RNA–Protein interactions for RNA: ENST00000601154.1

CCDC9-206, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 454 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-206ENST00000601154 NISCHQ9Y2I1 1504 aa20.95■□□□□ 0.94
CCDC9-206ENST00000601154 ABCC9O60706 1549 aa19■□□□□ 0.63
CCDC9-206ENST00000601154 CCDC180Q9P1Z9 1646 aa18.78■□□□□ 0.6
CCDC9-206ENST00000601154 RB1CC1Q8TDY2 1594 aa17.97■□□□□ 0.47
CCDC9-206ENST00000601154 DNAJC5BQ9UF47 199 aa17.88■□□□□ 0.45
CCDC9-206ENST00000601154 DCAF8L2P0C7V8 631 aa17.83■□□□□ 0.44
CCDC9-206ENST00000601154 NACADO15069 1562 aa17.8■□□□□ 0.44
CCDC9-206ENST00000601154 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
CCDC9-206ENST00000601154 UNC13AQ9UPW8 1703 aa17.51■□□□□ 0.39
CCDC9-206ENST00000601154 MYO15BQ96JP2 1530 aa17.49■□□□□ 0.39
CCDC9-206ENST00000601154 BICRAQ9NZM4 1560 aa17.45■□□□□ 0.38
CCDC9-206ENST00000601154 ZCCHC6Q5VYS8 1495 aaKnown RBP17.36■□□□□ 0.37
CCDC9-206ENST00000601154 DCAF1Q9Y4B6 1507 aa17.25■□□□□ 0.35
CCDC9-206ENST00000601154 SCRIBQ14160 1630 aa17.21■□□□□ 0.35
CCDC9-206ENST00000601154 SHROOM4Q9ULL8 1493 aa17.16■□□□□ 0.34
CCDC9-206ENST00000601154 CECR2Q9BXF3 1484 aa17.1■□□□□ 0.33
CCDC9-206ENST00000601154 CC2D2AQ9P2K1 1620 aa17.1■□□□□ 0.33
CCDC9-206ENST00000601154 EIF4G1Q04637 1599 aaKnown RBP17.05■□□□□ 0.32
CCDC9-206ENST00000601154 DNAJC5Q9H3Z4 198 aa16.45■□□□□ 0.22
CCDC9-206ENST00000601154 NCAPD3P42695 1498 aa16.45■□□□□ 0.22
CCDC9-206ENST00000601154 ATAD2BQ9ULI0 1458 aa16.42■□□□□ 0.22
CCDC9-206ENST00000601154 ERCC6Q03468 1493 aa16.41■□□□□ 0.22
CCDC9-206ENST00000601154 SMARCA4P51532 1647 aa16.37■□□□□ 0.21
CCDC9-206ENST00000601154 CUX2O14529 1486 aa16.34■□□□□ 0.21
CCDC9-206ENST00000601154 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
CCDC9-206ENST00000601154 HMGXB3Q12766 1538 aa16.32■□□□□ 0.2
CCDC9-206ENST00000601154 NESP48681 1621 aa16.29■□□□□ 0.2
CCDC9-206ENST00000601154 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.19
CCDC9-206ENST00000601154 BAZ1AQ9NRL2 1556 aaPredicted RBP16.26■□□□□ 0.19
CCDC9-206ENST00000601154 MROH2BQ7Z745 1585 aa16.17■□□□□ 0.18
CCDC9-206ENST00000601154 PEG3Q9GZU2 1588 aa16.16■□□□□ 0.18
CCDC9-206ENST00000601154 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
CCDC9-206ENST00000601154 LAMC3Q9Y6N6 1575 aa16.09■□□□□ 0.17
CCDC9-206ENST00000601154 PDS5BQ9NTI5 1447 aa16.02■□□□□ 0.16
CCDC9-206ENST00000601154 KIF21AQ7Z4S6 1674 aa16.02■□□□□ 0.15
CCDC9-206ENST00000601154 CADPSQ9ULU8 1353 aa15.97■□□□□ 0.15
CCDC9-206ENST00000601154 WIZO95785 1651 aa15.96■□□□□ 0.15
CCDC9-206ENST00000601154 MRC2Q9UBG0 1479 aa15.91■□□□□ 0.14
CCDC9-206ENST00000601154 WDR62O43379 1518 aa15.85■□□□□ 0.13
CCDC9-206ENST00000601154 CEP164Q9UPV0 1460 aa15.84■□□□□ 0.13
CCDC9-206ENST00000601154 FANCD2Q9BXW9 1451 aa15.81■□□□□ 0.12
CCDC9-206ENST00000601154 RSF1Q96T23 1441 aaPredicted RBP15.8■□□□□ 0.12
CCDC9-206ENST00000601154 TRIM41Q8WV44 630 aa15.79■□□□□ 0.12
CCDC9-206ENST00000601154 CFTRP13569 1480 aa15.76■□□□□ 0.11
CCDC9-206ENST00000601154 TOP2AP11388 1531 aaKnown RBP15.75■□□□□ 0.11
CCDC9-206ENST00000601154 URB2Q14146 1524 aaKnown RBP15.68■□□□□ 0.1
CCDC9-206ENST00000601154 OSCARQ8IYS5 282 aa15.6■□□□□ 0.09
CCDC9-206ENST00000601154 CCDC88BA6NC98 1476 aa15.58■□□□□ 0.08
CCDC9-206ENST00000601154 ZNF608Q9ULD9 1512 aaPredicted RBP15.52■□□□□ 0.07
CCDC9-206ENST00000601154 PRDM2Q13029 1718 aa15.51■□□□□ 0.07
CCDC9-206ENST00000601154 IFT140Q96RY7 1462 aa15.5■□□□□ 0.07
CCDC9-206ENST00000601154 TOPBP1Q92547 1522 aa15.48■□□□□ 0.07
CCDC9-206ENST00000601154 EIF4G3O43432 1585 aaKnown RBP15.41■□□□□ 0.06
CCDC9-206ENST00000601154 DNMBPQ6XZF7 1577 aa15.41■□□□□ 0.06
CCDC9-206ENST00000601154 RIMBP3CA6NJZ7 1639 aa15.41■□□□□ 0.06
CCDC9-206ENST00000601154 RIMBP3BA6NNM3 1639 aa15.41■□□□□ 0.06
CCDC9-206ENST00000601154 RIMBP3Q9UFD9 1639 aa15.41■□□□□ 0.06
CCDC9-206ENST00000601154 ABCC8Q09428 1581 aa15.4■□□□□ 0.06
CCDC9-206ENST00000601154 AQRO60306 1485 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC9-206ENST00000601154 ARHGEF11O15085 1522 aa15.37■□□□□ 0.05
CCDC9-206ENST00000601154 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.05
CCDC9-206ENST00000601154 TARBP1Q13395 1621 aaKnown RBP15.33■□□□□ 0.04
CCDC9-206ENST00000601154 FBLN2P98095 1184 aa15.33■□□□□ 0.04
CCDC9-206ENST00000601154 RAD54L2Q9Y4B4 1467 aa15.31■□□□□ 0.04
CCDC9-206ENST00000601154 CYB5RLQ6IPT4 315 aa15.29■□□□□ 0.04
CCDC9-206ENST00000601154 CHD1O14646 1710 aa15.29■□□□□ 0.04
CCDC9-206ENST00000601154 TDRD9Q8NDG6 1382 aaKnown RBP15.27■□□□□ 0.04
CCDC9-206ENST00000601154 SOGA1O94964 1423 aa15.26■□□□□ 0.03
CCDC9-206ENST00000601154 FGD5Q6ZNL6 1462 aa15.24■□□□□ 0.03
CCDC9-206ENST00000601154 ARAP1Q96P48 1450 aa15.22■□□□□ 0.03
CCDC9-206ENST00000601154 SNAPC4Q5SXM2 1469 aa15.21■□□□□ 0.03
CCDC9-206ENST00000601154 CUX1P39880 1505 aa15.2■□□□□ 0.02
CCDC9-206ENST00000601154 TRHP20396 242 aaPredicted RBP15.18■□□□□ 0.02
CCDC9-206ENST00000601154 CHMP7Q8WUX9 453 aaPredicted RBP15.16■□□□□ 0.02
CCDC9-206ENST00000601154 WDR97A6NE52 1622 aa15.13■□□□□ 0.01
CCDC9-206ENST00000601154 GRIN2BQ13224 1484 aa15.13■□□□□ 0.01
CCDC9-206ENST00000601154 MAGI1Q96QZ7 1491 aaPredicted RBP15.13■□□□□ 0.01
CCDC9-206ENST00000601154 CLASP1Q7Z460 1538 aa15.12■□□□□ 0.01
CCDC9-206ENST00000601154 SUPT5HO00267 1087 aaKnown RBP15.11■□□□□ 0.01
CCDC9-206ENST00000601154 SYNJ1O43426 1573 aa15.11■□□□□ 0.01
CCDC9-206ENST00000601154 SYNJ2O15056 1496 aa15.08■□□□□ 0.01
CCDC9-206ENST00000601154 GAPVD1Q14C86 1478 aa15.07■□□□□ 0
CCDC9-206ENST00000601154 PBRM1Q86U86 1689 aa15.03■□□□□ -0
CCDC9-206ENST00000601154 ABCA10Q8WWZ4 1543 aa15.02□□□□□ -0.01
CCDC9-206ENST00000601154 ABCA5Q8WWZ7 1642 aa15□□□□□ -0.01
CCDC9-206ENST00000601154 WRNQ14191 1432 aaPredicted RBP eCLIP14.97□□□□□ -0.01
CCDC9-206ENST00000601154 GRIN2AQ12879 1464 aa14.95□□□□□ -0.02
CCDC9-206ENST00000601154 ADAMTS12P58397 1594 aa14.92□□□□□ -0.02
CCDC9-206ENST00000601154 ERCC6L2Q5T890 1561 aa14.92□□□□□ -0.02
CCDC9-206ENST00000601154 TOP2BQ02880 1626 aa14.9□□□□□ -0.02
CCDC9-206ENST00000601154 CEP170Q5SW79 1584 aa14.9□□□□□ -0.02
CCDC9-206ENST00000601154 BIVM-ERCC5R4GMW8 1640 aa14.88□□□□□ -0.03
CCDC9-206ENST00000601154 NUP160Q12769 1436 aa14.88□□□□□ -0.03
CCDC9-206ENST00000601154 FHAD1B1AJZ9 1412 aa14.87□□□□□ -0.03
CCDC9-206ENST00000601154 ERICH3Q5RHP9 1530 aa14.82□□□□□ -0.04
CCDC9-206ENST00000601154 SHROOM2Q13796 1616 aa14.79□□□□□ -0.04
CCDC9-206ENST00000601154 PRG4Q92954 1404 aaPredicted RBP14.78□□□□□ -0.04
CCDC9-206ENST00000601154 AEBP2Q6ZN18 517 aaPredicted RBP14.78□□□□□ -0.04
CCDC9-206ENST00000601154 JPH4Q96JJ6 628 aa14.74□□□□□ -0.05
CCDC9-206ENST00000601154 RUSC2Q8N2Y8 1516 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms