RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 NISCHQ9Y2I1 1504 aa46.64■■■■■ 5.06
PNKP-213ENST00000599543 CCDC180Q9P1Z9 1646 aa41.86■■■■■ 4.29
PNKP-213ENST00000599543 ABCC9O60706 1549 aa41.58■■■■■ 4.25
PNKP-213ENST00000599543 RB1CC1Q8TDY2 1594 aa39.72■■■■□ 3.95
PNKP-213ENST00000599543 NACADO15069 1562 aa39.48■■■■□ 3.91
PNKP-213ENST00000599543 DCAF8L2P0C7V8 631 aa39.25■■■■□ 3.87
PNKP-213ENST00000599543 MYO15BQ96JP2 1530 aa38.98■■■■□ 3.83
PNKP-213ENST00000599543 UNC13AQ9UPW8 1703 aa38.87■■■■□ 3.81
PNKP-213ENST00000599543 DNAJC5BQ9UF47 199 aa38.73■■■■□ 3.79
PNKP-213ENST00000599543 ZCCHC6Q5VYS8 1495 aaKnown RBP38.72■■■■□ 3.79
PNKP-213ENST00000599543 PABPN1Q86U42 306 aaKnown RBP eCLIP38.7■■■■□ 3.795e-6■■■■□ 22.2
PNKP-213ENST00000599543 DCAF1Q9Y4B6 1507 aa38.55■■■■□ 3.76
PNKP-213ENST00000599543 BICRAQ9NZM4 1560 aa38.51■■■■□ 3.76
PNKP-213ENST00000599543 SCRIBQ14160 1630 aa38.12■■■■□ 3.69
PNKP-213ENST00000599543 SHROOM4Q9ULL8 1493 aa38.06■■■■□ 3.68
PNKP-213ENST00000599543 CC2D2AQ9P2K1 1620 aa37.61■■■■□ 3.61
PNKP-213ENST00000599543 EIF4G1Q04637 1599 aaKnown RBP37.58■■■■□ 3.61
PNKP-213ENST00000599543 CECR2Q9BXF3 1484 aa37.45■■■■□ 3.59
PNKP-213ENST00000599543 NCAPD3P42695 1498 aa36.39■■■■□ 3.42
PNKP-213ENST00000599543 SMARCA4P51532 1647 aa36.39■■■■□ 3.42
PNKP-213ENST00000599543 ATAD2BQ9ULI0 1458 aa36.31■■■■□ 3.4
PNKP-213ENST00000599543 SMARCA2P51531 1590 aa36.28■■■■□ 3.4
PNKP-213ENST00000599543 BAZ1AQ9NRL2 1556 aaPredicted RBP36.23■■■■□ 3.39
PNKP-213ENST00000599543 HMGXB3Q12766 1538 aa36.2■■■■□ 3.39
PNKP-213ENST00000599543 BAZ1BQ9UIG0 1483 aaKnown RBP36.02■■■■□ 3.36
PNKP-213ENST00000599543 PEG3Q9GZU2 1588 aa36.02■■■■□ 3.36
PNKP-213ENST00000599543 ERCC6Q03468 1493 aa35.94■■■■□ 3.34
PNKP-213ENST00000599543 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
PNKP-213ENST00000599543 CUX2O14529 1486 aa35.79■■■■□ 3.32
PNKP-213ENST00000599543 NESP48681 1621 aa35.77■■■■□ 3.32
PNKP-213ENST00000599543 LAMC3Q9Y6N6 1575 aa35.6■■■■□ 3.29
PNKP-213ENST00000599543 WIZO95785 1651 aa35.56■■■■□ 3.28
PNKP-213ENST00000599543 DNAJC5Q9H3Z4 198 aa35.46■■■■□ 3.27
PNKP-213ENST00000599543 THOC2Q8NI27 1593 aaKnown RBP35.42■■■■□ 3.26
PNKP-213ENST00000599543 KIF21AQ7Z4S6 1674 aa35.4■■■■□ 3.26
PNKP-213ENST00000599543 PDS5BQ9NTI5 1447 aa35.36■■■■□ 3.25
PNKP-213ENST00000599543 CADPSQ9ULU8 1353 aa35.29■■■■□ 3.24
PNKP-213ENST00000599543 RSF1Q96T23 1441 aaPredicted RBP35.23■■■■□ 3.23
PNKP-213ENST00000599543 TOP2AP11388 1531 aaKnown RBP35.12■■■■□ 3.21
PNKP-213ENST00000599543 MRC2Q9UBG0 1479 aa35.05■■■■□ 3.2
PNKP-213ENST00000599543 WDR62O43379 1518 aa34.98■■■■□ 3.19
PNKP-213ENST00000599543 CEP164Q9UPV0 1460 aa34.97■■■■□ 3.19
PNKP-213ENST00000599543 CFTRP13569 1480 aa34.95■■■■□ 3.19
PNKP-213ENST00000599543 FANCD2Q9BXW9 1451 aa34.92■■■■□ 3.18
PNKP-213ENST00000599543 PRDM2Q13029 1718 aa34.76■■■■□ 3.16
PNKP-213ENST00000599543 CCDC88BA6NC98 1476 aa34.67■■■■□ 3.14
PNKP-213ENST00000599543 URB2Q14146 1524 aaKnown RBP34.61■■■■□ 3.13
PNKP-213ENST00000599543 TOPBP1Q92547 1522 aa34.29■■■■□ 3.08
PNKP-213ENST00000599543 IFT140Q96RY7 1462 aa34.25■■■■□ 3.07
PNKP-213ENST00000599543 ABCC8Q09428 1581 aa34.24■■■■□ 3.07
PNKP-213ENST00000599543 DNMBPQ6XZF7 1577 aa34.21■■■■□ 3.07
PNKP-213ENST00000599543 ZNF608Q9ULD9 1512 aaPredicted RBP34.14■■■■□ 3.06
PNKP-213ENST00000599543 OSCARQ8IYS5 282 aa34.13■■■■□ 3.05
PNKP-213ENST00000599543 EIF4G3O43432 1585 aaKnown RBP34.04■■■■□ 3.04
PNKP-213ENST00000599543 TRIM41Q8WV44 630 aa34.03■■■■□ 3.04
PNKP-213ENST00000599543 TARBP1Q13395 1621 aaKnown RBP33.98■■■■□ 3.03
PNKP-213ENST00000599543 POLA1P09884 1462 aaPredicted RBP33.95■■■■□ 3.02
PNKP-213ENST00000599543 AQRO60306 1485 aaKnown RBP eCLIP33.85■■■■□ 3.013e-7■■■■□ 20.5
PNKP-213ENST00000599543 SUPT5HO00267 1087 aaKnown RBP33.82■■■■□ 3
PNKP-213ENST00000599543 RAD54L2Q9Y4B4 1467 aa33.8■■■■□ 3
PNKP-213ENST00000599543 CHD1O14646 1710 aa33.78■■■■□ 3
PNKP-213ENST00000599543 SOGA1O94964 1423 aa33.78■■■■□ 3
PNKP-213ENST00000599543 FGD5Q6ZNL6 1462 aa33.77■■■■□ 3
PNKP-213ENST00000599543 CUX1P39880 1505 aa33.76■■■■□ 3
PNKP-213ENST00000599543 RIMBP3CA6NJZ7 1639 aa33.74■■■□□ 2.99
PNKP-213ENST00000599543 RIMBP3BA6NNM3 1639 aa33.74■■■□□ 2.99
PNKP-213ENST00000599543 RIMBP3Q9UFD9 1639 aa33.74■■■□□ 2.99
PNKP-213ENST00000599543 WDR97A6NE52 1622 aa33.7■■■□□ 2.99
PNKP-213ENST00000599543 TDRD9Q8NDG6 1382 aaKnown RBP33.67■■■□□ 2.98
PNKP-213ENST00000599543 ARHGEF11O15085 1522 aa33.63■■■□□ 2.97
PNKP-213ENST00000599543 FBLN2P98095 1184 aa33.61■■■□□ 2.97
PNKP-213ENST00000599543 SNAPC4Q5SXM2 1469 aa33.56■■■□□ 2.96
PNKP-213ENST00000599543 GRIN2BQ13224 1484 aa33.49■■■□□ 2.95
PNKP-213ENST00000599543 MAGI1Q96QZ7 1491 aaPredicted RBP33.49■■■□□ 2.95
PNKP-213ENST00000599543 PBRM1Q86U86 1689 aa33.45■■■□□ 2.95
PNKP-213ENST00000599543 ABCA10Q8WWZ4 1543 aa33.39■■■□□ 2.94
PNKP-213ENST00000599543 GAPVD1Q14C86 1478 aa33.39■■■□□ 2.94
PNKP-213ENST00000599543 CHMP7Q8WUX9 453 aaPredicted RBP33.39■■■□□ 2.94
PNKP-213ENST00000599543 SYNJ1O43426 1573 aa33.37■■■□□ 2.93
PNKP-213ENST00000599543 SYNJ2O15056 1496 aa33.37■■■□□ 2.93
PNKP-213ENST00000599543 ABCA5Q8WWZ7 1642 aa33.36■■■□□ 2.93
PNKP-213ENST00000599543 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
PNKP-213ENST00000599543 BIVM-ERCC5R4GMW8 1640 aa33.32■■■□□ 2.92
PNKP-213ENST00000599543 CYB5RLQ6IPT4 315 aa33.32■■■□□ 2.92
PNKP-213ENST00000599543 TOP2BQ02880 1626 aa33.31■■■□□ 2.92
PNKP-213ENST00000599543 WRNQ14191 1432 aaPredicted RBP eCLIP33.3■■■□□ 2.92
PNKP-213ENST00000599543 ARAP1Q96P48 1450 aa33.3■■■□□ 2.92
PNKP-213ENST00000599543 ADAMTS12P58397 1594 aa33.1■■■□□ 2.89
PNKP-213ENST00000599543 GRIN2AQ12879 1464 aa33.06■■■□□ 2.88
PNKP-213ENST00000599543 ERICH3Q5RHP9 1530 aa33■■■□□ 2.87
PNKP-213ENST00000599543 FHAD1B1AJZ9 1412 aa32.97■■■□□ 2.87
PNKP-213ENST00000599543 CEP170Q5SW79 1584 aa32.95■■■□□ 2.86
PNKP-213ENST00000599543 NUP160Q12769 1436 aa32.92■■■□□ 2.86
PNKP-213ENST00000599543 TRHP20396 242 aaPredicted RBP32.91■■■□□ 2.86
PNKP-213ENST00000599543 SHROOM2Q13796 1616 aa32.8■■■□□ 2.84
PNKP-213ENST00000599543 ERCC6L2Q5T890 1561 aa32.8■■■□□ 2.84
PNKP-213ENST00000599543 KIF27Q86VH2 1401 aa32.64■■■□□ 2.82
PNKP-213ENST00000599543 RUSC2Q8N2Y8 1516 aa32.64■■■□□ 2.82
PNKP-213ENST00000599543 CUL7Q14999 1698 aa32.61■■■□□ 2.81
PNKP-213ENST00000599543 PRG4Q92954 1404 aaPredicted RBP32.6■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms