RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NISCHQ9Y2I1 1504 aa24.32■■□□□ 1.48
VRK3-216ENST00000599342 CCDC180Q9P1Z9 1646 aa21.8■■□□□ 1.08
VRK3-216ENST00000599342 ABCC9O60706 1549 aa21.69■■□□□ 1.06
VRK3-216ENST00000599342 RB1CC1Q8TDY2 1594 aa20.71■□□□□ 0.91
VRK3-216ENST00000599342 NACADO15069 1562 aa20.59■□□□□ 0.89
VRK3-216ENST00000599342 DCAF8L2P0C7V8 631 aa20.52■□□□□ 0.88
VRK3-216ENST00000599342 MYO15BQ96JP2 1530 aa20.32■□□□□ 0.84
VRK3-216ENST00000599342 ZCCHC6Q5VYS8 1495 aaKnown RBP20.2■□□□□ 0.82
VRK3-216ENST00000599342 PABPN1Q86U42 306 aaKnown RBP eCLIP20.2■□□□□ 0.82
VRK3-216ENST00000599342 DNAJC5BQ9UF47 199 aa20.18■□□□□ 0.82
VRK3-216ENST00000599342 UNC13AQ9UPW8 1703 aa20.18■□□□□ 0.82
VRK3-216ENST00000599342 DCAF1Q9Y4B6 1507 aa20.11■□□□□ 0.81
VRK3-216ENST00000599342 BICRAQ9NZM4 1560 aa20.04■□□□□ 0.8
VRK3-216ENST00000599342 SCRIBQ14160 1630 aa19.87■□□□□ 0.77
VRK3-216ENST00000599342 SHROOM4Q9ULL8 1493 aa19.86■□□□□ 0.77
VRK3-216ENST00000599342 CC2D2AQ9P2K1 1620 aa19.59■□□□□ 0.73
VRK3-216ENST00000599342 EIF4G1Q04637 1599 aaKnown RBP19.58■□□□□ 0.73
VRK3-216ENST00000599342 CECR2Q9BXF3 1484 aa19.54■□□□□ 0.72
VRK3-216ENST00000599342 NCAPD3P42695 1498 aa18.98■□□□□ 0.63
VRK3-216ENST00000599342 SMARCA4P51532 1647 aa18.96■□□□□ 0.63
VRK3-216ENST00000599342 ATAD2BQ9ULI0 1458 aa18.95■□□□□ 0.62
VRK3-216ENST00000599342 SMARCA2P51531 1590 aa18.93■□□□□ 0.62
VRK3-216ENST00000599342 BAZ1AQ9NRL2 1556 aaPredicted RBP18.9■□□□□ 0.62
VRK3-216ENST00000599342 HMGXB3Q12766 1538 aa18.88■□□□□ 0.61
VRK3-216ENST00000599342 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
VRK3-216ENST00000599342 ERCC6Q03468 1493 aa18.77■□□□□ 0.59
VRK3-216ENST00000599342 PEG3Q9GZU2 1588 aa18.76■□□□□ 0.59
VRK3-216ENST00000599342 MROH2BQ7Z745 1585 aa18.73■□□□□ 0.59
VRK3-216ENST00000599342 CUX2O14529 1486 aa18.67■□□□□ 0.58
VRK3-216ENST00000599342 NESP48681 1621 aa18.64■□□□□ 0.57
VRK3-216ENST00000599342 LAMC3Q9Y6N6 1575 aa18.56■□□□□ 0.56
VRK3-216ENST00000599342 WIZO95785 1651 aa18.51■□□□□ 0.55
VRK3-216ENST00000599342 DNAJC5Q9H3Z4 198 aa18.49■□□□□ 0.55
VRK3-216ENST00000599342 PDS5BQ9NTI5 1447 aa18.47■□□□□ 0.55
VRK3-216ENST00000599342 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
VRK3-216ENST00000599342 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
VRK3-216ENST00000599342 KIF21AQ7Z4S6 1674 aa18.41■□□□□ 0.54
VRK3-216ENST00000599342 RSF1Q96T23 1441 aaPredicted RBP18.39■□□□□ 0.53
VRK3-216ENST00000599342 TOP2AP11388 1531 aaKnown RBP18.32■□□□□ 0.52
VRK3-216ENST00000599342 MRC2Q9UBG0 1479 aa18.29■□□□□ 0.52
VRK3-216ENST00000599342 CEP164Q9UPV0 1460 aa18.26■□□□□ 0.51
VRK3-216ENST00000599342 WDR62O43379 1518 aa18.23■□□□□ 0.51
VRK3-216ENST00000599342 CFTRP13569 1480 aa18.23■□□□□ 0.51
VRK3-216ENST00000599342 FANCD2Q9BXW9 1451 aa18.23■□□□□ 0.51
VRK3-216ENST00000599342 CCDC88BA6NC98 1476 aa18.08■□□□□ 0.49
VRK3-216ENST00000599342 PRDM2Q13029 1718 aa18.06■□□□□ 0.48
VRK3-216ENST00000599342 URB2Q14146 1524 aaKnown RBP18.04■□□□□ 0.48
VRK3-216ENST00000599342 TOPBP1Q92547 1522 aa17.88■□□□□ 0.45
VRK3-216ENST00000599342 IFT140Q96RY7 1462 aa17.88■□□□□ 0.45
VRK3-216ENST00000599342 ABCC8Q09428 1581 aa17.87■□□□□ 0.45
VRK3-216ENST00000599342 DNMBPQ6XZF7 1577 aa17.83■□□□□ 0.45
VRK3-216ENST00000599342 OSCARQ8IYS5 282 aa17.82■□□□□ 0.44
VRK3-216ENST00000599342 ZNF608Q9ULD9 1512 aaPredicted RBP17.8■□□□□ 0.44
VRK3-216ENST00000599342 TRIM41Q8WV44 630 aa17.77■□□□□ 0.44
VRK3-216ENST00000599342 EIF4G3O43432 1585 aaKnown RBP17.74■□□□□ 0.43
VRK3-216ENST00000599342 POLA1P09884 1462 aaPredicted RBP17.7■□□□□ 0.42
VRK3-216ENST00000599342 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
VRK3-216ENST00000599342 SUPT5HO00267 1087 aaKnown RBP17.68■□□□□ 0.42
VRK3-216ENST00000599342 AQRO60306 1485 aaKnown RBP eCLIP17.66■□□□□ 0.42
VRK3-216ENST00000599342 SOGA1O94964 1423 aa17.64■□□□□ 0.41
VRK3-216ENST00000599342 RAD54L2Q9Y4B4 1467 aa17.63■□□□□ 0.41
VRK3-216ENST00000599342 FGD5Q6ZNL6 1462 aa17.62■□□□□ 0.41
VRK3-216ENST00000599342 CUX1P39880 1505 aa17.61■□□□□ 0.41
VRK3-216ENST00000599342 TDRD9Q8NDG6 1382 aaKnown RBP17.57■□□□□ 0.4
VRK3-216ENST00000599342 WDR97A6NE52 1622 aa17.57■□□□□ 0.4
VRK3-216ENST00000599342 RIMBP3CA6NJZ7 1639 aa17.57■□□□□ 0.4
VRK3-216ENST00000599342 RIMBP3BA6NNM3 1639 aa17.57■□□□□ 0.4
VRK3-216ENST00000599342 RIMBP3Q9UFD9 1639 aa17.57■□□□□ 0.4
VRK3-216ENST00000599342 CHD1O14646 1710 aa17.56■□□□□ 0.4
VRK3-216ENST00000599342 FBLN2P98095 1184 aa17.56■□□□□ 0.4
VRK3-216ENST00000599342 ARHGEF11O15085 1522 aa17.53■□□□□ 0.4
VRK3-216ENST00000599342 SNAPC4Q5SXM2 1469 aa17.51■□□□□ 0.39
VRK3-216ENST00000599342 GRIN2BQ13224 1484 aa17.48■□□□□ 0.39
VRK3-216ENST00000599342 MAGI1Q96QZ7 1491 aaPredicted RBP17.47■□□□□ 0.39
VRK3-216ENST00000599342 CHMP7Q8WUX9 453 aaPredicted RBP17.45■□□□□ 0.38
VRK3-216ENST00000599342 GAPVD1Q14C86 1478 aa17.43■□□□□ 0.38
VRK3-216ENST00000599342 ABCA10Q8WWZ4 1543 aa17.42■□□□□ 0.38
VRK3-216ENST00000599342 SYNJ2O15056 1496 aa17.41■□□□□ 0.38
VRK3-216ENST00000599342 PBRM1Q86U86 1689 aa17.41■□□□□ 0.38
VRK3-216ENST00000599342 SYNJ1O43426 1573 aa17.4■□□□□ 0.38
VRK3-216ENST00000599342 CYB5RLQ6IPT4 315 aa17.4■□□□□ 0.38
VRK3-216ENST00000599342 WRNQ14191 1432 aaPredicted RBP eCLIP17.39■□□□□ 0.38
VRK3-216ENST00000599342 ABCA5Q8WWZ7 1642 aa17.38■□□□□ 0.37
VRK3-216ENST00000599342 CLASP1Q7Z460 1538 aa17.37■□□□□ 0.37
VRK3-216ENST00000599342 ARAP1Q96P48 1450 aa17.36■□□□□ 0.37
VRK3-216ENST00000599342 TOP2BQ02880 1626 aa17.36■□□□□ 0.37
VRK3-216ENST00000599342 BIVM-ERCC5R4GMW8 1640 aa17.36■□□□□ 0.37
VRK3-216ENST00000599342 GRIN2AQ12879 1464 aa17.25■□□□□ 0.35
VRK3-216ENST00000599342 ADAMTS12P58397 1594 aa17.25■□□□□ 0.35
VRK3-216ENST00000599342 FHAD1B1AJZ9 1412 aa17.21■□□□□ 0.35
VRK3-216ENST00000599342 ERICH3Q5RHP9 1530 aa17.21■□□□□ 0.35
VRK3-216ENST00000599342 TRHP20396 242 aaPredicted RBP17.21■□□□□ 0.35
VRK3-216ENST00000599342 NUP160Q12769 1436 aa17.18■□□□□ 0.34
VRK3-216ENST00000599342 CEP170Q5SW79 1584 aa17.17■□□□□ 0.34
VRK3-216ENST00000599342 ERCC6L2Q5T890 1561 aa17.08■□□□□ 0.32
VRK3-216ENST00000599342 SHROOM2Q13796 1616 aa17.07■□□□□ 0.32
VRK3-216ENST00000599342 KIF27Q86VH2 1401 aa17.05■□□□□ 0.32
VRK3-216ENST00000599342 PRG4Q92954 1404 aaPredicted RBP17.01■□□□□ 0.31
VRK3-216ENST00000599342 RUSC2Q8N2Y8 1516 aa17.01■□□□□ 0.31
VRK3-216ENST00000599342 JPH4Q96JJ6 628 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms