RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 NISCHQ9Y2I1 1504 aa43.65■■■■■ 4.58
SHKBP1-223ENST00000600552 ABCC9O60706 1549 aa39.22■■■■□ 3.87
SHKBP1-223ENST00000600552 CCDC180Q9P1Z9 1646 aa39.05■■■■□ 3.84
SHKBP1-223ENST00000600552 RB1CC1Q8TDY2 1594 aa37.22■■■■□ 3.55
SHKBP1-223ENST00000600552 DCAF8L2P0C7V8 631 aa37.19■■■■□ 3.54
SHKBP1-223ENST00000600552 NACADO15069 1562 aa36.94■■■■□ 3.5
SHKBP1-223ENST00000600552 DNAJC5BQ9UF47 199 aa36.72■■■■□ 3.47
SHKBP1-223ENST00000600552 PABPN1Q86U42 306 aaKnown RBP eCLIP36.62■■■■□ 3.45
SHKBP1-223ENST00000600552 UNC13AQ9UPW8 1703 aa36.39■■■■□ 3.42
SHKBP1-223ENST00000600552 MYO15BQ96JP2 1530 aa36.32■■■■□ 3.4
SHKBP1-223ENST00000600552 ZCCHC6Q5VYS8 1495 aaKnown RBP36.14■■■■□ 3.38
SHKBP1-223ENST00000600552 BICRAQ9NZM4 1560 aa36.1■■■■□ 3.37
SHKBP1-223ENST00000600552 DCAF1Q9Y4B6 1507 aa35.92■■■■□ 3.34
SHKBP1-223ENST00000600552 SCRIBQ14160 1630 aa35.79■■■■□ 3.32
SHKBP1-223ENST00000600552 SHROOM4Q9ULL8 1493 aa35.48■■■■□ 3.27
SHKBP1-223ENST00000600552 CC2D2AQ9P2K1 1620 aa35.34■■■■□ 3.25
SHKBP1-223ENST00000600552 CECR2Q9BXF3 1484 aa35.26■■■■□ 3.23
SHKBP1-223ENST00000600552 EIF4G1Q04637 1599 aaKnown RBP35.25■■■■□ 3.23
SHKBP1-223ENST00000600552 NCAPD3P42695 1498 aa34.1■■■■□ 3.05
SHKBP1-223ENST00000600552 ATAD2BQ9ULI0 1458 aa34.06■■■■□ 3.04
SHKBP1-223ENST00000600552 SMARCA4P51532 1647 aa34.04■■■■□ 3.04
SHKBP1-223ENST00000600552 SMARCA2P51531 1590 aa33.95■■■■□ 3.03
SHKBP1-223ENST00000600552 BAZ1AQ9NRL2 1556 aaPredicted RBP33.87■■■■□ 3.01
SHKBP1-223ENST00000600552 ERCC6Q03468 1493 aa33.86■■■■□ 3.01
SHKBP1-223ENST00000600552 HMGXB3Q12766 1538 aa33.83■■■■□ 3.01
SHKBP1-223ENST00000600552 BAZ1BQ9UIG0 1483 aaKnown RBP33.79■■■■□ 3
SHKBP1-223ENST00000600552 NESP48681 1621 aa33.69■■■□□ 2.98
SHKBP1-223ENST00000600552 MROH2BQ7Z745 1585 aa33.68■■■□□ 2.98
SHKBP1-223ENST00000600552 DNAJC5Q9H3Z4 198 aa33.62■■■□□ 2.97
SHKBP1-223ENST00000600552 CUX2O14529 1486 aa33.61■■■□□ 2.97
SHKBP1-223ENST00000600552 PEG3Q9GZU2 1588 aa33.58■■■□□ 2.97
SHKBP1-223ENST00000600552 LAMC3Q9Y6N6 1575 aa33.33■■■□□ 2.93
SHKBP1-223ENST00000600552 WIZO95785 1651 aa33.32■■■□□ 2.92
SHKBP1-223ENST00000600552 KIF21AQ7Z4S6 1674 aa33.21■■■□□ 2.91
SHKBP1-223ENST00000600552 PDS5BQ9NTI5 1447 aa33.2■■■□□ 2.91
SHKBP1-223ENST00000600552 THOC2Q8NI27 1593 aaKnown RBP33.2■■■□□ 2.91
SHKBP1-223ENST00000600552 CADPSQ9ULU8 1353 aa33.14■■■□□ 2.9
SHKBP1-223ENST00000600552 RSF1Q96T23 1441 aaPredicted RBP33.01■■■□□ 2.87
SHKBP1-223ENST00000600552 MRC2Q9UBG0 1479 aa32.91■■■□□ 2.86
SHKBP1-223ENST00000600552 TOP2AP11388 1531 aaKnown RBP32.82■■■□□ 2.85
SHKBP1-223ENST00000600552 CEP164Q9UPV0 1460 aa32.81■■■□□ 2.84
SHKBP1-223ENST00000600552 FANCD2Q9BXW9 1451 aa32.79■■■□□ 2.84
SHKBP1-223ENST00000600552 WDR62O43379 1518 aa32.76■■■□□ 2.83
SHKBP1-223ENST00000600552 CFTRP13569 1480 aa32.73■■■□□ 2.83
SHKBP1-223ENST00000600552 CCDC88BA6NC98 1476 aa32.52■■■□□ 2.8
SHKBP1-223ENST00000600552 URB2Q14146 1524 aaKnown RBP32.5■■■□□ 2.79
SHKBP1-223ENST00000600552 TRIM41Q8WV44 630 aa32.39■■■□□ 2.78
SHKBP1-223ENST00000600552 PRDM2Q13029 1718 aa32.39■■■□□ 2.78
SHKBP1-223ENST00000600552 OSCARQ8IYS5 282 aa32.25■■■□□ 2.75
SHKBP1-223ENST00000600552 TOPBP1Q92547 1522 aa32.16■■■□□ 2.74
SHKBP1-223ENST00000600552 ZNF608Q9ULD9 1512 aaPredicted RBP32.12■■■□□ 2.73
SHKBP1-223ENST00000600552 IFT140Q96RY7 1462 aa32.12■■■□□ 2.73
SHKBP1-223ENST00000600552 ABCC8Q09428 1581 aa32.04■■■□□ 2.72
SHKBP1-223ENST00000600552 DNMBPQ6XZF7 1577 aa32.02■■■□□ 2.72
SHKBP1-223ENST00000600552 EIF4G3O43432 1585 aaKnown RBP31.9■■■□□ 2.7
SHKBP1-223ENST00000600552 AQRO60306 1485 aaKnown RBP eCLIP31.89■■■□□ 2.7
SHKBP1-223ENST00000600552 SUPT5HO00267 1087 aaKnown RBP31.88■■■□□ 2.69
SHKBP1-223ENST00000600552 POLA1P09884 1462 aaPredicted RBP31.83■■■□□ 2.69
SHKBP1-223ENST00000600552 FBLN2P98095 1184 aa31.82■■■□□ 2.68
SHKBP1-223ENST00000600552 TARBP1Q13395 1621 aaKnown RBP31.82■■■□□ 2.68
SHKBP1-223ENST00000600552 RAD54L2Q9Y4B4 1467 aa31.8■■■□□ 2.68
SHKBP1-223ENST00000600552 SOGA1O94964 1423 aa31.75■■■□□ 2.67
SHKBP1-223ENST00000600552 RIMBP3CA6NJZ7 1639 aa31.75■■■□□ 2.67
SHKBP1-223ENST00000600552 RIMBP3BA6NNM3 1639 aa31.75■■■□□ 2.67
SHKBP1-223ENST00000600552 RIMBP3Q9UFD9 1639 aa31.75■■■□□ 2.67
SHKBP1-223ENST00000600552 TDRD9Q8NDG6 1382 aaKnown RBP31.73■■■□□ 2.67
SHKBP1-223ENST00000600552 CHD1O14646 1710 aa31.69■■■□□ 2.66
SHKBP1-223ENST00000600552 FGD5Q6ZNL6 1462 aa31.67■■■□□ 2.66
SHKBP1-223ENST00000600552 CUX1P39880 1505 aa31.64■■■□□ 2.66
SHKBP1-223ENST00000600552 ARHGEF11O15085 1522 aa31.63■■■□□ 2.65
SHKBP1-223ENST00000600552 CYB5RLQ6IPT4 315 aa31.57■■■□□ 2.64
SHKBP1-223ENST00000600552 SNAPC4Q5SXM2 1469 aa31.52■■■□□ 2.64
SHKBP1-223ENST00000600552 CHMP7Q8WUX9 453 aaPredicted RBP31.5■■■□□ 2.63
SHKBP1-223ENST00000600552 GRIN2BQ13224 1484 aa31.41■■■□□ 2.62
SHKBP1-223ENST00000600552 WDR97A6NE52 1622 aa31.4■■■□□ 2.62
SHKBP1-223ENST00000600552 MAGI1Q96QZ7 1491 aaPredicted RBP31.35■■■□□ 2.61
SHKBP1-223ENST00000600552 GAPVD1Q14C86 1478 aa31.34■■■□□ 2.61
SHKBP1-223ENST00000600552 ARAP1Q96P48 1450 aa31.33■■■□□ 2.61
SHKBP1-223ENST00000600552 PBRM1Q86U86 1689 aa31.29■■■□□ 2.6
SHKBP1-223ENST00000600552 SYNJ1O43426 1573 aa31.28■■■□□ 2.6
SHKBP1-223ENST00000600552 SYNJ2O15056 1496 aa31.27■■■□□ 2.6
SHKBP1-223ENST00000600552 TRHP20396 242 aaPredicted RBP31.27■■■□□ 2.6
SHKBP1-223ENST00000600552 ABCA10Q8WWZ4 1543 aa31.24■■■□□ 2.59
SHKBP1-223ENST00000600552 CLASP1Q7Z460 1538 aa31.24■■■□□ 2.59
SHKBP1-223ENST00000600552 WRNQ14191 1432 aaPredicted RBP eCLIP31.2■■■□□ 2.59
SHKBP1-223ENST00000600552 ABCA5Q8WWZ7 1642 aa31.17■■■□□ 2.58
SHKBP1-223ENST00000600552 TOP2BQ02880 1626 aa31.1■■■□□ 2.57
SHKBP1-223ENST00000600552 BIVM-ERCC5R4GMW8 1640 aa31.09■■■□□ 2.57
SHKBP1-223ENST00000600552 GRIN2AQ12879 1464 aa31■■■□□ 2.55
SHKBP1-223ENST00000600552 ADAMTS12P58397 1594 aa30.97■■■□□ 2.55
SHKBP1-223ENST00000600552 FHAD1B1AJZ9 1412 aa30.91■■■□□ 2.54
SHKBP1-223ENST00000600552 CEP170Q5SW79 1584 aa30.89■■■□□ 2.54
SHKBP1-223ENST00000600552 ERCC6L2Q5T890 1561 aa30.87■■■□□ 2.53
SHKBP1-223ENST00000600552 ERICH3Q5RHP9 1530 aa30.84■■■□□ 2.53
SHKBP1-223ENST00000600552 NUP160Q12769 1436 aa30.84■■■□□ 2.53
SHKBP1-223ENST00000600552 SHROOM2Q13796 1616 aa30.67■■■□□ 2.5
SHKBP1-223ENST00000600552 JPH4Q96JJ6 628 aa30.67■■■□□ 2.5
SHKBP1-223ENST00000600552 PRG4Q92954 1404 aaPredicted RBP30.66■■■□□ 2.5
SHKBP1-223ENST00000600552 KIF27Q86VH2 1401 aa30.57■■■□□ 2.48
SHKBP1-223ENST00000600552 IGF1RP08069 1367 aa30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms