RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 NISCHQ9Y2I1 1504 aa42.39■■■■■ 4.38
SCAF1-204ENST00000601038 CCDC180Q9P1Z9 1646 aa37.94■■■■□ 3.66
SCAF1-204ENST00000601038 ABCC9O60706 1549 aa37.85■■■■□ 3.65
SCAF1-204ENST00000601038 RB1CC1Q8TDY2 1594 aa36.09■■■■□ 3.37
SCAF1-204ENST00000601038 NACADO15069 1562 aa35.89■■■■□ 3.34
SCAF1-204ENST00000601038 DCAF8L2P0C7V8 631 aa35.76■■■■□ 3.32
SCAF1-204ENST00000601038 MYO15BQ96JP2 1530 aa35.47■■■■□ 3.27
SCAF1-204ENST00000601038 DNAJC5BQ9UF47 199 aa35.46■■■■□ 3.27
SCAF1-204ENST00000601038 PABPN1Q86U42 306 aaKnown RBP eCLIP35.29■■■■□ 3.24
SCAF1-204ENST00000601038 UNC13AQ9UPW8 1703 aa35.22■■■■□ 3.23
SCAF1-204ENST00000601038 ZCCHC6Q5VYS8 1495 aaKnown RBP35.14■■■■□ 3.22
SCAF1-204ENST00000601038 DCAF1Q9Y4B6 1507 aa35.03■■■■□ 3.2
SCAF1-204ENST00000601038 BICRAQ9NZM4 1560 aa35.02■■■■□ 3.2
SCAF1-204ENST00000601038 SHROOM4Q9ULL8 1493 aa34.6■■■■□ 3.13
SCAF1-204ENST00000601038 SCRIBQ14160 1630 aa34.56■■■■□ 3.12
SCAF1-204ENST00000601038 CC2D2AQ9P2K1 1620 aa34.2■■■■□ 3.07
SCAF1-204ENST00000601038 EIF4G1Q04637 1599 aaKnown RBP34.15■■■■□ 3.06
SCAF1-204ENST00000601038 CECR2Q9BXF3 1484 aa34.1■■■■□ 3.05
SCAF1-204ENST00000601038 NCAPD3P42695 1498 aa33.16■■■□□ 2.9
SCAF1-204ENST00000601038 ATAD2BQ9ULI0 1458 aa33.05■■■□□ 2.88
SCAF1-204ENST00000601038 SMARCA4P51532 1647 aa33.01■■■□□ 2.87
SCAF1-204ENST00000601038 SMARCA2P51531 1590 aa32.96■■■□□ 2.87
SCAF1-204ENST00000601038 BAZ1AQ9NRL2 1556 aaPredicted RBP32.89■■■□□ 2.86
SCAF1-204ENST00000601038 HMGXB3Q12766 1538 aa32.88■■■□□ 2.85
SCAF1-204ENST00000601038 BAZ1BQ9UIG0 1483 aaKnown RBP32.73■■■□□ 2.83
SCAF1-204ENST00000601038 PEG3Q9GZU2 1588 aa32.71■■■□□ 2.83
SCAF1-204ENST00000601038 ERCC6Q03468 1493 aa32.68■■■□□ 2.82
SCAF1-204ENST00000601038 MROH2BQ7Z745 1585 aa32.65■■■□□ 2.82
SCAF1-204ENST00000601038 CUX2O14529 1486 aa32.61■■■□□ 2.81
SCAF1-204ENST00000601038 NESP48681 1621 aa32.55■■■□□ 2.8
SCAF1-204ENST00000601038 DNAJC5Q9H3Z4 198 aa32.5■■■□□ 2.79
SCAF1-204ENST00000601038 LAMC3Q9Y6N6 1575 aa32.36■■■□□ 2.77
SCAF1-204ENST00000601038 WIZO95785 1651 aa32.24■■■□□ 2.75
SCAF1-204ENST00000601038 PDS5BQ9NTI5 1447 aa32.2■■■□□ 2.75
SCAF1-204ENST00000601038 THOC2Q8NI27 1593 aaKnown RBP32.17■■■□□ 2.74
SCAF1-204ENST00000601038 CADPSQ9ULU8 1353 aa32.16■■■□□ 2.74
SCAF1-204ENST00000601038 KIF21AQ7Z4S6 1674 aa32.09■■■□□ 2.73
SCAF1-204ENST00000601038 RSF1Q96T23 1441 aaPredicted RBP32.04■■■□□ 2.72
SCAF1-204ENST00000601038 MRC2Q9UBG0 1479 aa31.88■■■□□ 2.69
SCAF1-204ENST00000601038 TOP2AP11388 1531 aaKnown RBP31.85■■■□□ 2.69
SCAF1-204ENST00000601038 CFTRP13569 1480 aa31.8■■■□□ 2.68
SCAF1-204ENST00000601038 WDR62O43379 1518 aa31.79■■■□□ 2.68
SCAF1-204ENST00000601038 CEP164Q9UPV0 1460 aa31.78■■■□□ 2.68
SCAF1-204ENST00000601038 FANCD2Q9BXW9 1451 aa31.76■■■□□ 2.67
SCAF1-204ENST00000601038 CCDC88BA6NC98 1476 aa31.52■■■□□ 2.64
SCAF1-204ENST00000601038 URB2Q14146 1524 aaKnown RBP31.48■■■□□ 2.63
SCAF1-204ENST00000601038 PRDM2Q13029 1718 aa31.41■■■□□ 2.62
SCAF1-204ENST00000601038 OSCARQ8IYS5 282 aa31.19■■■□□ 2.58
SCAF1-204ENST00000601038 TOPBP1Q92547 1522 aa31.17■■■□□ 2.58
SCAF1-204ENST00000601038 IFT140Q96RY7 1462 aa31.15■■■□□ 2.58
SCAF1-204ENST00000601038 ABCC8Q09428 1581 aa31.15■■■□□ 2.58
SCAF1-204ENST00000601038 TRIM41Q8WV44 630 aa31.08■■■□□ 2.57
SCAF1-204ENST00000601038 ZNF608Q9ULD9 1512 aaPredicted RBP31.07■■■□□ 2.56
SCAF1-204ENST00000601038 DNMBPQ6XZF7 1577 aa31.05■■■□□ 2.56
SCAF1-204ENST00000601038 EIF4G3O43432 1585 aaKnown RBP30.87■■■□□ 2.53
SCAF1-204ENST00000601038 TARBP1Q13395 1621 aaKnown RBP30.86■■■□□ 2.53
SCAF1-204ENST00000601038 POLA1P09884 1462 aaPredicted RBP30.85■■■□□ 2.53
SCAF1-204ENST00000601038 AQRO60306 1485 aaKnown RBP eCLIP30.82■■■□□ 2.532e-6■■■■□ 23.2
SCAF1-204ENST00000601038 SOGA1O94964 1423 aa30.75■■■□□ 2.51
SCAF1-204ENST00000601038 RAD54L2Q9Y4B4 1467 aa30.74■■■□□ 2.51
SCAF1-204ENST00000601038 SUPT5HO00267 1087 aaKnown RBP30.72■■■□□ 2.51
SCAF1-204ENST00000601038 RIMBP3CA6NJZ7 1639 aa30.68■■■□□ 2.5
SCAF1-204ENST00000601038 RIMBP3BA6NNM3 1639 aa30.68■■■□□ 2.5
SCAF1-204ENST00000601038 RIMBP3Q9UFD9 1639 aa30.68■■■□□ 2.5
SCAF1-204ENST00000601038 FGD5Q6ZNL6 1462 aa30.67■■■□□ 2.5
SCAF1-204ENST00000601038 CUX1P39880 1505 aa30.67■■■□□ 2.5
SCAF1-204ENST00000601038 TDRD9Q8NDG6 1382 aaKnown RBP30.66■■■□□ 2.5
SCAF1-204ENST00000601038 FBLN2P98095 1184 aa30.62■■■□□ 2.49
SCAF1-204ENST00000601038 ARHGEF11O15085 1522 aa30.62■■■□□ 2.49
SCAF1-204ENST00000601038 CHD1O14646 1710 aa30.61■■■□□ 2.49
SCAF1-204ENST00000601038 WDR97A6NE52 1622 aa30.58■■■□□ 2.49
SCAF1-204ENST00000601038 SNAPC4Q5SXM2 1469 aa30.49■■■□□ 2.47
SCAF1-204ENST00000601038 GRIN2BQ13224 1484 aa30.45■■■□□ 2.47
SCAF1-204ENST00000601038 MAGI1Q96QZ7 1491 aaPredicted RBP30.44■■■□□ 2.46
SCAF1-204ENST00000601038 CYB5RLQ6IPT4 315 aa30.43■■■□□ 2.46
SCAF1-204ENST00000601038 CHMP7Q8WUX9 453 aaPredicted RBP30.43■■■□□ 2.46
SCAF1-204ENST00000601038 GAPVD1Q14C86 1478 aa30.37■■■□□ 2.45
SCAF1-204ENST00000601038 ABCA10Q8WWZ4 1543 aa30.36■■■□□ 2.45
SCAF1-204ENST00000601038 SYNJ2O15056 1496 aa30.34■■■□□ 2.45
SCAF1-204ENST00000601038 ARAP1Q96P48 1450 aa30.31■■■□□ 2.44
SCAF1-204ENST00000601038 SYNJ1O43426 1573 aa30.3■■■□□ 2.44
SCAF1-204ENST00000601038 CLASP1Q7Z460 1538 aa30.29■■■□□ 2.44
SCAF1-204ENST00000601038 PBRM1Q86U86 1689 aa30.27■■■□□ 2.44
SCAF1-204ENST00000601038 WRNQ14191 1432 aaPredicted RBP eCLIP30.27■■■□□ 2.44
SCAF1-204ENST00000601038 ABCA5Q8WWZ7 1642 aa30.25■■■□□ 2.43
SCAF1-204ENST00000601038 TOP2BQ02880 1626 aa30.2■■■□□ 2.43
SCAF1-204ENST00000601038 BIVM-ERCC5R4GMW8 1640 aa30.18■■■□□ 2.42
SCAF1-204ENST00000601038 TRHP20396 242 aaPredicted RBP30.05■■■□□ 2.4
SCAF1-204ENST00000601038 GRIN2AQ12879 1464 aa30.05■■■□□ 2.4
SCAF1-204ENST00000601038 ADAMTS12P58397 1594 aa30.02■■■□□ 2.4
SCAF1-204ENST00000601038 FHAD1B1AJZ9 1412 aa29.99■■■□□ 2.39
SCAF1-204ENST00000601038 ERICH3Q5RHP9 1530 aa29.97■■■□□ 2.39
SCAF1-204ENST00000601038 NUP160Q12769 1436 aa29.96■■■□□ 2.39
SCAF1-204ENST00000601038 CEP170Q5SW79 1584 aa29.91■■■□□ 2.38
SCAF1-204ENST00000601038 ERCC6L2Q5T890 1561 aa29.82■■■□□ 2.36
SCAF1-204ENST00000601038 SHROOM2Q13796 1616 aa29.78■■■□□ 2.36
SCAF1-204ENST00000601038 JPH4Q96JJ6 628 aa29.7■■■□□ 2.35
SCAF1-204ENST00000601038 KIF27Q86VH2 1401 aa29.66■■■□□ 2.34
SCAF1-204ENST00000601038 PRG4Q92954 1404 aaPredicted RBP29.66■■■□□ 2.34
SCAF1-204ENST00000601038 IGF1RP08069 1367 aa29.65■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms