RNA–Protein interactions for RNA: ENST00000606170.1

PRDM16-209, Transcript of PR/SET domain 16, humanhuman

TSL 4

Gene PRDM16, Length 557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM16-209ENST00000606170 NISCHQ9Y2I1 1504 aa41.29■■■■■ 4.2
PRDM16-209ENST00000606170 CCDC180Q9P1Z9 1646 aa36.8■■■■□ 3.48
PRDM16-209ENST00000606170 ABCC9O60706 1549 aa36.5■■■■□ 3.43
PRDM16-209ENST00000606170 RB1CC1Q8TDY2 1594 aa34.87■■■■□ 3.17
PRDM16-209ENST00000606170 DCAF8L2P0C7V8 631 aa34.84■■■■□ 3.17
PRDM16-209ENST00000606170 NACADO15069 1562 aa34.73■■■■□ 3.15
PRDM16-209ENST00000606170 MYO15BQ96JP2 1530 aa34.35■■■■□ 3.09
PRDM16-209ENST00000606170 ZCCHC6Q5VYS8 1495 aaKnown RBP34.31■■■■□ 3.08
PRDM16-209ENST00000606170 PABPN1Q86U42 306 aaKnown RBP eCLIP34.1■■■■□ 3.05
PRDM16-209ENST00000606170 DCAF1Q9Y4B6 1507 aa34.09■■■■□ 3.05
PRDM16-209ENST00000606170 UNC13AQ9UPW8 1703 aa34.04■■■■□ 3.04
PRDM16-209ENST00000606170 DNAJC5BQ9UF47 199 aa33.85■■■■□ 3.01
PRDM16-209ENST00000606170 BICRAQ9NZM4 1560 aa33.82■■■■□ 3
PRDM16-209ENST00000606170 SCRIBQ14160 1630 aa33.66■■■□□ 2.98
PRDM16-209ENST00000606170 SHROOM4Q9ULL8 1493 aa33.38■■■□□ 2.93
PRDM16-209ENST00000606170 EIF4G1Q04637 1599 aaKnown RBP32.99■■■□□ 2.87
PRDM16-209ENST00000606170 CC2D2AQ9P2K1 1620 aa32.95■■■□□ 2.86
PRDM16-209ENST00000606170 CECR2Q9BXF3 1484 aa32.81■■■□□ 2.84
PRDM16-209ENST00000606170 SMARCA4P51532 1647 aa32.11■■■□□ 2.73
PRDM16-209ENST00000606170 NCAPD3P42695 1498 aa32.07■■■□□ 2.72
PRDM16-209ENST00000606170 ATAD2BQ9ULI0 1458 aa32.05■■■□□ 2.72
PRDM16-209ENST00000606170 BAZ1AQ9NRL2 1556 aaPredicted RBP32.02■■■□□ 2.72
PRDM16-209ENST00000606170 SMARCA2P51531 1590 aa31.97■■■□□ 2.71
PRDM16-209ENST00000606170 HMGXB3Q12766 1538 aa31.85■■■□□ 2.69
PRDM16-209ENST00000606170 MROH2BQ7Z745 1585 aa31.84■■■□□ 2.69
PRDM16-209ENST00000606170 BAZ1BQ9UIG0 1483 aaKnown RBP31.78■■■□□ 2.68
PRDM16-209ENST00000606170 PEG3Q9GZU2 1588 aa31.76■■■□□ 2.67
PRDM16-209ENST00000606170 ERCC6Q03468 1493 aa31.5■■■□□ 2.63
PRDM16-209ENST00000606170 WIZO95785 1651 aa31.48■■■□□ 2.63
PRDM16-209ENST00000606170 NESP48681 1621 aa31.47■■■□□ 2.63
PRDM16-209ENST00000606170 RSF1Q96T23 1441 aaPredicted RBP31.35■■■□□ 2.61
PRDM16-209ENST00000606170 LAMC3Q9Y6N6 1575 aa31.28■■■□□ 2.6
PRDM16-209ENST00000606170 CUX2O14529 1486 aa31.22■■■□□ 2.59
PRDM16-209ENST00000606170 CADPSQ9ULU8 1353 aa31.15■■■□□ 2.58
PRDM16-209ENST00000606170 PDS5BQ9NTI5 1447 aa31.12■■■□□ 2.57
PRDM16-209ENST00000606170 TOP2AP11388 1531 aaKnown RBP31.09■■■□□ 2.57
PRDM16-209ENST00000606170 KIF21AQ7Z4S6 1674 aa31.03■■■□□ 2.56
PRDM16-209ENST00000606170 THOC2Q8NI27 1593 aaKnown RBP31■■■□□ 2.55
PRDM16-209ENST00000606170 CFTRP13569 1480 aa30.86■■■□□ 2.53
PRDM16-209ENST00000606170 MRC2Q9UBG0 1479 aa30.81■■■□□ 2.52
PRDM16-209ENST00000606170 FANCD2Q9BXW9 1451 aa30.8■■■□□ 2.52
PRDM16-209ENST00000606170 CEP164Q9UPV0 1460 aa30.79■■■□□ 2.52
PRDM16-209ENST00000606170 CCDC88BA6NC98 1476 aa30.76■■■□□ 2.52
PRDM16-209ENST00000606170 DNAJC5Q9H3Z4 198 aa30.75■■■□□ 2.51
PRDM16-209ENST00000606170 WDR62O43379 1518 aa30.69■■■□□ 2.5
PRDM16-209ENST00000606170 PRDM2Q13029 1718 aa30.52■■■□□ 2.48
PRDM16-209ENST00000606170 URB2Q14146 1524 aaKnown RBP30.5■■■□□ 2.47
PRDM16-209ENST00000606170 SUPT5HO00267 1087 aaKnown RBP30.4■■■□□ 2.46
PRDM16-209ENST00000606170 TOPBP1Q92547 1522 aa30.25■■■□□ 2.43
PRDM16-209ENST00000606170 ABCC8Q09428 1581 aa30.2■■■□□ 2.43
PRDM16-209ENST00000606170 DNMBPQ6XZF7 1577 aa30.16■■■□□ 2.42
PRDM16-209ENST00000606170 IFT140Q96RY7 1462 aa30.15■■■□□ 2.42
PRDM16-209ENST00000606170 ZNF608Q9ULD9 1512 aaPredicted RBP30.07■■■□□ 2.4
PRDM16-209ENST00000606170 POLA1P09884 1462 aaPredicted RBP29.97■■■□□ 2.39
PRDM16-209ENST00000606170 OSCARQ8IYS5 282 aa29.94■■■□□ 2.38
PRDM16-209ENST00000606170 TARBP1Q13395 1621 aaKnown RBP29.91■■■□□ 2.38
PRDM16-209ENST00000606170 EIF4G3O43432 1585 aaKnown RBP29.9■■■□□ 2.38
PRDM16-209ENST00000606170 CUX1P39880 1505 aa29.89■■■□□ 2.38
PRDM16-209ENST00000606170 RAD54L2Q9Y4B4 1467 aa29.88■■■□□ 2.37
PRDM16-209ENST00000606170 SOGA1O94964 1423 aa29.88■■■□□ 2.37
PRDM16-209ENST00000606170 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.37
PRDM16-209ENST00000606170 FGD5Q6ZNL6 1462 aa29.86■■■□□ 2.37
PRDM16-209ENST00000606170 TDRD9Q8NDG6 1382 aaKnown RBP29.77■■■□□ 2.36
PRDM16-209ENST00000606170 TRIM41Q8WV44 630 aa29.68■■■□□ 2.34
PRDM16-209ENST00000606170 FBLN2P98095 1184 aa29.67■■■□□ 2.34
PRDM16-209ENST00000606170 WDR97A6NE52 1622 aa29.62■■■□□ 2.33
PRDM16-209ENST00000606170 CHD1O14646 1710 aa29.58■■■□□ 2.33
PRDM16-209ENST00000606170 WRNQ14191 1432 aaPredicted RBP eCLIP29.58■■■□□ 2.33
PRDM16-209ENST00000606170 SNAPC4Q5SXM2 1469 aa29.57■■■□□ 2.32
PRDM16-209ENST00000606170 GRIN2BQ13224 1484 aa29.54■■■□□ 2.32
PRDM16-209ENST00000606170 ABCA10Q8WWZ4 1543 aa29.51■■■□□ 2.32
PRDM16-209ENST00000606170 GAPVD1Q14C86 1478 aa29.51■■■□□ 2.31
PRDM16-209ENST00000606170 TOP2BQ02880 1626 aa29.5■■■□□ 2.31
PRDM16-209ENST00000606170 SYNJ1O43426 1573 aa29.5■■■□□ 2.31
PRDM16-209ENST00000606170 CHMP7Q8WUX9 453 aaPredicted RBP29.49■■■□□ 2.31
PRDM16-209ENST00000606170 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
PRDM16-209ENST00000606170 MAGI1Q96QZ7 1491 aaPredicted RBP29.48■■■□□ 2.31
PRDM16-209ENST00000606170 RIMBP3CA6NJZ7 1639 aa29.45■■■□□ 2.3
PRDM16-209ENST00000606170 RIMBP3BA6NNM3 1639 aa29.45■■■□□ 2.3
PRDM16-209ENST00000606170 RIMBP3Q9UFD9 1639 aa29.45■■■□□ 2.3
PRDM16-209ENST00000606170 PBRM1Q86U86 1689 aa29.42■■■□□ 2.3
PRDM16-209ENST00000606170 ARHGEF11O15085 1522 aa29.41■■■□□ 2.3
PRDM16-209ENST00000606170 ABCA5Q8WWZ7 1642 aa29.41■■■□□ 2.3
PRDM16-209ENST00000606170 SYNJ2O15056 1496 aa29.39■■■□□ 2.3
PRDM16-209ENST00000606170 CYB5RLQ6IPT4 315 aa29.25■■■□□ 2.27
PRDM16-209ENST00000606170 CLASP1Q7Z460 1538 aa29.25■■■□□ 2.27
PRDM16-209ENST00000606170 ADAMTS12P58397 1594 aa29.18■■■□□ 2.26
PRDM16-209ENST00000606170 GRIN2AQ12879 1464 aa29.16■■■□□ 2.26
PRDM16-209ENST00000606170 ARAP1Q96P48 1450 aa29.16■■■□□ 2.26
PRDM16-209ENST00000606170 ERICH3Q5RHP9 1530 aa29.15■■■□□ 2.26
PRDM16-209ENST00000606170 FHAD1B1AJZ9 1412 aa29.14■■■□□ 2.26
PRDM16-209ENST00000606170 NUP160Q12769 1436 aa29.03■■■□□ 2.24
PRDM16-209ENST00000606170 CEP170Q5SW79 1584 aa29.02■■■□□ 2.24
PRDM16-209ENST00000606170 KIF27Q86VH2 1401 aa28.99■■■□□ 2.23
PRDM16-209ENST00000606170 IGF1RP08069 1367 aa28.92■■■□□ 2.22
PRDM16-209ENST00000606170 ERCC6L2Q5T890 1561 aa28.86■■■□□ 2.21
PRDM16-209ENST00000606170 TRHP20396 242 aaPredicted RBP28.82■■■□□ 2.2
PRDM16-209ENST00000606170 CUL7Q14999 1698 aa28.8■■■□□ 2.2
PRDM16-209ENST00000606170 SHROOM2Q13796 1616 aa28.8■■■□□ 2.2
PRDM16-209ENST00000606170 JPH4Q96JJ6 628 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms