RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 NISCHQ9Y2I1 1504 aa35.11■■■■□ 3.21
TUBE1-208ENST00000604743 CCDC180Q9P1Z9 1646 aa31.27■■■□□ 2.6
TUBE1-208ENST00000604743 ABCC9O60706 1549 aa30.82■■■□□ 2.52
TUBE1-208ENST00000604743 DCAF8L2P0C7V8 631 aa29.58■■■□□ 2.33
TUBE1-208ENST00000604743 RB1CC1Q8TDY2 1594 aa29.52■■■□□ 2.32
TUBE1-208ENST00000604743 NACADO15069 1562 aa29.42■■■□□ 2.3
TUBE1-208ENST00000604743 ZCCHC6Q5VYS8 1495 aaKnown RBP29.2■■■□□ 2.26
TUBE1-208ENST00000604743 MYO15BQ96JP2 1530 aa29.12■■■□□ 2.25
TUBE1-208ENST00000604743 DCAF1Q9Y4B6 1507 aa28.97■■■□□ 2.23
TUBE1-208ENST00000604743 UNC13AQ9UPW8 1703 aa28.93■■■□□ 2.22
TUBE1-208ENST00000604743 PABPN1Q86U42 306 aaKnown RBP eCLIP28.81■■■□□ 2.2
TUBE1-208ENST00000604743 BICRAQ9NZM4 1560 aa28.62■■■□□ 2.17
TUBE1-208ENST00000604743 SCRIBQ14160 1630 aa28.61■■■□□ 2.17
TUBE1-208ENST00000604743 DNAJC5BQ9UF47 199 aa28.39■■■□□ 2.14
TUBE1-208ENST00000604743 SHROOM4Q9ULL8 1493 aa28.2■■■□□ 2.1
TUBE1-208ENST00000604743 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
TUBE1-208ENST00000604743 CC2D2AQ9P2K1 1620 aa27.84■■■□□ 2.05
TUBE1-208ENST00000604743 CECR2Q9BXF3 1484 aa27.66■■■□□ 2.02
TUBE1-208ENST00000604743 SMARCA4P51532 1647 aa27.3■■□□□ 1.96
TUBE1-208ENST00000604743 BAZ1AQ9NRL2 1556 aaPredicted RBP27.22■■□□□ 1.95
TUBE1-208ENST00000604743 ATAD2BQ9ULI0 1458 aa27.16■■□□□ 1.94
TUBE1-208ENST00000604743 NCAPD3P42695 1498 aa27.13■■□□□ 1.93
TUBE1-208ENST00000604743 SMARCA2P51531 1590 aa27.11■■□□□ 1.93
TUBE1-208ENST00000604743 MROH2BQ7Z745 1585 aa27.09■■□□□ 1.93
TUBE1-208ENST00000604743 HMGXB3Q12766 1538 aa26.99■■□□□ 1.91
TUBE1-208ENST00000604743 BAZ1BQ9UIG0 1483 aaKnown RBP26.96■■□□□ 1.91
TUBE1-208ENST00000604743 PEG3Q9GZU2 1588 aa26.96■■□□□ 1.91
TUBE1-208ENST00000604743 WIZO95785 1651 aa26.84■■□□□ 1.89
TUBE1-208ENST00000604743 RSF1Q96T23 1441 aaPredicted RBP26.71■■□□□ 1.87
TUBE1-208ENST00000604743 NESP48681 1621 aa26.62■■□□□ 1.85
TUBE1-208ENST00000604743 ERCC6Q03468 1493 aa26.56■■□□□ 1.84
TUBE1-208ENST00000604743 LAMC3Q9Y6N6 1575 aa26.47■■□□□ 1.83
TUBE1-208ENST00000604743 TOP2AP11388 1531 aaKnown RBP26.47■■□□□ 1.83
TUBE1-208ENST00000604743 CADPSQ9ULU8 1353 aa26.37■■□□□ 1.81
TUBE1-208ENST00000604743 KIF21AQ7Z4S6 1674 aa26.32■■□□□ 1.8
TUBE1-208ENST00000604743 PDS5BQ9NTI5 1447 aa26.31■■□□□ 1.8
TUBE1-208ENST00000604743 CUX2O14529 1486 aa26.25■■□□□ 1.79
TUBE1-208ENST00000604743 THOC2Q8NI27 1593 aaKnown RBP26.2■■□□□ 1.78
TUBE1-208ENST00000604743 CCDC88BA6NC98 1476 aa26.19■■□□□ 1.78
TUBE1-208ENST00000604743 CFTRP13569 1480 aa26.16■■□□□ 1.78
TUBE1-208ENST00000604743 FANCD2Q9BXW9 1451 aa26.09■■□□□ 1.77
TUBE1-208ENST00000604743 CEP164Q9UPV0 1460 aa26.07■■□□□ 1.76
TUBE1-208ENST00000604743 SUPT5HO00267 1087 aaKnown RBP26.07■■□□□ 1.76
TUBE1-208ENST00000604743 MRC2Q9UBG0 1479 aa26.05■■□□□ 1.76
TUBE1-208ENST00000604743 PRDM2Q13029 1718 aa26.03■■□□□ 1.76
TUBE1-208ENST00000604743 WDR62O43379 1518 aa25.94■■□□□ 1.74
TUBE1-208ENST00000604743 URB2Q14146 1524 aaKnown RBP25.83■■□□□ 1.73
TUBE1-208ENST00000604743 TOPBP1Q92547 1522 aa25.65■■□□□ 1.7
TUBE1-208ENST00000604743 DNAJC5Q9H3Z4 198 aa25.64■■□□□ 1.7
TUBE1-208ENST00000604743 ABCC8Q09428 1581 aa25.61■■□□□ 1.69
TUBE1-208ENST00000604743 DNMBPQ6XZF7 1577 aa25.61■■□□□ 1.69
TUBE1-208ENST00000604743 IFT140Q96RY7 1462 aa25.51■■□□□ 1.67
TUBE1-208ENST00000604743 ZNF608Q9ULD9 1512 aaPredicted RBP25.45■■□□□ 1.66
TUBE1-208ENST00000604743 POLA1P09884 1462 aaPredicted RBP25.42■■□□□ 1.66
TUBE1-208ENST00000604743 CUX1P39880 1505 aa25.42■■□□□ 1.66
TUBE1-208ENST00000604743 TARBP1Q13395 1621 aaKnown RBP25.37■■□□□ 1.65
TUBE1-208ENST00000604743 FGD5Q6ZNL6 1462 aa25.36■■□□□ 1.65
TUBE1-208ENST00000604743 RAD54L2Q9Y4B4 1467 aa25.36■■□□□ 1.65
TUBE1-208ENST00000604743 SOGA1O94964 1423 aa25.34■■□□□ 1.65
TUBE1-208ENST00000604743 EIF4G3O43432 1585 aaKnown RBP25.33■■□□□ 1.65
TUBE1-208ENST00000604743 AQRO60306 1485 aaKnown RBP eCLIP25.3■■□□□ 1.64
TUBE1-208ENST00000604743 TDRD9Q8NDG6 1382 aaKnown RBP25.24■■□□□ 1.63
TUBE1-208ENST00000604743 OSCARQ8IYS5 282 aa25.21■■□□□ 1.63
TUBE1-208ENST00000604743 WRNQ14191 1432 aaPredicted RBP eCLIP25.2■■□□□ 1.63
TUBE1-208ENST00000604743 SYNJ1O43426 1573 aa25.17■■□□□ 1.62
TUBE1-208ENST00000604743 TOP2BQ02880 1626 aa25.15■■□□□ 1.62
TUBE1-208ENST00000604743 BIVM-ERCC5R4GMW8 1640 aa25.15■■□□□ 1.62
TUBE1-208ENST00000604743 WDR97A6NE52 1622 aa25.14■■□□□ 1.61
TUBE1-208ENST00000604743 CHD1O14646 1710 aa25.09■■□□□ 1.61
TUBE1-208ENST00000604743 FBLN2P98095 1184 aa25.09■■□□□ 1.61
TUBE1-208ENST00000604743 ABCA10Q8WWZ4 1543 aa25.07■■□□□ 1.6
TUBE1-208ENST00000604743 SNAPC4Q5SXM2 1469 aa25.05■■□□□ 1.6
TUBE1-208ENST00000604743 PBRM1Q86U86 1689 aa25.04■■□□□ 1.6
TUBE1-208ENST00000604743 GRIN2BQ13224 1484 aa25.03■■□□□ 1.6
TUBE1-208ENST00000604743 GAPVD1Q14C86 1478 aa25.03■■□□□ 1.6
TUBE1-208ENST00000604743 ABCA5Q8WWZ7 1642 aa24.99■■□□□ 1.59
TUBE1-208ENST00000604743 MAGI1Q96QZ7 1491 aaPredicted RBP24.96■■□□□ 1.59
TUBE1-208ENST00000604743 CHMP7Q8WUX9 453 aaPredicted RBP24.95■■□□□ 1.58
TUBE1-208ENST00000604743 SYNJ2O15056 1496 aa24.88■■□□□ 1.57
TUBE1-208ENST00000604743 TRIM41Q8WV44 630 aa24.87■■□□□ 1.57
TUBE1-208ENST00000604743 RIMBP3CA6NJZ7 1639 aa24.83■■□□□ 1.56
TUBE1-208ENST00000604743 RIMBP3BA6NNM3 1639 aa24.83■■□□□ 1.56
TUBE1-208ENST00000604743 RIMBP3Q9UFD9 1639 aa24.83■■□□□ 1.56
TUBE1-208ENST00000604743 ADAMTS12P58397 1594 aa24.78■■□□□ 1.56
TUBE1-208ENST00000604743 ARHGEF11O15085 1522 aa24.77■■□□□ 1.56
TUBE1-208ENST00000604743 ERICH3Q5RHP9 1530 aa24.76■■□□□ 1.55
TUBE1-208ENST00000604743 CLASP1Q7Z460 1538 aa24.73■■□□□ 1.55
TUBE1-208ENST00000604743 FHAD1B1AJZ9 1412 aa24.72■■□□□ 1.55
TUBE1-208ENST00000604743 GRIN2AQ12879 1464 aa24.71■■□□□ 1.55
TUBE1-208ENST00000604743 KIF27Q86VH2 1401 aa24.69■■□□□ 1.54
TUBE1-208ENST00000604743 CYB5RLQ6IPT4 315 aa24.62■■□□□ 1.53
TUBE1-208ENST00000604743 CEP170Q5SW79 1584 aa24.62■■□□□ 1.53
TUBE1-208ENST00000604743 IGF1RP08069 1367 aa24.59■■□□□ 1.53
TUBE1-208ENST00000604743 NUP160Q12769 1436 aa24.58■■□□□ 1.53
TUBE1-208ENST00000604743 ARAP1Q96P48 1450 aa24.57■■□□□ 1.52
TUBE1-208ENST00000604743 CUL7Q14999 1698 aa24.54■■□□□ 1.52
TUBE1-208ENST00000604743 RUSC2Q8N2Y8 1516 aa24.47■■□□□ 1.51
TUBE1-208ENST00000604743 CARMIL1Q5VZK9 1371 aa24.47■■□□□ 1.51
TUBE1-208ENST00000604743 ERCC6L2Q5T890 1561 aa24.45■■□□□ 1.5
TUBE1-208ENST00000604743 SHROOM2Q13796 1616 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms