RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 NISCHQ9Y2I1 1504 aa36.89■■■■□ 3.5
LIG1-219ENST00000600055 CCDC180Q9P1Z9 1646 aa32.69■■■□□ 2.82
LIG1-219ENST00000600055 ABCC9O60706 1549 aa32.1■■■□□ 2.73
LIG1-219ENST00000600055 DCAF8L2P0C7V8 631 aa30.92■■■□□ 2.54
LIG1-219ENST00000600055 RB1CC1Q8TDY2 1594 aa30.8■■■□□ 2.52
LIG1-219ENST00000600055 NACADO15069 1562 aa30.77■■■□□ 2.52
LIG1-219ENST00000600055 ZCCHC6Q5VYS8 1495 aaKnown RBP30.73■■■□□ 2.51
LIG1-219ENST00000600055 MYO15BQ96JP2 1530 aa30.57■■■□□ 2.48
LIG1-219ENST00000600055 DCAF1Q9Y4B6 1507 aa30.47■■■□□ 2.47
LIG1-219ENST00000600055 UNC13AQ9UPW8 1703 aa30.09■■■□□ 2.41
LIG1-219ENST00000600055 PABPN1Q86U42 306 aaKnown RBP eCLIP30.06■■■□□ 2.4
LIG1-219ENST00000600055 SCRIBQ14160 1630 aa29.94■■■□□ 2.38
LIG1-219ENST00000600055 BICRAQ9NZM4 1560 aa29.92■■■□□ 2.38
LIG1-219ENST00000600055 DNAJC5BQ9UF47 199 aa29.52■■■□□ 2.32
LIG1-219ENST00000600055 SHROOM4Q9ULL8 1493 aa29.5■■■□□ 2.31
LIG1-219ENST00000600055 EIF4G1Q04637 1599 aaKnown RBP29.11■■■□□ 2.25
LIG1-219ENST00000600055 CC2D2AQ9P2K1 1620 aa28.99■■■□□ 2.23
LIG1-219ENST00000600055 CECR2Q9BXF3 1484 aa28.82■■■□□ 2.2
LIG1-219ENST00000600055 SMARCA4P51532 1647 aa28.6■■■□□ 2.17
LIG1-219ENST00000600055 BAZ1AQ9NRL2 1556 aaPredicted RBP28.56■■■□□ 2.16
LIG1-219ENST00000600055 ATAD2BQ9ULI0 1458 aa28.47■■■□□ 2.15
LIG1-219ENST00000600055 MROH2BQ7Z745 1585 aa28.47■■■□□ 2.15
LIG1-219ENST00000600055 NCAPD3P42695 1498 aa28.43■■■□□ 2.14
LIG1-219ENST00000600055 SMARCA2P51531 1590 aa28.38■■■□□ 2.13
LIG1-219ENST00000600055 PEG3Q9GZU2 1588 aa28.28■■■□□ 2.12
LIG1-219ENST00000600055 HMGXB3Q12766 1538 aa28.26■■■□□ 2.11
LIG1-219ENST00000600055 BAZ1BQ9UIG0 1483 aaKnown RBP28.23■■■□□ 2.11
LIG1-219ENST00000600055 RSF1Q96T23 1441 aaPredicted RBP28.16■■■□□ 2.1
LIG1-219ENST00000600055 WIZO95785 1651 aa28.14■■■□□ 2.1
LIG1-219ENST00000600055 TOP2AP11388 1531 aaKnown RBP27.82■■■□□ 2.04
LIG1-219ENST00000600055 NESP48681 1621 aa27.81■■■□□ 2.04
LIG1-219ENST00000600055 LAMC3Q9Y6N6 1575 aa27.64■■■□□ 2.01
LIG1-219ENST00000600055 ERCC6Q03468 1493 aa27.64■■■□□ 2.01
LIG1-219ENST00000600055 CADPSQ9ULU8 1353 aa27.63■■■□□ 2.01
LIG1-219ENST00000600055 CCDC88BA6NC98 1476 aa27.54■■■□□ 2
LIG1-219ENST00000600055 SUPT5HO00267 1087 aaKnown RBP27.53■■■□□ 2
LIG1-219ENST00000600055 PDS5BQ9NTI5 1447 aa27.49■■□□□ 1.99
LIG1-219ENST00000600055 CFTRP13569 1480 aa27.45■■□□□ 1.99
LIG1-219ENST00000600055 KIF21AQ7Z4S6 1674 aa27.4■■□□□ 1.98
LIG1-219ENST00000600055 FANCD2Q9BXW9 1451 aa27.31■■□□□ 1.96
LIG1-219ENST00000600055 THOC2Q8NI27 1593 aaKnown RBP27.31■■□□□ 1.96
LIG1-219ENST00000600055 CUX2O14529 1486 aa27.3■■□□□ 1.96
LIG1-219ENST00000600055 CEP164Q9UPV0 1460 aa27.25■■□□□ 1.95
LIG1-219ENST00000600055 MRC2Q9UBG0 1479 aa27.21■■□□□ 1.95
LIG1-219ENST00000600055 PRDM2Q13029 1718 aa27.13■■□□□ 1.93
LIG1-219ENST00000600055 WDR62O43379 1518 aa27.11■■□□□ 1.93
LIG1-219ENST00000600055 URB2Q14146 1524 aaKnown RBP27.05■■□□□ 1.92
LIG1-219ENST00000600055 TOPBP1Q92547 1522 aa26.87■■□□□ 1.89
LIG1-219ENST00000600055 DNMBPQ6XZF7 1577 aa26.81■■□□□ 1.88
LIG1-219ENST00000600055 ABCC8Q09428 1581 aa26.8■■□□□ 1.88
LIG1-219ENST00000600055 CUX1P39880 1505 aa26.7■■□□□ 1.86
LIG1-219ENST00000600055 IFT140Q96RY7 1462 aa26.68■■□□□ 1.86
LIG1-219ENST00000600055 POLA1P09884 1462 aaPredicted RBP26.65■■□□□ 1.86
LIG1-219ENST00000600055 ZNF608Q9ULD9 1512 aaPredicted RBP26.61■■□□□ 1.85
LIG1-219ENST00000600055 FGD5Q6ZNL6 1462 aa26.6■■□□□ 1.85
LIG1-219ENST00000600055 RAD54L2Q9Y4B4 1467 aa26.58■■□□□ 1.85
LIG1-219ENST00000600055 SOGA1O94964 1423 aa26.56■■□□□ 1.84
LIG1-219ENST00000600055 TARBP1Q13395 1621 aaKnown RBP26.55■■□□□ 1.84
LIG1-219ENST00000600055 WRNQ14191 1432 aaPredicted RBP eCLIP26.53■■□□□ 1.84
LIG1-219ENST00000600055 DNAJC5Q9H3Z4 198 aa26.49■■□□□ 1.83
LIG1-219ENST00000600055 AQRO60306 1485 aaKnown RBP eCLIP26.48■■□□□ 1.832e-6■■■■□ 23.2
LIG1-219ENST00000600055 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
LIG1-219ENST00000600055 EIF4G3O43432 1585 aaKnown RBP26.45■■□□□ 1.82
LIG1-219ENST00000600055 TDRD9Q8NDG6 1382 aaKnown RBP26.44■■□□□ 1.82
LIG1-219ENST00000600055 TOP2BQ02880 1626 aa26.43■■□□□ 1.82
LIG1-219ENST00000600055 BIVM-ERCC5R4GMW8 1640 aa26.41■■□□□ 1.82
LIG1-219ENST00000600055 ABCA10Q8WWZ4 1543 aa26.31■■□□□ 1.8
LIG1-219ENST00000600055 WDR97A6NE52 1622 aa26.31■■□□□ 1.8
LIG1-219ENST00000600055 GAPVD1Q14C86 1478 aa26.23■■□□□ 1.79
LIG1-219ENST00000600055 OSCARQ8IYS5 282 aa26.23■■□□□ 1.79
LIG1-219ENST00000600055 GRIN2BQ13224 1484 aa26.21■■□□□ 1.79
LIG1-219ENST00000600055 SNAPC4Q5SXM2 1469 aa26.2■■□□□ 1.78
LIG1-219ENST00000600055 ABCA5Q8WWZ7 1642 aa26.19■■□□□ 1.78
LIG1-219ENST00000600055 FBLN2P98095 1184 aa26.17■■□□□ 1.78
LIG1-219ENST00000600055 PBRM1Q86U86 1689 aa26.12■■□□□ 1.77
LIG1-219ENST00000600055 MAGI1Q96QZ7 1491 aaPredicted RBP26.11■■□□□ 1.77
LIG1-219ENST00000600055 CHD1O14646 1710 aa26.09■■□□□ 1.77
LIG1-219ENST00000600055 CHMP7Q8WUX9 453 aaPredicted RBP26.07■■□□□ 1.76
LIG1-219ENST00000600055 SYNJ2O15056 1496 aa26.04■■□□□ 1.76
LIG1-219ENST00000600055 ERICH3Q5RHP9 1530 aa25.98■■□□□ 1.75
LIG1-219ENST00000600055 TRIM41Q8WV44 630 aa25.96■■□□□ 1.75
LIG1-219ENST00000600055 KIF27Q86VH2 1401 aa25.96■■□□□ 1.75
LIG1-219ENST00000600055 ADAMTS12P58397 1594 aa25.95■■□□□ 1.75
LIG1-219ENST00000600055 FHAD1B1AJZ9 1412 aa25.92■■□□□ 1.74
LIG1-219ENST00000600055 IGF1RP08069 1367 aa25.89■■□□□ 1.74
LIG1-219ENST00000600055 GRIN2AQ12879 1464 aa25.88■■□□□ 1.73
LIG1-219ENST00000600055 CLASP1Q7Z460 1538 aa25.83■■□□□ 1.73
LIG1-219ENST00000600055 RUSC2Q8N2Y8 1516 aa25.81■■□□□ 1.72
LIG1-219ENST00000600055 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
LIG1-219ENST00000600055 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
LIG1-219ENST00000600055 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
LIG1-219ENST00000600055 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
LIG1-219ENST00000600055 NUP160Q12769 1436 aa25.77■■□□□ 1.72
LIG1-219ENST00000600055 CEP170Q5SW79 1584 aa25.76■■□□□ 1.71
LIG1-219ENST00000600055 CARMIL1Q5VZK9 1371 aa25.73■■□□□ 1.71
LIG1-219ENST00000600055 CUL7Q14999 1698 aa25.72■■□□□ 1.71
LIG1-219ENST00000600055 CHIC1Q5VXU3 224 aa25.7■■□□□ 1.7
LIG1-219ENST00000600055 ARAP1Q96P48 1450 aa25.6■■□□□ 1.69
LIG1-219ENST00000600055 CYB5RLQ6IPT4 315 aa25.6■■□□□ 1.69
LIG1-219ENST00000600055 RAPGEF2Q9Y4G8 1499 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms