RNA–Protein interactions for RNA: ENST00000602086.5

ZNF548-212, Transcript of zinc finger protein 548, humanhuman

TSL 4

Gene ZNF548, Length 567 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF548-212ENST00000602086 NISCHQ9Y2I1 1504 aa33.14■■■□□ 2.9
ZNF548-212ENST00000602086 CCDC180Q9P1Z9 1646 aa29.1■■■□□ 2.25
ZNF548-212ENST00000602086 ABCC9O60706 1549 aa28.72■■■□□ 2.19
ZNF548-212ENST00000602086 ZCCHC6Q5VYS8 1495 aaKnown RBP27.82■■■□□ 2.04
ZNF548-212ENST00000602086 DCAF1Q9Y4B6 1507 aa27.56■■■□□ 2
ZNF548-212ENST00000602086 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
ZNF548-212ENST00000602086 RB1CC1Q8TDY2 1594 aa27.18■■□□□ 1.94
ZNF548-212ENST00000602086 DCAF8L2P0C7V8 631 aa27.13■■□□□ 1.93
ZNF548-212ENST00000602086 NACADO15069 1562 aa27.12■■□□□ 1.93
ZNF548-212ENST00000602086 DNAJC5BQ9UF47 199 aa27.05■■□□□ 1.92
ZNF548-212ENST00000602086 UNC13AQ9UPW8 1703 aa26.79■■□□□ 1.88
ZNF548-212ENST00000602086 PABPN1Q86U42 306 aaKnown RBP eCLIP26.65■■□□□ 1.86
ZNF548-212ENST00000602086 SHROOM4Q9ULL8 1493 aa26.59■■□□□ 1.85
ZNF548-212ENST00000602086 SCRIBQ14160 1630 aa26.5■■□□□ 1.83
ZNF548-212ENST00000602086 BICRAQ9NZM4 1560 aa26.45■■□□□ 1.82
ZNF548-212ENST00000602086 CC2D2AQ9P2K1 1620 aa25.95■■□□□ 1.74
ZNF548-212ENST00000602086 CECR2Q9BXF3 1484 aa25.83■■□□□ 1.73
ZNF548-212ENST00000602086 EIF4G1Q04637 1599 aaKnown RBP25.8■■□□□ 1.72
ZNF548-212ENST00000602086 BAZ1AQ9NRL2 1556 aaPredicted RBP25.64■■□□□ 1.69
ZNF548-212ENST00000602086 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
ZNF548-212ENST00000602086 SUPT5HO00267 1087 aaKnown RBP25.53■■□□□ 1.68
ZNF548-212ENST00000602086 MROH2BQ7Z745 1585 aa25.52■■□□□ 1.68
ZNF548-212ENST00000602086 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
ZNF548-212ENST00000602086 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
ZNF548-212ENST00000602086 WIZO95785 1651 aa25.28■■□□□ 1.64
ZNF548-212ENST00000602086 SMARCA2P51531 1590 aa25.18■■□□□ 1.62
ZNF548-212ENST00000602086 ATAD2BQ9ULI0 1458 aa25.13■■□□□ 1.61
ZNF548-212ENST00000602086 TOP2AP11388 1531 aaKnown RBP25.12■■□□□ 1.61
ZNF548-212ENST00000602086 NCAPD3P42695 1498 aa25.01■■□□□ 1.59
ZNF548-212ENST00000602086 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
ZNF548-212ENST00000602086 BAZ1BQ9UIG0 1483 aaKnown RBP24.95■■□□□ 1.58
ZNF548-212ENST00000602086 DNAJC5Q9H3Z4 198 aa24.89■■□□□ 1.58
ZNF548-212ENST00000602086 CCDC88BA6NC98 1476 aa24.79■■□□□ 1.56
ZNF548-212ENST00000602086 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
ZNF548-212ENST00000602086 CUX2O14529 1486 aa24.73■■□□□ 1.55
ZNF548-212ENST00000602086 NESP48681 1621 aa24.63■■□□□ 1.53
ZNF548-212ENST00000602086 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
ZNF548-212ENST00000602086 THOC2Q8NI27 1593 aaKnown RBP24.45■■□□□ 1.5
ZNF548-212ENST00000602086 KIF21AQ7Z4S6 1674 aa24.4■■□□□ 1.5
ZNF548-212ENST00000602086 CFTRP13569 1480 aa24.37■■□□□ 1.49
ZNF548-212ENST00000602086 LAMC3Q9Y6N6 1575 aa24.33■■□□□ 1.49
ZNF548-212ENST00000602086 PRDM2Q13029 1718 aa24.3■■□□□ 1.48
ZNF548-212ENST00000602086 CADPSQ9ULU8 1353 aa24.29■■□□□ 1.48
ZNF548-212ENST00000602086 TRIM41Q8WV44 630 aa24.13■■□□□ 1.45
ZNF548-212ENST00000602086 ABCC8Q09428 1581 aa24.12■■□□□ 1.45
ZNF548-212ENST00000602086 PDS5BQ9NTI5 1447 aa24.11■■□□□ 1.45
ZNF548-212ENST00000602086 WRNQ14191 1432 aaPredicted RBP eCLIP24.1■■□□□ 1.45
ZNF548-212ENST00000602086 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
ZNF548-212ENST00000602086 FANCD2Q9BXW9 1451 aa23.99■■□□□ 1.43
ZNF548-212ENST00000602086 WDR62O43379 1518 aa23.99■■□□□ 1.43
ZNF548-212ENST00000602086 BIVM-ERCC5R4GMW8 1640 aa23.98■■□□□ 1.43
ZNF548-212ENST00000602086 SYNJ1O43426 1573 aa23.97■■□□□ 1.43
ZNF548-212ENST00000602086 TOP2BQ02880 1626 aa23.97■■□□□ 1.43
ZNF548-212ENST00000602086 CUX1P39880 1505 aa23.89■■□□□ 1.41
ZNF548-212ENST00000602086 CEP164Q9UPV0 1460 aa23.88■■□□□ 1.41
ZNF548-212ENST00000602086 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
ZNF548-212ENST00000602086 EEA1Q15075 1411 aa23.77■■□□□ 1.4
ZNF548-212ENST00000602086 TOPBP1Q92547 1522 aa23.73■■□□□ 1.39
ZNF548-212ENST00000602086 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
ZNF548-212ENST00000602086 FGD5Q6ZNL6 1462 aa23.65■■□□□ 1.38
ZNF548-212ENST00000602086 SOGA1O94964 1423 aa23.64■■□□□ 1.37
ZNF548-212ENST00000602086 POLA1P09884 1462 aaPredicted RBP23.58■■□□□ 1.37
ZNF548-212ENST00000602086 RUSC2Q8N2Y8 1516 aa23.54■■□□□ 1.36
ZNF548-212ENST00000602086 KIF27Q86VH2 1401 aa23.53■■□□□ 1.36
ZNF548-212ENST00000602086 CSRNP3Q8WYN3 585 aa23.52■■□□□ 1.36
ZNF548-212ENST00000602086 ABCA10Q8WWZ4 1543 aa23.52■■□□□ 1.36
ZNF548-212ENST00000602086 FAM9AQ8IZU1 332 aaPredicted RBP23.51■■□□□ 1.35
ZNF548-212ENST00000602086 OSCARQ8IYS5 282 aa23.48■■□□□ 1.35
ZNF548-212ENST00000602086 WDR97A6NE52 1622 aa23.46■■□□□ 1.35
ZNF548-212ENST00000602086 ZNF608Q9ULD9 1512 aaPredicted RBP23.44■■□□□ 1.34
ZNF548-212ENST00000602086 RIMBP3CA6NJZ7 1639 aa23.44■■□□□ 1.34
ZNF548-212ENST00000602086 RIMBP3BA6NNM3 1639 aa23.44■■□□□ 1.34
ZNF548-212ENST00000602086 RIMBP3Q9UFD9 1639 aa23.44■■□□□ 1.34
ZNF548-212ENST00000602086 KIF21BO75037 1637 aa23.42■■□□□ 1.34
ZNF548-212ENST00000602086 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
ZNF548-212ENST00000602086 RAD54L2Q9Y4B4 1467 aa23.42■■□□□ 1.34
ZNF548-212ENST00000602086 LOC105371045A0A1W2PR82 267 aa23.39■■□□□ 1.33
ZNF548-212ENST00000602086 IFT140Q96RY7 1462 aa23.36■■□□□ 1.33
ZNF548-212ENST00000602086 EIF4G3O43432 1585 aaKnown RBP23.36■■□□□ 1.33
ZNF548-212ENST00000602086 PRXQ9BXM0 1461 aa23.34■■□□□ 1.33
ZNF548-212ENST00000602086 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.33
ZNF548-212ENST00000602086 GOLGA3Q08378 1498 aa23.33■■□□□ 1.33
ZNF548-212ENST00000602086 ERICH3Q5RHP9 1530 aa23.33■■□□□ 1.32
ZNF548-212ENST00000602086 IGF1RP08069 1367 aa23.31■■□□□ 1.32
ZNF548-212ENST00000602086 CHD1O14646 1710 aa23.3■■□□□ 1.32
ZNF548-212ENST00000602086 ARHGEF11O15085 1522 aa23.28■■□□□ 1.32
ZNF548-212ENST00000602086 GAPVD1Q14C86 1478 aa23.25■■□□□ 1.31
ZNF548-212ENST00000602086 TNIKQ9UKE5 1360 aa23.25■■□□□ 1.31
ZNF548-212ENST00000602086 CUL7Q14999 1698 aa23.24■■□□□ 1.31
ZNF548-212ENST00000602086 RAPGEF2Q9Y4G8 1499 aa23.2■■□□□ 1.3
ZNF548-212ENST00000602086 TDRD9Q8NDG6 1382 aaKnown RBP23.2■■□□□ 1.3
ZNF548-212ENST00000602086 CARMIL1Q5VZK9 1371 aa23.19■■□□□ 1.3
ZNF548-212ENST00000602086 AQRO60306 1485 aaKnown RBP eCLIP23.16■■□□□ 1.34e-10■■■■■ 60.8
ZNF548-212ENST00000602086 PBRM1Q86U86 1689 aa23.15■■□□□ 1.3
ZNF548-212ENST00000602086 GRIN2BQ13224 1484 aa23.13■■□□□ 1.29
ZNF548-212ENST00000602086 UBTFP17480 764 aaKnown RBP23.1■■□□□ 1.29
ZNF548-212ENST00000602086 EHMT2Q96KQ7 1210 aa23.05■■□□□ 1.28
ZNF548-212ENST00000602086 ARAP1Q96P48 1450 aa23.05■■□□□ 1.28
ZNF548-212ENST00000602086 FHAD1B1AJZ9 1412 aa23.04■■□□□ 1.28
ZNF548-212ENST00000602086 CEP162Q5TB80 1403 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms