CTSA-212ENST00000606394 SYNJ1O43426 1573 aa24.76■■□□□ 1.55
CTSA-212ENST00000606394 CHMP7Q8WUX9 453 aaPredicted RBP24.75■■□□□ 1.55
CTSA-212ENST00000606394 FGD5Q6ZNL6 1462 aa24.72■■□□□ 1.55
CTSA-212ENST00000606394 GRIN2BQ13224 1484 aa24.7■■□□□ 1.55
CTSA-212ENST00000606394 SYNJ2O15056 1496 aa24.68■■□□□ 1.54
CTSA-212ENST00000606394 CUX1P39880 1505 aa24.62■■□□□ 1.53
CTSA-212ENST00000606394 AEBP2Q6ZN18 517 aaPredicted RBP24.61■■□□□ 1.53
CTSA-212ENST00000606394 GAPVD1Q14C86 1478 aa24.57■■□□□ 1.52
CTSA-212ENST00000606394 PBRM1Q86U86 1689 aa24.52■■□□□ 1.52
CTSA-212ENST00000606394 ABCA10Q8WWZ4 1543 aa24.47■■□□□ 1.51
CTSA-212ENST00000606394 ABCA5Q8WWZ7 1642 aa24.44■■□□□ 1.5
CTSA-212ENST00000606394 GRIN2AQ12879 1464 aa24.37■■□□□ 1.49
CTSA-212ENST00000606394 NUP160Q12769 1436 aa24.33■■□□□ 1.49
CTSA-212ENST00000606394 ERCC6L2Q5T890 1561 aa24.31■■□□□ 1.48
CTSA-212ENST00000606394 CEP170Q5SW79 1584 aa24.29■■□□□ 1.48
CTSA-212ENST00000606394 WRNQ14191 1432 aaPredicted RBP eCLIP24.29■■□□□ 1.48
CTSA-212ENST00000606394 ADAMTS12P58397 1594 aa24.28■■□□□ 1.48
CTSA-212ENST00000606394 SHROOM2Q13796 1616 aa24.26■■□□□ 1.47
CTSA-212ENST00000606394 FHAD1B1AJZ9 1412 aa24.24■■□□□ 1.47
CTSA-212ENST00000606394 ERICH3Q5RHP9 1530 aa24.16■■□□□ 1.46
CTSA-212ENST00000606394 TOP2BQ02880 1626 aa24.15■■□□□ 1.46
CTSA-212ENST00000606394 BIVM-ERCC5R4GMW8 1640 aa24.14■■□□□ 1.46
CTSA-212ENST00000606394 KIF13AQ9H1H9 1805 aa24.12■■□□□ 1.45
CTSA-212ENST00000606394 PRG4Q92954 1404 aaPredicted RBP24.09■■□□□ 1.45
CTSA-212ENST00000606394 JPH4Q96JJ6 628 aa24.06■■□□□ 1.44
CTSA-212ENST00000606394 ABCC10Q5T3U5 1492 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms