RNA–Protein interactions for RNA: ENST00000606066.1

CTSA-211, Transcript of cathepsin A, humanhuman

TSL 5

Gene CTSA, Length 603 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-211ENST00000606066 NISCHQ9Y2I1 1504 aa34.09■■■■□ 3.05
CTSA-211ENST00000606066 ABCC9O60706 1549 aa30.27■■■□□ 2.44
CTSA-211ENST00000606066 CCDC180Q9P1Z9 1646 aa30.15■■■□□ 2.42
CTSA-211ENST00000606066 DNAJC5BQ9UF47 199 aa28.79■■■□□ 2.2
CTSA-211ENST00000606066 RB1CC1Q8TDY2 1594 aa28.67■■■□□ 2.18
CTSA-211ENST00000606066 DCAF8L2P0C7V8 631 aa28.51■■■□□ 2.15
CTSA-211ENST00000606066 NACADO15069 1562 aa28.48■■■□□ 2.15
CTSA-211ENST00000606066 ZCCHC6Q5VYS8 1495 aaKnown RBP28.42■■■□□ 2.14
CTSA-211ENST00000606066 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
CTSA-211ENST00000606066 PABPN1Q86U42 306 aaKnown RBP eCLIP28.27■■■□□ 2.12
CTSA-211ENST00000606066 DCAF1Q9Y4B6 1507 aa28.23■■■□□ 2.11
CTSA-211ENST00000606066 BICRAQ9NZM4 1560 aa27.84■■■□□ 2.05
CTSA-211ENST00000606066 UNC13AQ9UPW8 1703 aa27.73■■■□□ 2.03
CTSA-211ENST00000606066 SHROOM4Q9ULL8 1493 aa27.56■■■□□ 2
CTSA-211ENST00000606066 SCRIBQ14160 1630 aa27.54■■■□□ 2
CTSA-211ENST00000606066 CECR2Q9BXF3 1484 aa27.34■■□□□ 1.97
CTSA-211ENST00000606066 CC2D2AQ9P2K1 1620 aa27.26■■□□□ 1.95
CTSA-211ENST00000606066 EIF4G1Q04637 1599 aaKnown RBP27.18■■□□□ 1.94
CTSA-211ENST00000606066 DNAJC5Q9H3Z4 198 aa26.67■■□□□ 1.86
CTSA-211ENST00000606066 BAZ1AQ9NRL2 1556 aaPredicted RBP26.42■■□□□ 1.82
CTSA-211ENST00000606066 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
CTSA-211ENST00000606066 SMARCA4P51532 1647 aa26.36■■□□□ 1.81
CTSA-211ENST00000606066 MROH2BQ7Z745 1585 aa26.24■■□□□ 1.79
CTSA-211ENST00000606066 CUX2O14529 1486 aa26.24■■□□□ 1.79
CTSA-211ENST00000606066 ATAD2BQ9ULI0 1458 aa26.23■■□□□ 1.79
CTSA-211ENST00000606066 SMARCA2P51531 1590 aa26.2■■□□□ 1.79
CTSA-211ENST00000606066 ERCC6Q03468 1493 aa26.15■■□□□ 1.78
CTSA-211ENST00000606066 PEG3Q9GZU2 1588 aa26.12■■□□□ 1.77
CTSA-211ENST00000606066 RSF1Q96T23 1441 aaPredicted RBP26.06■■□□□ 1.76
CTSA-211ENST00000606066 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
CTSA-211ENST00000606066 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
CTSA-211ENST00000606066 WIZO95785 1651 aa25.93■■□□□ 1.74
CTSA-211ENST00000606066 NESP48681 1621 aa25.92■■□□□ 1.74
CTSA-211ENST00000606066 TOP2AP11388 1531 aaKnown RBP25.73■■□□□ 1.71
CTSA-211ENST00000606066 PDS5BQ9NTI5 1447 aa25.7■■□□□ 1.7
CTSA-211ENST00000606066 LAMC3Q9Y6N6 1575 aa25.69■■□□□ 1.7
CTSA-211ENST00000606066 CADPSQ9ULU8 1353 aa25.61■■□□□ 1.69
CTSA-211ENST00000606066 SUPT5HO00267 1087 aaKnown RBP25.61■■□□□ 1.69
CTSA-211ENST00000606066 THOC2Q8NI27 1593 aaKnown RBP25.6■■□□□ 1.69
CTSA-211ENST00000606066 CCDC88BA6NC98 1476 aa25.44■■□□□ 1.66
CTSA-211ENST00000606066 MRC2Q9UBG0 1479 aa25.39■■□□□ 1.65
CTSA-211ENST00000606066 KIF21AQ7Z4S6 1674 aa25.36■■□□□ 1.65
CTSA-211ENST00000606066 CFTRP13569 1480 aa25.33■■□□□ 1.65
CTSA-211ENST00000606066 WDR62O43379 1518 aa25.3■■□□□ 1.64
CTSA-211ENST00000606066 TRIM41Q8WV44 630 aa25.25■■□□□ 1.63
CTSA-211ENST00000606066 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
CTSA-211ENST00000606066 FANCD2Q9BXW9 1451 aa25.21■■□□□ 1.63
CTSA-211ENST00000606066 OSCARQ8IYS5 282 aa25.16■■□□□ 1.62
CTSA-211ENST00000606066 PRDM2Q13029 1718 aa25■■□□□ 1.59
CTSA-211ENST00000606066 URB2Q14146 1524 aaKnown RBP24.99■■□□□ 1.59
CTSA-211ENST00000606066 ABCC8Q09428 1581 aa24.83■■□□□ 1.57
CTSA-211ENST00000606066 IFT140Q96RY7 1462 aa24.8■■□□□ 1.56
CTSA-211ENST00000606066 TOPBP1Q92547 1522 aa24.74■■□□□ 1.55
CTSA-211ENST00000606066 ZNF608Q9ULD9 1512 aaPredicted RBP24.73■■□□□ 1.55
CTSA-211ENST00000606066 DNMBPQ6XZF7 1577 aa24.72■■□□□ 1.55
CTSA-211ENST00000606066 CUX1P39880 1505 aa24.61■■□□□ 1.53
CTSA-211ENST00000606066 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
CTSA-211ENST00000606066 RIMBP3CA6NJZ7 1639 aa24.55■■□□□ 1.52
CTSA-211ENST00000606066 RIMBP3BA6NNM3 1639 aa24.55■■□□□ 1.52
CTSA-211ENST00000606066 RIMBP3Q9UFD9 1639 aa24.55■■□□□ 1.52
CTSA-211ENST00000606066 POLA1P09884 1462 aaPredicted RBP24.55■■□□□ 1.52
CTSA-211ENST00000606066 ARHGEF11O15085 1522 aa24.54■■□□□ 1.52
CTSA-211ENST00000606066 CYB5RLQ6IPT4 315 aa24.53■■□□□ 1.52
CTSA-211ENST00000606066 AQRO60306 1485 aaKnown RBP eCLIP24.52■■□□□ 1.529e-10■■■■□ 21
CTSA-211ENST00000606066 FGD5Q6ZNL6 1462 aa24.52■■□□□ 1.52
CTSA-211ENST00000606066 SOGA1O94964 1423 aa24.51■■□□□ 1.51
CTSA-211ENST00000606066 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
CTSA-211ENST00000606066 FBLN2P98095 1184 aa24.44■■□□□ 1.5
CTSA-211ENST00000606066 RAD54L2Q9Y4B4 1467 aa24.44■■□□□ 1.5
CTSA-211ENST00000606066 SYNJ1O43426 1573 aa24.43■■□□□ 1.5
CTSA-211ENST00000606066 EIF4G3O43432 1585 aaKnown RBP24.43■■□□□ 1.5
CTSA-211ENST00000606066 BIVM-ERCC5R4GMW8 1640 aa24.42■■□□□ 1.5
CTSA-211ENST00000606066 TARBP1Q13395 1621 aaKnown RBP24.41■■□□□ 1.5
CTSA-211ENST00000606066 TDRD9Q8NDG6 1382 aaKnown RBP24.37■■□□□ 1.49
CTSA-211ENST00000606066 ABCA10Q8WWZ4 1543 aa24.3■■□□□ 1.48
CTSA-211ENST00000606066 ARAP1Q96P48 1450 aa24.3■■□□□ 1.48
CTSA-211ENST00000606066 TRHP20396 242 aaPredicted RBP24.29■■□□□ 1.48
CTSA-211ENST00000606066 CHMP7Q8WUX9 453 aaPredicted RBP24.29■■□□□ 1.48
CTSA-211ENST00000606066 WDR97A6NE52 1622 aa24.28■■□□□ 1.48
CTSA-211ENST00000606066 GAPVD1Q14C86 1478 aa24.2■■□□□ 1.47
CTSA-211ENST00000606066 SNAPC4Q5SXM2 1469 aa24.19■■□□□ 1.46
CTSA-211ENST00000606066 GRIN2BQ13224 1484 aa24.18■■□□□ 1.46
CTSA-211ENST00000606066 CHD1O14646 1710 aa24.18■■□□□ 1.46
CTSA-211ENST00000606066 MAGI1Q96QZ7 1491 aaPredicted RBP24.17■■□□□ 1.46
CTSA-211ENST00000606066 ABCA5Q8WWZ7 1642 aa24.13■■□□□ 1.45
CTSA-211ENST00000606066 CLASP1Q7Z460 1538 aa24.11■■□□□ 1.45
CTSA-211ENST00000606066 SYNJ2O15056 1496 aa24.1■■□□□ 1.45
CTSA-211ENST00000606066 KIF27Q86VH2 1401 aa24.1■■□□□ 1.45
CTSA-211ENST00000606066 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
CTSA-211ENST00000606066 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
CTSA-211ENST00000606066 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
CTSA-211ENST00000606066 FHAD1B1AJZ9 1412 aa23.95■■□□□ 1.42
CTSA-211ENST00000606066 IGF1RP08069 1367 aa23.95■■□□□ 1.42
CTSA-211ENST00000606066 ADAMTS12P58397 1594 aa23.9■■□□□ 1.42
CTSA-211ENST00000606066 GRIN2AQ12879 1464 aa23.85■■□□□ 1.41
CTSA-211ENST00000606066 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
CTSA-211ENST00000606066 CARMIL1Q5VZK9 1371 aa23.82■■□□□ 1.4
CTSA-211ENST00000606066 CUL7Q14999 1698 aa23.81■■□□□ 1.4
CTSA-211ENST00000606066 NUP160Q12769 1436 aa23.8■■□□□ 1.4
CTSA-211ENST00000606066 EEA1Q15075 1411 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms