RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
USE1-208ENST00000600970 ABCC9O60706 1549 aa38.8■■■■□ 3.8
USE1-208ENST00000600970 CCDC180Q9P1Z9 1646 aa38.47■■■■□ 3.75
USE1-208ENST00000600970 RB1CC1Q8TDY2 1594 aa36.78■■■■□ 3.48
USE1-208ENST00000600970 DNAJC5BQ9UF47 199 aa36.73■■■■□ 3.47
USE1-208ENST00000600970 NACADO15069 1562 aa36.44■■■■□ 3.42
USE1-208ENST00000600970 DCAF8L2P0C7V8 631 aa36.14■■■■□ 3.38
USE1-208ENST00000600970 PABPN1Q86U42 306 aaKnown RBP eCLIP36.05■■■■□ 3.36
USE1-208ENST00000600970 UNC13AQ9UPW8 1703 aa36.02■■■■□ 3.36
USE1-208ENST00000600970 MYO15BQ96JP2 1530 aa35.81■■■■□ 3.32
USE1-208ENST00000600970 BICRAQ9NZM4 1560 aa35.75■■■■□ 3.31
USE1-208ENST00000600970 ZCCHC6Q5VYS8 1495 aaKnown RBP35.29■■■■□ 3.24
USE1-208ENST00000600970 DCAF1Q9Y4B6 1507 aa35.22■■■■□ 3.23
USE1-208ENST00000600970 SHROOM4Q9ULL8 1493 aa35.18■■■■□ 3.22
USE1-208ENST00000600970 CC2D2AQ9P2K1 1620 aa35.06■■■■□ 3.2
USE1-208ENST00000600970 SCRIBQ14160 1630 aa35.03■■■■□ 3.2
USE1-208ENST00000600970 CECR2Q9BXF3 1484 aa34.98■■■■□ 3.19
USE1-208ENST00000600970 EIF4G1Q04637 1599 aaKnown RBP34.88■■■■□ 3.17
USE1-208ENST00000600970 DNAJC5Q9H3Z4 198 aa33.97■■■■□ 3.03
USE1-208ENST00000600970 NCAPD3P42695 1498 aa33.63■■■□□ 2.97
USE1-208ENST00000600970 CUX2O14529 1486 aa33.58■■■□□ 2.97
USE1-208ENST00000600970 ERCC6Q03468 1493 aa33.5■■■□□ 2.95
USE1-208ENST00000600970 ATAD2BQ9ULI0 1458 aa33.49■■■□□ 2.95
USE1-208ENST00000600970 SMARCA4P51532 1647 aa33.38■■■□□ 2.93
USE1-208ENST00000600970 SMARCA2P51531 1590 aa33.38■■■□□ 2.93
USE1-208ENST00000600970 HMGXB3Q12766 1538 aa33.36■■■□□ 2.93
USE1-208ENST00000600970 NESP48681 1621 aa33.24■■■□□ 2.91
USE1-208ENST00000600970 BAZ1AQ9NRL2 1556 aaPredicted RBP33.14■■■□□ 2.9
USE1-208ENST00000600970 BAZ1BQ9UIG0 1483 aaKnown RBP33.13■■■□□ 2.89
USE1-208ENST00000600970 PEG3Q9GZU2 1588 aa33.05■■■□□ 2.88
USE1-208ENST00000600970 THOC2Q8NI27 1593 aaKnown RBP33■■■□□ 2.87
USE1-208ENST00000600970 LAMC3Q9Y6N6 1575 aa32.96■■■□□ 2.87
USE1-208ENST00000600970 MROH2BQ7Z745 1585 aa32.89■■■□□ 2.86
USE1-208ENST00000600970 KIF21AQ7Z4S6 1674 aa32.83■■■□□ 2.85
USE1-208ENST00000600970 PDS5BQ9NTI5 1447 aa32.75■■■□□ 2.83
USE1-208ENST00000600970 CADPSQ9ULU8 1353 aa32.58■■■□□ 2.81
USE1-208ENST00000600970 WIZO95785 1651 aa32.5■■■□□ 2.79
USE1-208ENST00000600970 MRC2Q9UBG0 1479 aa32.49■■■□□ 2.79
USE1-208ENST00000600970 WDR62O43379 1518 aa32.44■■■□□ 2.78
USE1-208ENST00000600970 TRIM41Q8WV44 630 aa32.32■■■□□ 2.76
USE1-208ENST00000600970 CEP164Q9UPV0 1460 aa32.3■■■□□ 2.76
USE1-208ENST00000600970 FANCD2Q9BXW9 1451 aa32.23■■■□□ 2.75
USE1-208ENST00000600970 CFTRP13569 1480 aa32.15■■■□□ 2.74
USE1-208ENST00000600970 RSF1Q96T23 1441 aaPredicted RBP32.06■■■□□ 2.72
USE1-208ENST00000600970 TOP2AP11388 1531 aaKnown RBP32.04■■■□□ 2.72
USE1-208ENST00000600970 URB2Q14146 1524 aaKnown RBP32■■■□□ 2.71
USE1-208ENST00000600970 OSCARQ8IYS5 282 aa31.97■■■□□ 2.71
USE1-208ENST00000600970 PRDM2Q13029 1718 aa31.86■■■□□ 2.69
USE1-208ENST00000600970 CCDC88BA6NC98 1476 aa31.68■■■□□ 2.66
USE1-208ENST00000600970 ZNF608Q9ULD9 1512 aaPredicted RBP31.66■■■□□ 2.66
USE1-208ENST00000600970 IFT140Q96RY7 1462 aa31.65■■■□□ 2.66
USE1-208ENST00000600970 RIMBP3CA6NJZ7 1639 aa31.65■■■□□ 2.66
USE1-208ENST00000600970 RIMBP3BA6NNM3 1639 aa31.65■■■□□ 2.66
USE1-208ENST00000600970 RIMBP3Q9UFD9 1639 aa31.65■■■□□ 2.66
USE1-208ENST00000600970 TOPBP1Q92547 1522 aa31.59■■■□□ 2.65
USE1-208ENST00000600970 ARHGEF11O15085 1522 aa31.49■■■□□ 2.63
USE1-208ENST00000600970 EIF4G3O43432 1585 aaKnown RBP31.48■■■□□ 2.63
USE1-208ENST00000600970 ABCC8Q09428 1581 aa31.48■■■□□ 2.63
USE1-208ENST00000600970 DNMBPQ6XZF7 1577 aa31.44■■■□□ 2.62
USE1-208ENST00000600970 TARBP1Q13395 1621 aaKnown RBP31.35■■■□□ 2.61
USE1-208ENST00000600970 CHD1O14646 1710 aa31.34■■■□□ 2.61
USE1-208ENST00000600970 AQRO60306 1485 aaKnown RBP eCLIP31.32■■■□□ 2.69e-7■■■■■ 33.4
USE1-208ENST00000600970 CYB5RLQ6IPT4 315 aa31.26■■■□□ 2.59
USE1-208ENST00000600970 POLA1P09884 1462 aaPredicted RBP31.24■■■□□ 2.59
USE1-208ENST00000600970 FBLN2P98095 1184 aa31.17■■■□□ 2.58
USE1-208ENST00000600970 ARAP1Q96P48 1450 aa31.16■■■□□ 2.58
USE1-208ENST00000600970 RAD54L2Q9Y4B4 1467 aa31.14■■■□□ 2.57
USE1-208ENST00000600970 SOGA1O94964 1423 aa31.08■■■□□ 2.57
USE1-208ENST00000600970 TDRD9Q8NDG6 1382 aaKnown RBP31.06■■■□□ 2.56
USE1-208ENST00000600970 TRHP20396 242 aaPredicted RBP31.02■■■□□ 2.56
USE1-208ENST00000600970 SNAPC4Q5SXM2 1469 aa31■■■□□ 2.55
USE1-208ENST00000600970 WDR97A6NE52 1622 aa30.99■■■□□ 2.55
USE1-208ENST00000600970 FGD5Q6ZNL6 1462 aa30.99■■■□□ 2.55
USE1-208ENST00000600970 CLASP1Q7Z460 1538 aa30.94■■■□□ 2.54
USE1-208ENST00000600970 CUX1P39880 1505 aa30.93■■■□□ 2.54
USE1-208ENST00000600970 MAGI1Q96QZ7 1491 aaPredicted RBP30.89■■■□□ 2.53
USE1-208ENST00000600970 SYNJ1O43426 1573 aa30.88■■■□□ 2.53
USE1-208ENST00000600970 CHMP7Q8WUX9 453 aaPredicted RBP30.88■■■□□ 2.53
USE1-208ENST00000600970 GRIN2BQ13224 1484 aa30.85■■■□□ 2.53
USE1-208ENST00000600970 SYNJ2O15056 1496 aa30.79■■■□□ 2.52
USE1-208ENST00000600970 PBRM1Q86U86 1689 aa30.76■■■□□ 2.51
USE1-208ENST00000600970 GAPVD1Q14C86 1478 aa30.7■■■□□ 2.51
USE1-208ENST00000600970 ABCA5Q8WWZ7 1642 aa30.63■■■□□ 2.49
USE1-208ENST00000600970 ABCA10Q8WWZ4 1543 aa30.62■■■□□ 2.49
USE1-208ENST00000600970 GRIN2AQ12879 1464 aa30.46■■■□□ 2.47
USE1-208ENST00000600970 ERCC6L2Q5T890 1561 aa30.45■■■□□ 2.47
USE1-208ENST00000600970 ADAMTS12P58397 1594 aa30.41■■■□□ 2.46
USE1-208ENST00000600970 WRNQ14191 1432 aaPredicted RBP eCLIP30.4■■■□□ 2.46
USE1-208ENST00000600970 CEP170Q5SW79 1584 aa30.4■■■□□ 2.46
USE1-208ENST00000600970 AEBP2Q6ZN18 517 aaPredicted RBP30.37■■■□□ 2.45
USE1-208ENST00000600970 NUP160Q12769 1436 aa30.37■■■□□ 2.45
USE1-208ENST00000600970 SUPT5HO00267 1087 aaKnown RBP30.36■■■□□ 2.45
USE1-208ENST00000600970 BIVM-ERCC5R4GMW8 1640 aa30.35■■■□□ 2.45
USE1-208ENST00000600970 TOP2BQ02880 1626 aa30.33■■■□□ 2.45
USE1-208ENST00000600970 SHROOM2Q13796 1616 aa30.31■■■□□ 2.44
USE1-208ENST00000600970 FHAD1B1AJZ9 1412 aa30.29■■■□□ 2.44
USE1-208ENST00000600970 ERICH3Q5RHP9 1530 aa30.23■■■□□ 2.43
USE1-208ENST00000600970 KIF13AQ9H1H9 1805 aa30.12■■■□□ 2.41
USE1-208ENST00000600970 PRG4Q92954 1404 aaPredicted RBP30.1■■■□□ 2.41
USE1-208ENST00000600970 JPH4Q96JJ6 628 aa30.06■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms