RNA–Protein interactions for RNA: ENST00000600006.5

CHMP2A-205, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-205ENST00000600006 NISCHQ9Y2I1 1504 aa19.72■□□□□ 0.75
CHMP2A-205ENST00000600006 CCDC180Q9P1Z9 1646 aa17.66■□□□□ 0.42
CHMP2A-205ENST00000600006 ABCC9O60706 1549 aa17.25■□□□□ 0.35
CHMP2A-205ENST00000600006 RB1CC1Q8TDY2 1594 aa16.61■□□□□ 0.25
CHMP2A-205ENST00000600006 NACADO15069 1562 aa16.57■□□□□ 0.24
CHMP2A-205ENST00000600006 MYO15BQ96JP2 1530 aa16.46■□□□□ 0.23
CHMP2A-205ENST00000600006 ZCCHC6Q5VYS8 1495 aaKnown RBP16.44■□□□□ 0.22
CHMP2A-205ENST00000600006 DCAF1Q9Y4B6 1507 aa16.35■□□□□ 0.21
CHMP2A-205ENST00000600006 DCAF8L2P0C7V8 631 aa16.34■□□□□ 0.21
CHMP2A-205ENST00000600006 UNC13AQ9UPW8 1703 aa16.29■□□□□ 0.2
CHMP2A-205ENST00000600006 BICRAQ9NZM4 1560 aa16.13■□□□□ 0.17
CHMP2A-205ENST00000600006 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
CHMP2A-205ENST00000600006 PABPN1Q86U42 306 aaKnown RBP eCLIP16.03■□□□□ 0.16
CHMP2A-205ENST00000600006 SHROOM4Q9ULL8 1493 aa15.97■□□□□ 0.15
CHMP2A-205ENST00000600006 DNAJC5BQ9UF47 199 aa15.86■□□□□ 0.13
CHMP2A-205ENST00000600006 EIF4G1Q04637 1599 aaKnown RBP15.69■□□□□ 0.1
CHMP2A-205ENST00000600006 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
CHMP2A-205ENST00000600006 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.07
CHMP2A-205ENST00000600006 SMARCA4P51532 1647 aa15.35■□□□□ 0.05
CHMP2A-205ENST00000600006 BAZ1AQ9NRL2 1556 aaPredicted RBP15.31■□□□□ 0.04
CHMP2A-205ENST00000600006 NCAPD3P42695 1498 aa15.27■□□□□ 0.03
CHMP2A-205ENST00000600006 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
CHMP2A-205ENST00000600006 ATAD2BQ9ULI0 1458 aa15.25■□□□□ 0.03
CHMP2A-205ENST00000600006 PEG3Q9GZU2 1588 aa15.23■□□□□ 0.03
CHMP2A-205ENST00000600006 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
CHMP2A-205ENST00000600006 MROH2BQ7Z745 1585 aa15.19■□□□□ 0.02
CHMP2A-205ENST00000600006 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
CHMP2A-205ENST00000600006 WIZO95785 1651 aa15.04■□□□□ -0
CHMP2A-205ENST00000600006 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
CHMP2A-205ENST00000600006 LAMC3Q9Y6N6 1575 aa14.91□□□□□ -0.02
CHMP2A-205ENST00000600006 NESP48681 1621 aa14.91□□□□□ -0.02
CHMP2A-205ENST00000600006 TOP2AP11388 1531 aaKnown RBP14.89□□□□□ -0.03
CHMP2A-205ENST00000600006 ERCC6Q03468 1493 aa14.87□□□□□ -0.03
CHMP2A-205ENST00000600006 KIF21AQ7Z4S6 1674 aa14.8□□□□□ -0.04
CHMP2A-205ENST00000600006 CUX2O14529 1486 aa14.79□□□□□ -0.04
CHMP2A-205ENST00000600006 THOC2Q8NI27 1593 aaKnown RBP14.78□□□□□ -0.04
CHMP2A-205ENST00000600006 CADPSQ9ULU8 1353 aa14.78□□□□□ -0.04
CHMP2A-205ENST00000600006 PDS5BQ9NTI5 1447 aa14.75□□□□□ -0.05
CHMP2A-205ENST00000600006 CFTRP13569 1480 aa14.7□□□□□ -0.06
CHMP2A-205ENST00000600006 PRDM2Q13029 1718 aa14.69□□□□□ -0.06
CHMP2A-205ENST00000600006 CCDC88BA6NC98 1476 aa14.66□□□□□ -0.06
CHMP2A-205ENST00000600006 MRC2Q9UBG0 1479 aa14.63□□□□□ -0.07
CHMP2A-205ENST00000600006 CEP164Q9UPV0 1460 aa14.63□□□□□ -0.07
CHMP2A-205ENST00000600006 WDR62O43379 1518 aa14.63□□□□□ -0.07
CHMP2A-205ENST00000600006 FANCD2Q9BXW9 1451 aa14.63□□□□□ -0.07
CHMP2A-205ENST00000600006 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
CHMP2A-205ENST00000600006 TOPBP1Q92547 1522 aa14.41□□□□□ -0.1
CHMP2A-205ENST00000600006 DNMBPQ6XZF7 1577 aa14.4□□□□□ -0.1
CHMP2A-205ENST00000600006 SUPT5HO00267 1087 aaKnown RBP14.4□□□□□ -0.1
CHMP2A-205ENST00000600006 ABCC8Q09428 1581 aa14.39□□□□□ -0.11
CHMP2A-205ENST00000600006 DNAJC5Q9H3Z4 198 aa14.36□□□□□ -0.11
CHMP2A-205ENST00000600006 IFT140Q96RY7 1462 aa14.33□□□□□ -0.12
CHMP2A-205ENST00000600006 TARBP1Q13395 1621 aaKnown RBP14.29□□□□□ -0.12
CHMP2A-205ENST00000600006 POLA1P09884 1462 aaPredicted RBP14.27□□□□□ -0.12
CHMP2A-205ENST00000600006 EIF4G3O43432 1585 aaKnown RBP14.26□□□□□ -0.13
CHMP2A-205ENST00000600006 CUX1P39880 1505 aa14.26□□□□□ -0.13
CHMP2A-205ENST00000600006 ZNF608Q9ULD9 1512 aaPredicted RBP14.25□□□□□ -0.13
CHMP2A-205ENST00000600006 FGD5Q6ZNL6 1462 aa14.23□□□□□ -0.13
CHMP2A-205ENST00000600006 WDR97A6NE52 1622 aa14.2□□□□□ -0.14
CHMP2A-205ENST00000600006 RAD54L2Q9Y4B4 1467 aa14.18□□□□□ -0.14
CHMP2A-205ENST00000600006 BIVM-ERCC5R4GMW8 1640 aa14.17□□□□□ -0.14
CHMP2A-205ENST00000600006 SOGA1O94964 1423 aa14.16□□□□□ -0.14
CHMP2A-205ENST00000600006 TOP2BQ02880 1626 aa14.14□□□□□ -0.15
CHMP2A-205ENST00000600006 AQRO60306 1485 aaKnown RBP eCLIP14.13□□□□□ -0.156e-6■■□□□ 13.3
CHMP2A-205ENST00000600006 SYNJ1O43426 1573 aa14.13□□□□□ -0.15
CHMP2A-205ENST00000600006 CHD1O14646 1710 aa14.11□□□□□ -0.15
CHMP2A-205ENST00000600006 WRNQ14191 1432 aaPredicted RBP eCLIP14.11□□□□□ -0.15
CHMP2A-205ENST00000600006 ABCA5Q8WWZ7 1642 aa14.09□□□□□ -0.15
CHMP2A-205ENST00000600006 ABCA10Q8WWZ4 1543 aa14.09□□□□□ -0.15
CHMP2A-205ENST00000600006 PBRM1Q86U86 1689 aa14.08□□□□□ -0.16
CHMP2A-205ENST00000600006 TDRD9Q8NDG6 1382 aaKnown RBP14.08□□□□□ -0.16
CHMP2A-205ENST00000600006 OSCARQ8IYS5 282 aa14.06□□□□□ -0.16
CHMP2A-205ENST00000600006 GRIN2BQ13224 1484 aa14.05□□□□□ -0.16
CHMP2A-205ENST00000600006 SNAPC4Q5SXM2 1469 aa14.05□□□□□ -0.16
CHMP2A-205ENST00000600006 MAGI1Q96QZ7 1491 aaPredicted RBP14.05□□□□□ -0.16
CHMP2A-205ENST00000600006 GAPVD1Q14C86 1478 aa14.02□□□□□ -0.16
CHMP2A-205ENST00000600006 SYNJ2O15056 1496 aa13.98□□□□□ -0.17
CHMP2A-205ENST00000600006 RIMBP3CA6NJZ7 1639 aa13.96□□□□□ -0.17
CHMP2A-205ENST00000600006 RIMBP3BA6NNM3 1639 aa13.96□□□□□ -0.17
CHMP2A-205ENST00000600006 RIMBP3Q9UFD9 1639 aa13.96□□□□□ -0.17
CHMP2A-205ENST00000600006 ADAMTS12P58397 1594 aa13.96□□□□□ -0.18
CHMP2A-205ENST00000600006 CLASP1Q7Z460 1538 aa13.95□□□□□ -0.18
CHMP2A-205ENST00000600006 ARHGEF11O15085 1522 aa13.93□□□□□ -0.18
CHMP2A-205ENST00000600006 ERICH3Q5RHP9 1530 aa13.93□□□□□ -0.18
CHMP2A-205ENST00000600006 FBLN2P98095 1184 aa13.91□□□□□ -0.18
CHMP2A-205ENST00000600006 CHMP7Q8WUX9 453 aaPredicted RBP13.89□□□□□ -0.19
CHMP2A-205ENST00000600006 GRIN2AQ12879 1464 aa13.88□□□□□ -0.19
CHMP2A-205ENST00000600006 FHAD1B1AJZ9 1412 aa13.87□□□□□ -0.19
CHMP2A-205ENST00000600006 CEP170Q5SW79 1584 aa13.84□□□□□ -0.19
CHMP2A-205ENST00000600006 NUP160Q12769 1436 aa13.82□□□□□ -0.2
CHMP2A-205ENST00000600006 CUL7Q14999 1698 aa13.82□□□□□ -0.2
CHMP2A-205ENST00000600006 KIF27Q86VH2 1401 aa13.81□□□□□ -0.2
CHMP2A-205ENST00000600006 ARAP1Q96P48 1450 aa13.8□□□□□ -0.2
CHMP2A-205ENST00000600006 TRIM41Q8WV44 630 aa13.8□□□□□ -0.2
CHMP2A-205ENST00000600006 SHROOM2Q13796 1616 aa13.79□□□□□ -0.2
CHMP2A-205ENST00000600006 RUSC2Q8N2Y8 1516 aa13.76□□□□□ -0.21
CHMP2A-205ENST00000600006 IGF1RP08069 1367 aa13.74□□□□□ -0.21
CHMP2A-205ENST00000600006 ERCC6L2Q5T890 1561 aa13.71□□□□□ -0.21
CHMP2A-205ENST00000600006 CYB5RLQ6IPT4 315 aa13.69□□□□□ -0.22
CHMP2A-205ENST00000600006 CARMIL1Q5VZK9 1371 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms