RNA–Protein interactions for RNA: ENST00000605142.1

UBE3B-213, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 2

Gene UBE3B, Length 1,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-213ENST00000605142 NISCHQ9Y2I1 1504 aa30.17■■■□□ 2.42
UBE3B-213ENST00000605142 ABCC9O60706 1549 aa27.47■■□□□ 1.99
UBE3B-213ENST00000605142 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
UBE3B-213ENST00000605142 DNAJC5BQ9UF47 199 aa26.23■■□□□ 1.79
UBE3B-213ENST00000605142 RB1CC1Q8TDY2 1594 aa26.05■■□□□ 1.76
UBE3B-213ENST00000605142 NACADO15069 1562 aa25.79■■□□□ 1.72
UBE3B-213ENST00000605142 PABPN1Q86U42 306 aaKnown RBP eCLIP25.48■■□□□ 1.67
UBE3B-213ENST00000605142 UNC13AQ9UPW8 1703 aa25.38■■□□□ 1.65
UBE3B-213ENST00000605142 MYO15BQ96JP2 1530 aa25.37■■□□□ 1.65
UBE3B-213ENST00000605142 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
UBE3B-213ENST00000605142 BICRAQ9NZM4 1560 aa25.28■■□□□ 1.64
UBE3B-213ENST00000605142 SHROOM4Q9ULL8 1493 aa25.05■■□□□ 1.6
UBE3B-213ENST00000605142 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
UBE3B-213ENST00000605142 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
UBE3B-213ENST00000605142 CECR2Q9BXF3 1484 aa24.87■■□□□ 1.57
UBE3B-213ENST00000605142 CC2D2AQ9P2K1 1620 aa24.85■■□□□ 1.57
UBE3B-213ENST00000605142 EIF4G1Q04637 1599 aaKnown RBP24.7■■□□□ 1.54
UBE3B-213ENST00000605142 SCRIBQ14160 1630 aa24.65■■□□□ 1.54
UBE3B-213ENST00000605142 DNAJC5Q9H3Z4 198 aa24.54■■□□□ 1.52
UBE3B-213ENST00000605142 CUX2O14529 1486 aa24.01■■□□□ 1.43
UBE3B-213ENST00000605142 NCAPD3P42695 1498 aa23.83■■□□□ 1.41
UBE3B-213ENST00000605142 ERCC6Q03468 1493 aa23.79■■□□□ 1.4
UBE3B-213ENST00000605142 ATAD2BQ9ULI0 1458 aa23.63■■□□□ 1.37
UBE3B-213ENST00000605142 HMGXB3Q12766 1538 aa23.59■■□□□ 1.37
UBE3B-213ENST00000605142 SMARCA2P51531 1590 aa23.57■■□□□ 1.36
UBE3B-213ENST00000605142 SMARCA4P51532 1647 aa23.53■■□□□ 1.36
UBE3B-213ENST00000605142 NESP48681 1621 aa23.46■■□□□ 1.35
UBE3B-213ENST00000605142 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
UBE3B-213ENST00000605142 BAZ1AQ9NRL2 1556 aaPredicted RBP23.37■■□□□ 1.33
UBE3B-213ENST00000605142 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
UBE3B-213ENST00000605142 LAMC3Q9Y6N6 1575 aa23.34■■□□□ 1.33
UBE3B-213ENST00000605142 PEG3Q9GZU2 1588 aa23.33■■□□□ 1.33
UBE3B-213ENST00000605142 MROH2BQ7Z745 1585 aa23.28■■□□□ 1.32
UBE3B-213ENST00000605142 PDS5BQ9NTI5 1447 aa23.23■■□□□ 1.31
UBE3B-213ENST00000605142 KIF21AQ7Z4S6 1674 aa23.16■■□□□ 1.3
UBE3B-213ENST00000605142 TRIM41Q8WV44 630 aa23.09■■□□□ 1.29
UBE3B-213ENST00000605142 CADPSQ9ULU8 1353 aa23.05■■□□□ 1.28
UBE3B-213ENST00000605142 MRC2Q9UBG0 1479 aa23.01■■□□□ 1.27
UBE3B-213ENST00000605142 WIZO95785 1651 aa23■■□□□ 1.27
UBE3B-213ENST00000605142 WDR62O43379 1518 aa22.99■■□□□ 1.27
UBE3B-213ENST00000605142 OSCARQ8IYS5 282 aa22.82■■□□□ 1.24
UBE3B-213ENST00000605142 CEP164Q9UPV0 1460 aa22.81■■□□□ 1.24
UBE3B-213ENST00000605142 RSF1Q96T23 1441 aaPredicted RBP22.79■■□□□ 1.24
UBE3B-213ENST00000605142 FANCD2Q9BXW9 1451 aa22.74■■□□□ 1.23
UBE3B-213ENST00000605142 CFTRP13569 1480 aa22.7■■□□□ 1.22
UBE3B-213ENST00000605142 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
UBE3B-213ENST00000605142 URB2Q14146 1524 aaKnown RBP22.57■■□□□ 1.2
UBE3B-213ENST00000605142 RIMBP3CA6NJZ7 1639 aa22.49■■□□□ 1.19
UBE3B-213ENST00000605142 RIMBP3BA6NNM3 1639 aa22.49■■□□□ 1.19
UBE3B-213ENST00000605142 RIMBP3Q9UFD9 1639 aa22.49■■□□□ 1.19
UBE3B-213ENST00000605142 CCDC88BA6NC98 1476 aa22.43■■□□□ 1.18
UBE3B-213ENST00000605142 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
UBE3B-213ENST00000605142 ARHGEF11O15085 1522 aa22.41■■□□□ 1.18
UBE3B-213ENST00000605142 PRDM2Q13029 1718 aa22.4■■□□□ 1.18
UBE3B-213ENST00000605142 ZNF608Q9ULD9 1512 aaPredicted RBP22.34■■□□□ 1.17
UBE3B-213ENST00000605142 ABCC8Q09428 1581 aa22.28■■□□□ 1.16
UBE3B-213ENST00000605142 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
UBE3B-213ENST00000605142 CYB5RLQ6IPT4 315 aa22.23■■□□□ 1.15
UBE3B-213ENST00000605142 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
UBE3B-213ENST00000605142 DNMBPQ6XZF7 1577 aa22.15■■□□□ 1.14
UBE3B-213ENST00000605142 ARAP1Q96P48 1450 aa22.14■■□□□ 1.13
UBE3B-213ENST00000605142 TARBP1Q13395 1621 aaKnown RBP22.11■■□□□ 1.13
UBE3B-213ENST00000605142 TRHP20396 242 aaPredicted RBP22.11■■□□□ 1.13
UBE3B-213ENST00000605142 CHD1O14646 1710 aa22.11■■□□□ 1.13
UBE3B-213ENST00000605142 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.13
UBE3B-213ENST00000605142 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
UBE3B-213ENST00000605142 FBLN2P98095 1184 aa21.99■■□□□ 1.11
UBE3B-213ENST00000605142 WDR97A6NE52 1622 aa21.95■■□□□ 1.1
UBE3B-213ENST00000605142 CLASP1Q7Z460 1538 aa21.92■■□□□ 1.1
UBE3B-213ENST00000605142 RAD54L2Q9Y4B4 1467 aa21.92■■□□□ 1.1
UBE3B-213ENST00000605142 SOGA1O94964 1423 aa21.89■■□□□ 1.1
UBE3B-213ENST00000605142 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
UBE3B-213ENST00000605142 CUX1P39880 1505 aa21.86■■□□□ 1.09
UBE3B-213ENST00000605142 MAGI1Q96QZ7 1491 aaPredicted RBP21.86■■□□□ 1.09
UBE3B-213ENST00000605142 SYNJ1O43426 1573 aa21.86■■□□□ 1.09
UBE3B-213ENST00000605142 AEBP2Q6ZN18 517 aaPredicted RBP21.85■■□□□ 1.09
UBE3B-213ENST00000605142 SNAPC4Q5SXM2 1469 aa21.84■■□□□ 1.09
UBE3B-213ENST00000605142 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
UBE3B-213ENST00000605142 CHMP7Q8WUX9 453 aaPredicted RBP21.84■■□□□ 1.09
UBE3B-213ENST00000605142 GRIN2BQ13224 1484 aa21.78■■□□□ 1.08
UBE3B-213ENST00000605142 SYNJ2O15056 1496 aa21.77■■□□□ 1.08
UBE3B-213ENST00000605142 SUPT5HO00267 1087 aaKnown RBP21.75■■□□□ 1.07
UBE3B-213ENST00000605142 GAPVD1Q14C86 1478 aa21.71■■□□□ 1.07
UBE3B-213ENST00000605142 ABCA10Q8WWZ4 1543 aa21.6■■□□□ 1.05
UBE3B-213ENST00000605142 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
UBE3B-213ENST00000605142 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.05
UBE3B-213ENST00000605142 BIVM-ERCC5R4GMW8 1640 aa21.51■■□□□ 1.03
UBE3B-213ENST00000605142 GRIN2AQ12879 1464 aa21.49■■□□□ 1.03
UBE3B-213ENST00000605142 TOP2BQ02880 1626 aa21.48■■□□□ 1.03
UBE3B-213ENST00000605142 NUP160Q12769 1436 aa21.47■■□□□ 1.03
UBE3B-213ENST00000605142 ERCC6L2Q5T890 1561 aa21.45■■□□□ 1.02
UBE3B-213ENST00000605142 WRNQ14191 1432 aaPredicted RBP eCLIP21.45■■□□□ 1.02
UBE3B-213ENST00000605142 CEP170Q5SW79 1584 aa21.44■■□□□ 1.02
UBE3B-213ENST00000605142 SHROOM2Q13796 1616 aa21.42■■□□□ 1.02
UBE3B-213ENST00000605142 ADAMTS12P58397 1594 aa21.4■■□□□ 1.02
UBE3B-213ENST00000605142 FHAD1B1AJZ9 1412 aa21.36■■□□□ 1.01
UBE3B-213ENST00000605142 KIF13AQ9H1H9 1805 aa21.35■■□□□ 1.01
UBE3B-213ENST00000605142 ERICH3Q5RHP9 1530 aa21.29■■□□□ 1
UBE3B-213ENST00000605142 PRG4Q92954 1404 aaPredicted RBP21.25■□□□□ 0.99
UBE3B-213ENST00000605142 ABCC10Q5T3U5 1492 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms