RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 NISCHQ9Y2I1 1504 aa34.5■■■■□ 3.11
USE1-210ENST00000601662 CCDC180Q9P1Z9 1646 aa30.59■■■□□ 2.49
USE1-210ENST00000601662 ABCC9O60706 1549 aa30.22■■■□□ 2.43
USE1-210ENST00000601662 DCAF8L2P0C7V8 631 aa29.14■■■□□ 2.26
USE1-210ENST00000601662 RB1CC1Q8TDY2 1594 aa28.92■■■□□ 2.22
USE1-210ENST00000601662 NACADO15069 1562 aa28.84■■■□□ 2.21
USE1-210ENST00000601662 ZCCHC6Q5VYS8 1495 aaKnown RBP28.68■■■□□ 2.18
USE1-210ENST00000601662 MYO15BQ96JP2 1530 aa28.57■■■□□ 2.16
USE1-210ENST00000601662 DCAF1Q9Y4B6 1507 aa28.44■■■□□ 2.14
USE1-210ENST00000601662 PABPN1Q86U42 306 aaKnown RBP eCLIP28.31■■■□□ 2.12
USE1-210ENST00000601662 UNC13AQ9UPW8 1703 aa28.23■■■□□ 2.11
USE1-210ENST00000601662 SCRIBQ14160 1630 aa28.06■■■□□ 2.08
USE1-210ENST00000601662 BICRAQ9NZM4 1560 aa28.03■■■□□ 2.08
USE1-210ENST00000601662 DNAJC5BQ9UF47 199 aa27.84■■■□□ 2.05
USE1-210ENST00000601662 SHROOM4Q9ULL8 1493 aa27.63■■■□□ 2.01
USE1-210ENST00000601662 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
USE1-210ENST00000601662 CC2D2AQ9P2K1 1620 aa27.25■■□□□ 1.95
USE1-210ENST00000601662 CECR2Q9BXF3 1484 aa27.12■■□□□ 1.93
USE1-210ENST00000601662 SMARCA4P51532 1647 aa26.76■■□□□ 1.87
USE1-210ENST00000601662 BAZ1AQ9NRL2 1556 aaPredicted RBP26.72■■□□□ 1.87
USE1-210ENST00000601662 ATAD2BQ9ULI0 1458 aa26.68■■□□□ 1.86
USE1-210ENST00000601662 NCAPD3P42695 1498 aa26.64■■□□□ 1.86
USE1-210ENST00000601662 MROH2BQ7Z745 1585 aa26.63■■□□□ 1.85
USE1-210ENST00000601662 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
USE1-210ENST00000601662 BAZ1BQ9UIG0 1483 aaKnown RBP26.47■■□□□ 1.83
USE1-210ENST00000601662 HMGXB3Q12766 1538 aa26.45■■□□□ 1.83
USE1-210ENST00000601662 PEG3Q9GZU2 1588 aa26.43■■□□□ 1.82
USE1-210ENST00000601662 WIZO95785 1651 aa26.33■■□□□ 1.81
USE1-210ENST00000601662 RSF1Q96T23 1441 aaPredicted RBP26.3■■□□□ 1.8
USE1-210ENST00000601662 NESP48681 1621 aa26.1■■□□□ 1.77
USE1-210ENST00000601662 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
USE1-210ENST00000601662 TOP2AP11388 1531 aaKnown RBP25.99■■□□□ 1.75
USE1-210ENST00000601662 LAMC3Q9Y6N6 1575 aa25.92■■□□□ 1.74
USE1-210ENST00000601662 CADPSQ9ULU8 1353 aa25.92■■□□□ 1.74
USE1-210ENST00000601662 PDS5BQ9NTI5 1447 aa25.82■■□□□ 1.72
USE1-210ENST00000601662 SUPT5HO00267 1087 aaKnown RBP25.77■■□□□ 1.72
USE1-210ENST00000601662 CCDC88BA6NC98 1476 aa25.76■■□□□ 1.71
USE1-210ENST00000601662 KIF21AQ7Z4S6 1674 aa25.72■■□□□ 1.71
USE1-210ENST00000601662 CFTRP13569 1480 aa25.7■■□□□ 1.7
USE1-210ENST00000601662 CUX2O14529 1486 aa25.68■■□□□ 1.7
USE1-210ENST00000601662 THOC2Q8NI27 1593 aaKnown RBP25.61■■□□□ 1.69
USE1-210ENST00000601662 FANCD2Q9BXW9 1451 aa25.61■■□□□ 1.69
USE1-210ENST00000601662 CEP164Q9UPV0 1460 aa25.57■■□□□ 1.68
USE1-210ENST00000601662 MRC2Q9UBG0 1479 aa25.54■■□□□ 1.68
USE1-210ENST00000601662 WDR62O43379 1518 aa25.41■■□□□ 1.66
USE1-210ENST00000601662 PRDM2Q13029 1718 aa25.4■■□□□ 1.66
USE1-210ENST00000601662 URB2Q14146 1524 aaKnown RBP25.34■■□□□ 1.65
USE1-210ENST00000601662 TOPBP1Q92547 1522 aa25.18■■□□□ 1.62
USE1-210ENST00000601662 ABCC8Q09428 1581 aa25.14■■□□□ 1.61
USE1-210ENST00000601662 DNMBPQ6XZF7 1577 aa25.11■■□□□ 1.61
USE1-210ENST00000601662 DNAJC5Q9H3Z4 198 aa25.09■■□□□ 1.61
USE1-210ENST00000601662 IFT140Q96RY7 1462 aa25.03■■□□□ 1.6
USE1-210ENST00000601662 ZNF608Q9ULD9 1512 aaPredicted RBP24.97■■□□□ 1.59
USE1-210ENST00000601662 CUX1P39880 1505 aa24.96■■□□□ 1.59
USE1-210ENST00000601662 POLA1P09884 1462 aaPredicted RBP24.96■■□□□ 1.59
USE1-210ENST00000601662 RAD54L2Q9Y4B4 1467 aa24.92■■□□□ 1.58
USE1-210ENST00000601662 SOGA1O94964 1423 aa24.92■■□□□ 1.58
USE1-210ENST00000601662 FGD5Q6ZNL6 1462 aa24.91■■□□□ 1.58
USE1-210ENST00000601662 TARBP1Q13395 1621 aaKnown RBP24.86■■□□□ 1.57
USE1-210ENST00000601662 AQRO60306 1485 aaKnown RBP eCLIP24.86■■□□□ 1.579e-7■■■■■ 33.4
USE1-210ENST00000601662 TDRD9Q8NDG6 1382 aaKnown RBP24.82■■□□□ 1.56
USE1-210ENST00000601662 WRNQ14191 1432 aaPredicted RBP eCLIP24.81■■□□□ 1.56
USE1-210ENST00000601662 EIF4G3O43432 1585 aaKnown RBP24.8■■□□□ 1.56
USE1-210ENST00000601662 OSCARQ8IYS5 282 aa24.74■■□□□ 1.55
USE1-210ENST00000601662 SYNJ1O43426 1573 aa24.71■■□□□ 1.55
USE1-210ENST00000601662 TOP2BQ02880 1626 aa24.69■■□□□ 1.54
USE1-210ENST00000601662 FBLN2P98095 1184 aa24.69■■□□□ 1.54
USE1-210ENST00000601662 BIVM-ERCC5R4GMW8 1640 aa24.66■■□□□ 1.54
USE1-210ENST00000601662 ABCA10Q8WWZ4 1543 aa24.62■■□□□ 1.53
USE1-210ENST00000601662 GAPVD1Q14C86 1478 aa24.59■■□□□ 1.53
USE1-210ENST00000601662 WDR97A6NE52 1622 aa24.59■■□□□ 1.53
USE1-210ENST00000601662 GRIN2BQ13224 1484 aa24.58■■□□□ 1.53
USE1-210ENST00000601662 SNAPC4Q5SXM2 1469 aa24.58■■□□□ 1.52
USE1-210ENST00000601662 CHMP7Q8WUX9 453 aaPredicted RBP24.54■■□□□ 1.52
USE1-210ENST00000601662 CHD1O14646 1710 aa24.51■■□□□ 1.51
USE1-210ENST00000601662 ABCA5Q8WWZ7 1642 aa24.5■■□□□ 1.51
USE1-210ENST00000601662 MAGI1Q96QZ7 1491 aaPredicted RBP24.49■■□□□ 1.51
USE1-210ENST00000601662 PBRM1Q86U86 1689 aa24.47■■□□□ 1.51
USE1-210ENST00000601662 SYNJ2O15056 1496 aa24.42■■□□□ 1.5
USE1-210ENST00000601662 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
USE1-210ENST00000601662 CHIC1Q5VXU3 224 aa24.35■■□□□ 1.49
USE1-210ENST00000601662 ERICH3Q5RHP9 1530 aa24.3■■□□□ 1.48
USE1-210ENST00000601662 FHAD1B1AJZ9 1412 aa24.29■■□□□ 1.48
USE1-210ENST00000601662 KIF27Q86VH2 1401 aa24.29■■□□□ 1.48
USE1-210ENST00000601662 ADAMTS12P58397 1594 aa24.29■■□□□ 1.48
USE1-210ENST00000601662 GRIN2AQ12879 1464 aa24.26■■□□□ 1.47
USE1-210ENST00000601662 ARHGEF11O15085 1522 aa24.25■■□□□ 1.47
USE1-210ENST00000601662 RIMBP3CA6NJZ7 1639 aa24.25■■□□□ 1.47
USE1-210ENST00000601662 RIMBP3BA6NNM3 1639 aa24.25■■□□□ 1.47
USE1-210ENST00000601662 RIMBP3Q9UFD9 1639 aa24.25■■□□□ 1.47
USE1-210ENST00000601662 IGF1RP08069 1367 aa24.23■■□□□ 1.47
USE1-210ENST00000601662 CLASP1Q7Z460 1538 aa24.21■■□□□ 1.47
USE1-210ENST00000601662 CYB5RLQ6IPT4 315 aa24.18■■□□□ 1.46
USE1-210ENST00000601662 CEP170Q5SW79 1584 aa24.13■■□□□ 1.45
USE1-210ENST00000601662 NUP160Q12769 1436 aa24.13■■□□□ 1.45
USE1-210ENST00000601662 RUSC2Q8N2Y8 1516 aa24.1■■□□□ 1.45
USE1-210ENST00000601662 CARMIL1Q5VZK9 1371 aa24.09■■□□□ 1.45
USE1-210ENST00000601662 ARAP1Q96P48 1450 aa24.07■■□□□ 1.44
USE1-210ENST00000601662 CUL7Q14999 1698 aa24.05■■□□□ 1.44
USE1-210ENST00000601662 JPH4Q96JJ6 628 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms