RNA–Protein interactions for RNA: ENST00000599808.1

HOMER3-211, Transcript of homer scaffold protein 3, humanhuman

TSL 2

Gene HOMER3, Length 555 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-211ENST00000599808 NISCHQ9Y2I1 1504 aa31.46■■■□□ 2.63
HOMER3-211ENST00000599808 ABCC9O60706 1549 aa28.69■■■□□ 2.18
HOMER3-211ENST00000599808 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
HOMER3-211ENST00000599808 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
HOMER3-211ENST00000599808 RB1CC1Q8TDY2 1594 aa27.15■■□□□ 1.94
HOMER3-211ENST00000599808 NACADO15069 1562 aa26.89■■□□□ 1.9
HOMER3-211ENST00000599808 DCAF8L2P0C7V8 631 aa26.66■■□□□ 1.86
HOMER3-211ENST00000599808 PABPN1Q86U42 306 aaKnown RBP eCLIP26.64■■□□□ 1.86
HOMER3-211ENST00000599808 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
HOMER3-211ENST00000599808 BICRAQ9NZM4 1560 aa26.41■■□□□ 1.82
HOMER3-211ENST00000599808 MYO15BQ96JP2 1530 aa26.41■■□□□ 1.82
HOMER3-211ENST00000599808 ZCCHC6Q5VYS8 1495 aaKnown RBP26.01■■□□□ 1.75
HOMER3-211ENST00000599808 SHROOM4Q9ULL8 1493 aa25.97■■□□□ 1.75
HOMER3-211ENST00000599808 DCAF1Q9Y4B6 1507 aa25.96■■□□□ 1.75
HOMER3-211ENST00000599808 CC2D2AQ9P2K1 1620 aa25.91■■□□□ 1.74
HOMER3-211ENST00000599808 CECR2Q9BXF3 1484 aa25.86■■□□□ 1.73
HOMER3-211ENST00000599808 SCRIBQ14160 1630 aa25.85■■□□□ 1.73
HOMER3-211ENST00000599808 EIF4G1Q04637 1599 aaKnown RBP25.77■■□□□ 1.72
HOMER3-211ENST00000599808 DNAJC5Q9H3Z4 198 aa25.18■■□□□ 1.62
HOMER3-211ENST00000599808 CUX2O14529 1486 aa24.83■■□□□ 1.57
HOMER3-211ENST00000599808 NCAPD3P42695 1498 aa24.83■■□□□ 1.56
HOMER3-211ENST00000599808 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
HOMER3-211ENST00000599808 ATAD2BQ9ULI0 1458 aa24.71■■□□□ 1.55
HOMER3-211ENST00000599808 SMARCA4P51532 1647 aa24.63■■□□□ 1.53
HOMER3-211ENST00000599808 HMGXB3Q12766 1538 aa24.62■■□□□ 1.53
HOMER3-211ENST00000599808 SMARCA2P51531 1590 aa24.62■■□□□ 1.53
HOMER3-211ENST00000599808 NESP48681 1621 aa24.57■■□□□ 1.52
HOMER3-211ENST00000599808 BAZ1BQ9UIG0 1483 aaKnown RBP24.45■■□□□ 1.5
HOMER3-211ENST00000599808 BAZ1AQ9NRL2 1556 aaPredicted RBP24.43■■□□□ 1.5
HOMER3-211ENST00000599808 THOC2Q8NI27 1593 aaKnown RBP24.39■■□□□ 1.5
HOMER3-211ENST00000599808 PEG3Q9GZU2 1588 aa24.38■■□□□ 1.49
HOMER3-211ENST00000599808 LAMC3Q9Y6N6 1575 aa24.33■■□□□ 1.48
HOMER3-211ENST00000599808 KIF21AQ7Z4S6 1674 aa24.27■■□□□ 1.48
HOMER3-211ENST00000599808 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
HOMER3-211ENST00000599808 PDS5BQ9NTI5 1447 aa24.17■■□□□ 1.46
HOMER3-211ENST00000599808 CADPSQ9ULU8 1353 aa24.04■■□□□ 1.44
HOMER3-211ENST00000599808 MRC2Q9UBG0 1479 aa24■■□□□ 1.43
HOMER3-211ENST00000599808 WIZO95785 1651 aa23.96■■□□□ 1.43
HOMER3-211ENST00000599808 WDR62O43379 1518 aa23.96■■□□□ 1.43
HOMER3-211ENST00000599808 TRIM41Q8WV44 630 aa23.94■■□□□ 1.42
HOMER3-211ENST00000599808 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
HOMER3-211ENST00000599808 FANCD2Q9BXW9 1451 aa23.78■■□□□ 1.4
HOMER3-211ENST00000599808 CFTRP13569 1480 aa23.72■■□□□ 1.39
HOMER3-211ENST00000599808 OSCARQ8IYS5 282 aa23.63■■□□□ 1.37
HOMER3-211ENST00000599808 URB2Q14146 1524 aaKnown RBP23.63■■□□□ 1.37
HOMER3-211ENST00000599808 RSF1Q96T23 1441 aaPredicted RBP23.61■■□□□ 1.37
HOMER3-211ENST00000599808 TOP2AP11388 1531 aaKnown RBP23.61■■□□□ 1.37
HOMER3-211ENST00000599808 PRDM2Q13029 1718 aa23.53■■□□□ 1.36
HOMER3-211ENST00000599808 RIMBP3CA6NJZ7 1639 aa23.41■■□□□ 1.34
HOMER3-211ENST00000599808 RIMBP3BA6NNM3 1639 aa23.41■■□□□ 1.34
HOMER3-211ENST00000599808 RIMBP3Q9UFD9 1639 aa23.41■■□□□ 1.34
HOMER3-211ENST00000599808 ZNF608Q9ULD9 1512 aaPredicted RBP23.38■■□□□ 1.33
HOMER3-211ENST00000599808 IFT140Q96RY7 1462 aa23.36■■□□□ 1.33
HOMER3-211ENST00000599808 CCDC88BA6NC98 1476 aa23.35■■□□□ 1.33
HOMER3-211ENST00000599808 TOPBP1Q92547 1522 aa23.31■■□□□ 1.32
HOMER3-211ENST00000599808 ARHGEF11O15085 1522 aa23.28■■□□□ 1.32
HOMER3-211ENST00000599808 EIF4G3O43432 1585 aaKnown RBP23.26■■□□□ 1.31
HOMER3-211ENST00000599808 ABCC8Q09428 1581 aa23.21■■□□□ 1.31
HOMER3-211ENST00000599808 DNMBPQ6XZF7 1577 aa23.2■■□□□ 1.3
HOMER3-211ENST00000599808 CHD1O14646 1710 aa23.17■■□□□ 1.3
HOMER3-211ENST00000599808 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
HOMER3-211ENST00000599808 AQRO60306 1485 aaKnown RBP eCLIP23.12■■□□□ 1.29
HOMER3-211ENST00000599808 CYB5RLQ6IPT4 315 aa23.12■■□□□ 1.29
HOMER3-211ENST00000599808 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
HOMER3-211ENST00000599808 ARAP1Q96P48 1450 aa23.04■■□□□ 1.28
HOMER3-211ENST00000599808 FBLN2P98095 1184 aa23.01■■□□□ 1.27
HOMER3-211ENST00000599808 RAD54L2Q9Y4B4 1467 aa22.98■■□□□ 1.27
HOMER3-211ENST00000599808 TRHP20396 242 aaPredicted RBP22.95■■□□□ 1.26
HOMER3-211ENST00000599808 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
HOMER3-211ENST00000599808 SOGA1O94964 1423 aa22.92■■□□□ 1.26
HOMER3-211ENST00000599808 SNAPC4Q5SXM2 1469 aa22.88■■□□□ 1.25
HOMER3-211ENST00000599808 WDR97A6NE52 1622 aa22.86■■□□□ 1.25
HOMER3-211ENST00000599808 FGD5Q6ZNL6 1462 aa22.86■■□□□ 1.25
HOMER3-211ENST00000599808 CLASP1Q7Z460 1538 aa22.86■■□□□ 1.25
HOMER3-211ENST00000599808 SYNJ1O43426 1573 aa22.8■■□□□ 1.24
HOMER3-211ENST00000599808 CUX1P39880 1505 aa22.8■■□□□ 1.24
HOMER3-211ENST00000599808 MAGI1Q96QZ7 1491 aaPredicted RBP22.79■■□□□ 1.24
HOMER3-211ENST00000599808 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
HOMER3-211ENST00000599808 GRIN2BQ13224 1484 aa22.76■■□□□ 1.23
HOMER3-211ENST00000599808 SYNJ2O15056 1496 aa22.73■■□□□ 1.23
HOMER3-211ENST00000599808 PBRM1Q86U86 1689 aa22.71■■□□□ 1.23
HOMER3-211ENST00000599808 GAPVD1Q14C86 1478 aa22.64■■□□□ 1.21
HOMER3-211ENST00000599808 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
HOMER3-211ENST00000599808 ABCA10Q8WWZ4 1543 aa22.58■■□□□ 1.21
HOMER3-211ENST00000599808 ERCC6L2Q5T890 1561 aa22.5■■□□□ 1.19
HOMER3-211ENST00000599808 AEBP2Q6ZN18 517 aaPredicted RBP22.5■■□□□ 1.19
HOMER3-211ENST00000599808 GRIN2AQ12879 1464 aa22.48■■□□□ 1.19
HOMER3-211ENST00000599808 ADAMTS12P58397 1594 aa22.44■■□□□ 1.18
HOMER3-211ENST00000599808 CEP170Q5SW79 1584 aa22.44■■□□□ 1.18
HOMER3-211ENST00000599808 NUP160Q12769 1436 aa22.41■■□□□ 1.18
HOMER3-211ENST00000599808 WRNQ14191 1432 aaPredicted RBP eCLIP22.4■■□□□ 1.18
HOMER3-211ENST00000599808 SHROOM2Q13796 1616 aa22.39■■□□□ 1.17
HOMER3-211ENST00000599808 BIVM-ERCC5R4GMW8 1640 aa22.37■■□□□ 1.17
HOMER3-211ENST00000599808 TOP2BQ02880 1626 aa22.35■■□□□ 1.17
HOMER3-211ENST00000599808 FHAD1B1AJZ9 1412 aa22.33■■□□□ 1.17
HOMER3-211ENST00000599808 SUPT5HO00267 1087 aaKnown RBP22.31■■□□□ 1.16
HOMER3-211ENST00000599808 KIF13AQ9H1H9 1805 aa22.3■■□□□ 1.16
HOMER3-211ENST00000599808 ERICH3Q5RHP9 1530 aa22.28■■□□□ 1.16
HOMER3-211ENST00000599808 PRG4Q92954 1404 aaPredicted RBP22.22■■□□□ 1.15
HOMER3-211ENST00000599808 JPH4Q96JJ6 628 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms