RNA–Protein interactions for RNA: ENST00000600190.1

FARP1-229, Transcript of FERM, ARH/RhoGEF and pleckstrin domain protein 1, humanhuman

TSL 3

Gene FARP1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FARP1-229ENST00000600190 NISCHQ9Y2I1 1504 aa47.15■■■■■ 5.14
FARP1-229ENST00000600190 ABCC9O60706 1549 aa42.48■■■■■ 4.39
FARP1-229ENST00000600190 CCDC180Q9P1Z9 1646 aa42.3■■■■■ 4.36
FARP1-229ENST00000600190 RB1CC1Q8TDY2 1594 aa40.35■■■■■ 4.05
FARP1-229ENST00000600190 NACADO15069 1562 aa40.04■■■■■ 4
FARP1-229ENST00000600190 DCAF8L2P0C7V8 631 aa40.02■■■■■ 4
FARP1-229ENST00000600190 DNAJC5BQ9UF47 199 aa39.93■■■■□ 3.98
FARP1-229ENST00000600190 PABPN1Q86U42 306 aaKnown RBP eCLIP39.59■■■■□ 3.93
FARP1-229ENST00000600190 UNC13AQ9UPW8 1703 aa39.43■■■■□ 3.9
FARP1-229ENST00000600190 MYO15BQ96JP2 1530 aa39.41■■■■□ 3.9
FARP1-229ENST00000600190 BICRAQ9NZM4 1560 aa39.16■■■■□ 3.86
FARP1-229ENST00000600190 ZCCHC6Q5VYS8 1495 aaKnown RBP39.04■■■■□ 3.84
FARP1-229ENST00000600190 DCAF1Q9Y4B6 1507 aa38.89■■■■□ 3.82
FARP1-229ENST00000600190 SCRIBQ14160 1630 aa38.62■■■■□ 3.77
FARP1-229ENST00000600190 SHROOM4Q9ULL8 1493 aa38.57■■■■□ 3.76
FARP1-229ENST00000600190 CC2D2AQ9P2K1 1620 aa38.34■■■■□ 3.73
FARP1-229ENST00000600190 CECR2Q9BXF3 1484 aa38.25■■■■□ 3.71
FARP1-229ENST00000600190 EIF4G1Q04637 1599 aaKnown RBP38.23■■■■□ 3.71
FARP1-229ENST00000600190 NCAPD3P42695 1498 aa36.97■■■■□ 3.51
FARP1-229ENST00000600190 ATAD2BQ9ULI0 1458 aa36.86■■■■□ 3.49
FARP1-229ENST00000600190 SMARCA4P51532 1647 aa36.8■■■■□ 3.48
FARP1-229ENST00000600190 SMARCA2P51531 1590 aa36.74■■■■□ 3.47
FARP1-229ENST00000600190 DNAJC5Q9H3Z4 198 aa36.71■■■■□ 3.47
FARP1-229ENST00000600190 ERCC6Q03468 1493 aa36.69■■■■□ 3.46
FARP1-229ENST00000600190 HMGXB3Q12766 1538 aa36.66■■■■□ 3.46
FARP1-229ENST00000600190 BAZ1AQ9NRL2 1556 aaPredicted RBP36.61■■■■□ 3.45
FARP1-229ENST00000600190 CUX2O14529 1486 aa36.58■■■■□ 3.45
FARP1-229ENST00000600190 BAZ1BQ9UIG0 1483 aaKnown RBP36.52■■■■□ 3.44
FARP1-229ENST00000600190 NESP48681 1621 aa36.46■■■■□ 3.43
FARP1-229ENST00000600190 PEG3Q9GZU2 1588 aa36.4■■■■□ 3.42
FARP1-229ENST00000600190 MROH2BQ7Z745 1585 aa36.35■■■■□ 3.41
FARP1-229ENST00000600190 LAMC3Q9Y6N6 1575 aa36.15■■■■□ 3.38
FARP1-229ENST00000600190 THOC2Q8NI27 1593 aaKnown RBP36.05■■■■□ 3.36
FARP1-229ENST00000600190 PDS5BQ9NTI5 1447 aa35.99■■■■□ 3.35
FARP1-229ENST00000600190 KIF21AQ7Z4S6 1674 aa35.96■■■■□ 3.35
FARP1-229ENST00000600190 WIZO95785 1651 aa35.92■■■■□ 3.34
FARP1-229ENST00000600190 CADPSQ9ULU8 1353 aa35.88■■■■□ 3.33
FARP1-229ENST00000600190 MRC2Q9UBG0 1479 aa35.66■■■■□ 3.3
FARP1-229ENST00000600190 RSF1Q96T23 1441 aaPredicted RBP35.57■■■■□ 3.29
FARP1-229ENST00000600190 WDR62O43379 1518 aa35.55■■■■□ 3.28
FARP1-229ENST00000600190 CEP164Q9UPV0 1460 aa35.51■■■■□ 3.28
FARP1-229ENST00000600190 FANCD2Q9BXW9 1451 aa35.47■■■■□ 3.27
FARP1-229ENST00000600190 TOP2AP11388 1531 aaKnown RBP35.42■■■■□ 3.26
FARP1-229ENST00000600190 CFTRP13569 1480 aa35.42■■■■□ 3.26
FARP1-229ENST00000600190 URB2Q14146 1524 aaKnown RBP35.16■■■■□ 3.22
FARP1-229ENST00000600190 TRIM41Q8WV44 630 aa35.15■■■■□ 3.22
FARP1-229ENST00000600190 CCDC88BA6NC98 1476 aa35.07■■■■□ 3.2
FARP1-229ENST00000600190 PRDM2Q13029 1718 aa35.03■■■■□ 3.2
FARP1-229ENST00000600190 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
FARP1-229ENST00000600190 IFT140Q96RY7 1462 aa34.79■■■■□ 3.16
FARP1-229ENST00000600190 TOPBP1Q92547 1522 aa34.78■■■■□ 3.16
FARP1-229ENST00000600190 ZNF608Q9ULD9 1512 aaPredicted RBP34.76■■■■□ 3.16
FARP1-229ENST00000600190 ABCC8Q09428 1581 aa34.69■■■■□ 3.14
FARP1-229ENST00000600190 DNMBPQ6XZF7 1577 aa34.63■■■■□ 3.13
FARP1-229ENST00000600190 EIF4G3O43432 1585 aaKnown RBP34.54■■■■□ 3.12
FARP1-229ENST00000600190 RIMBP3CA6NJZ7 1639 aa34.48■■■■□ 3.11
FARP1-229ENST00000600190 RIMBP3BA6NNM3 1639 aa34.48■■■■□ 3.11
FARP1-229ENST00000600190 RIMBP3Q9UFD9 1639 aa34.48■■■■□ 3.11
FARP1-229ENST00000600190 AQRO60306 1485 aaKnown RBP eCLIP34.47■■■■□ 3.113e-20■■■■■ 78.4
FARP1-229ENST00000600190 TARBP1Q13395 1621 aaKnown RBP34.46■■■■□ 3.11
FARP1-229ENST00000600190 POLA1P09884 1462 aaPredicted RBP34.41■■■■□ 3.1
FARP1-229ENST00000600190 ARHGEF11O15085 1522 aa34.36■■■■□ 3.09
FARP1-229ENST00000600190 FBLN2P98095 1184 aa34.34■■■■□ 3.09
FARP1-229ENST00000600190 RAD54L2Q9Y4B4 1467 aa34.33■■■■□ 3.09
FARP1-229ENST00000600190 CHD1O14646 1710 aa34.31■■■■□ 3.08
FARP1-229ENST00000600190 SOGA1O94964 1423 aa34.3■■■■□ 3.08
FARP1-229ENST00000600190 TDRD9Q8NDG6 1382 aaKnown RBP34.25■■■■□ 3.07
FARP1-229ENST00000600190 FGD5Q6ZNL6 1462 aa34.2■■■■□ 3.07
FARP1-229ENST00000600190 CYB5RLQ6IPT4 315 aa34.2■■■■□ 3.07
FARP1-229ENST00000600190 CUX1P39880 1505 aa34.15■■■■□ 3.06
FARP1-229ENST00000600190 SNAPC4Q5SXM2 1469 aa34.08■■■■□ 3.05
FARP1-229ENST00000600190 WDR97A6NE52 1622 aa34.06■■■■□ 3.04
FARP1-229ENST00000600190 SUPT5HO00267 1087 aaKnown RBP34.06■■■■□ 3.04
FARP1-229ENST00000600190 CHMP7Q8WUX9 453 aaPredicted RBP34.03■■■■□ 3.04
FARP1-229ENST00000600190 ARAP1Q96P48 1450 aa34.01■■■■□ 3.04
FARP1-229ENST00000600190 GRIN2BQ13224 1484 aa33.98■■■■□ 3.03
FARP1-229ENST00000600190 MAGI1Q96QZ7 1491 aaPredicted RBP33.96■■■■□ 3.03
FARP1-229ENST00000600190 SYNJ1O43426 1573 aa33.89■■■■□ 3.02
FARP1-229ENST00000600190 CLASP1Q7Z460 1538 aa33.89■■■■□ 3.02
FARP1-229ENST00000600190 TRHP20396 242 aaPredicted RBP33.88■■■■□ 3.01
FARP1-229ENST00000600190 SYNJ2O15056 1496 aa33.87■■■■□ 3.01
FARP1-229ENST00000600190 GAPVD1Q14C86 1478 aa33.87■■■■□ 3.01
FARP1-229ENST00000600190 PBRM1Q86U86 1689 aa33.83■■■■□ 3.01
FARP1-229ENST00000600190 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
FARP1-229ENST00000600190 ABCA5Q8WWZ7 1642 aa33.72■■■□□ 2.99
FARP1-229ENST00000600190 WRNQ14191 1432 aaPredicted RBP eCLIP33.67■■■□□ 2.98
FARP1-229ENST00000600190 TOP2BQ02880 1626 aa33.57■■■□□ 2.97
FARP1-229ENST00000600190 BIVM-ERCC5R4GMW8 1640 aa33.56■■■□□ 2.96
FARP1-229ENST00000600190 GRIN2AQ12879 1464 aa33.54■■■□□ 2.96
FARP1-229ENST00000600190 ADAMTS12P58397 1594 aa33.49■■■□□ 2.95
FARP1-229ENST00000600190 FHAD1B1AJZ9 1412 aa33.42■■■□□ 2.94
FARP1-229ENST00000600190 CEP170Q5SW79 1584 aa33.42■■■□□ 2.94
FARP1-229ENST00000600190 NUP160Q12769 1436 aa33.41■■■□□ 2.94
FARP1-229ENST00000600190 ERCC6L2Q5T890 1561 aa33.4■■■□□ 2.94
FARP1-229ENST00000600190 ERICH3Q5RHP9 1530 aa33.36■■■□□ 2.93
FARP1-229ENST00000600190 SHROOM2Q13796 1616 aa33.25■■■□□ 2.91
FARP1-229ENST00000600190 PRG4Q92954 1404 aaPredicted RBP33.15■■■□□ 2.9
FARP1-229ENST00000600190 JPH4Q96JJ6 628 aa33.14■■■□□ 2.9
FARP1-229ENST00000600190 RUSC2Q8N2Y8 1516 aa33.02■■■□□ 2.88
FARP1-229ENST00000600190 IGF1RP08069 1367 aa32.96■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms