RNA–Protein interactions for RNA: ENST00000599339.1

EBI3-202, Transcript of Epstein-Barr virus induced 3, humanhuman

TSL 2

Gene EBI3, Length 369 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EBI3-202ENST00000599339 NISCHQ9Y2I1 1504 aa36.49■■■■□ 3.43
EBI3-202ENST00000599339 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
EBI3-202ENST00000599339 ABCC9O60706 1549 aa32.69■■■□□ 2.82
EBI3-202ENST00000599339 RB1CC1Q8TDY2 1594 aa31.18■■■□□ 2.58
EBI3-202ENST00000599339 NACADO15069 1562 aa30.97■■■□□ 2.55
EBI3-202ENST00000599339 DCAF8L2P0C7V8 631 aa30.81■■■□□ 2.52
EBI3-202ENST00000599339 MYO15BQ96JP2 1530 aa30.57■■■□□ 2.48
EBI3-202ENST00000599339 DNAJC5BQ9UF47 199 aa30.56■■■□□ 2.48
EBI3-202ENST00000599339 PABPN1Q86U42 306 aaKnown RBP eCLIP30.42■■■□□ 2.46
EBI3-202ENST00000599339 UNC13AQ9UPW8 1703 aa30.39■■■□□ 2.46
EBI3-202ENST00000599339 ZCCHC6Q5VYS8 1495 aaKnown RBP30.25■■■□□ 2.43
EBI3-202ENST00000599339 BICRAQ9NZM4 1560 aa30.19■■■□□ 2.42
EBI3-202ENST00000599339 DCAF1Q9Y4B6 1507 aa30.17■■■□□ 2.42
EBI3-202ENST00000599339 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
EBI3-202ENST00000599339 SCRIBQ14160 1630 aa29.82■■■□□ 2.36
EBI3-202ENST00000599339 CC2D2AQ9P2K1 1620 aa29.53■■■□□ 2.32
EBI3-202ENST00000599339 EIF4G1Q04637 1599 aaKnown RBP29.49■■■□□ 2.31
EBI3-202ENST00000599339 CECR2Q9BXF3 1484 aa29.47■■■□□ 2.31
EBI3-202ENST00000599339 NCAPD3P42695 1498 aa28.57■■■□□ 2.16
EBI3-202ENST00000599339 ATAD2BQ9ULI0 1458 aa28.47■■■□□ 2.15
EBI3-202ENST00000599339 SMARCA4P51532 1647 aa28.46■■■□□ 2.15
EBI3-202ENST00000599339 SMARCA2P51531 1590 aa28.45■■■□□ 2.14
EBI3-202ENST00000599339 HMGXB3Q12766 1538 aa28.38■■■□□ 2.13
EBI3-202ENST00000599339 BAZ1AQ9NRL2 1556 aaPredicted RBP28.36■■■□□ 2.13
EBI3-202ENST00000599339 ERCC6Q03468 1493 aa28.28■■■□□ 2.12
EBI3-202ENST00000599339 BAZ1BQ9UIG0 1483 aaKnown RBP28.24■■■□□ 2.11
EBI3-202ENST00000599339 CUX2O14529 1486 aa28.21■■■□□ 2.11
EBI3-202ENST00000599339 PEG3Q9GZU2 1588 aa28.19■■■□□ 2.1
EBI3-202ENST00000599339 DNAJC5Q9H3Z4 198 aa28.13■■■□□ 2.09
EBI3-202ENST00000599339 MROH2BQ7Z745 1585 aa28.08■■■□□ 2.09
EBI3-202ENST00000599339 NESP48681 1621 aa28.06■■■□□ 2.08
EBI3-202ENST00000599339 LAMC3Q9Y6N6 1575 aa27.94■■■□□ 2.06
EBI3-202ENST00000599339 PDS5BQ9NTI5 1447 aa27.8■■■□□ 2.04
EBI3-202ENST00000599339 THOC2Q8NI27 1593 aaKnown RBP27.8■■■□□ 2.04
EBI3-202ENST00000599339 WIZO95785 1651 aa27.75■■■□□ 2.03
EBI3-202ENST00000599339 KIF21AQ7Z4S6 1674 aa27.72■■■□□ 2.03
EBI3-202ENST00000599339 CADPSQ9ULU8 1353 aa27.71■■■□□ 2.03
EBI3-202ENST00000599339 MRC2Q9UBG0 1479 aa27.53■■■□□ 2
EBI3-202ENST00000599339 RSF1Q96T23 1441 aaPredicted RBP27.52■■■□□ 2
EBI3-202ENST00000599339 WDR62O43379 1518 aa27.45■■□□□ 1.98
EBI3-202ENST00000599339 TOP2AP11388 1531 aaKnown RBP27.45■■□□□ 1.98
EBI3-202ENST00000599339 CEP164Q9UPV0 1460 aa27.44■■□□□ 1.98
EBI3-202ENST00000599339 CFTRP13569 1480 aa27.39■■□□□ 1.98
EBI3-202ENST00000599339 FANCD2Q9BXW9 1451 aa27.39■■□□□ 1.98
EBI3-202ENST00000599339 PRDM2Q13029 1718 aa27.13■■□□□ 1.93
EBI3-202ENST00000599339 URB2Q14146 1524 aaKnown RBP27.13■■□□□ 1.93
EBI3-202ENST00000599339 CCDC88BA6NC98 1476 aa27.11■■□□□ 1.93
EBI3-202ENST00000599339 OSCARQ8IYS5 282 aa26.93■■□□□ 1.9
EBI3-202ENST00000599339 TRIM41Q8WV44 630 aa26.91■■□□□ 1.9
EBI3-202ENST00000599339 IFT140Q96RY7 1462 aa26.9■■□□□ 1.9
EBI3-202ENST00000599339 ABCC8Q09428 1581 aa26.88■■□□□ 1.89
EBI3-202ENST00000599339 TOPBP1Q92547 1522 aa26.87■■□□□ 1.89
EBI3-202ENST00000599339 DNMBPQ6XZF7 1577 aa26.8■■□□□ 1.88
EBI3-202ENST00000599339 ZNF608Q9ULD9 1512 aaPredicted RBP26.79■■□□□ 1.88
EBI3-202ENST00000599339 EIF4G3O43432 1585 aaKnown RBP26.67■■□□□ 1.86
EBI3-202ENST00000599339 TARBP1Q13395 1621 aaKnown RBP26.61■■□□□ 1.85
EBI3-202ENST00000599339 POLA1P09884 1462 aaPredicted RBP26.59■■□□□ 1.85
EBI3-202ENST00000599339 AQRO60306 1485 aaKnown RBP eCLIP26.55■■□□□ 1.84
EBI3-202ENST00000599339 RIMBP3CA6NJZ7 1639 aa26.54■■□□□ 1.84
EBI3-202ENST00000599339 RIMBP3BA6NNM3 1639 aa26.54■■□□□ 1.84
EBI3-202ENST00000599339 RIMBP3Q9UFD9 1639 aa26.54■■□□□ 1.84
EBI3-202ENST00000599339 SOGA1O94964 1423 aa26.49■■□□□ 1.83
EBI3-202ENST00000599339 RAD54L2Q9Y4B4 1467 aa26.47■■□□□ 1.83
EBI3-202ENST00000599339 ARHGEF11O15085 1522 aa26.46■■□□□ 1.83
EBI3-202ENST00000599339 CHD1O14646 1710 aa26.45■■□□□ 1.83
EBI3-202ENST00000599339 FGD5Q6ZNL6 1462 aa26.43■■□□□ 1.82
EBI3-202ENST00000599339 FBLN2P98095 1184 aa26.43■■□□□ 1.82
EBI3-202ENST00000599339 WDR97A6NE52 1622 aa26.42■■□□□ 1.82
EBI3-202ENST00000599339 TDRD9Q8NDG6 1382 aaKnown RBP26.41■■□□□ 1.82
EBI3-202ENST00000599339 CUX1P39880 1505 aa26.39■■□□□ 1.82
EBI3-202ENST00000599339 SUPT5HO00267 1087 aaKnown RBP26.35■■□□□ 1.81
EBI3-202ENST00000599339 SNAPC4Q5SXM2 1469 aa26.31■■□□□ 1.8
EBI3-202ENST00000599339 MAGI1Q96QZ7 1491 aaPredicted RBP26.28■■□□□ 1.8
EBI3-202ENST00000599339 CYB5RLQ6IPT4 315 aa26.27■■□□□ 1.8
EBI3-202ENST00000599339 GRIN2BQ13224 1484 aa26.27■■□□□ 1.8
EBI3-202ENST00000599339 CHMP7Q8WUX9 453 aaPredicted RBP26.25■■□□□ 1.79
EBI3-202ENST00000599339 SYNJ1O43426 1573 aa26.2■■□□□ 1.78
EBI3-202ENST00000599339 ARAP1Q96P48 1450 aa26.19■■□□□ 1.78
EBI3-202ENST00000599339 SYNJ2O15056 1496 aa26.18■■□□□ 1.78
EBI3-202ENST00000599339 GAPVD1Q14C86 1478 aa26.17■■□□□ 1.78
EBI3-202ENST00000599339 CLASP1Q7Z460 1538 aa26.15■■□□□ 1.78
EBI3-202ENST00000599339 ABCA10Q8WWZ4 1543 aa26.15■■□□□ 1.78
EBI3-202ENST00000599339 PBRM1Q86U86 1689 aa26.14■■□□□ 1.78
EBI3-202ENST00000599339 ABCA5Q8WWZ7 1642 aa26.09■■□□□ 1.77
EBI3-202ENST00000599339 WRNQ14191 1432 aaPredicted RBP eCLIP26.07■■□□□ 1.76
EBI3-202ENST00000599339 BIVM-ERCC5R4GMW8 1640 aa26.01■■□□□ 1.75
EBI3-202ENST00000599339 TOP2BQ02880 1626 aa26■■□□□ 1.75
EBI3-202ENST00000599339 TRHP20396 242 aaPredicted RBP26■■□□□ 1.75
EBI3-202ENST00000599339 GRIN2AQ12879 1464 aa25.91■■□□□ 1.74
EBI3-202ENST00000599339 ADAMTS12P58397 1594 aa25.9■■□□□ 1.74
EBI3-202ENST00000599339 FHAD1B1AJZ9 1412 aa25.86■■□□□ 1.73
EBI3-202ENST00000599339 ERICH3Q5RHP9 1530 aa25.84■■□□□ 1.73
EBI3-202ENST00000599339 NUP160Q12769 1436 aa25.82■■□□□ 1.72
EBI3-202ENST00000599339 CEP170Q5SW79 1584 aa25.79■■□□□ 1.72
EBI3-202ENST00000599339 ERCC6L2Q5T890 1561 aa25.7■■□□□ 1.71
EBI3-202ENST00000599339 SHROOM2Q13796 1616 aa25.7■■□□□ 1.7
EBI3-202ENST00000599339 PRG4Q92954 1404 aaPredicted RBP25.58■■□□□ 1.69
EBI3-202ENST00000599339 JPH4Q96JJ6 628 aa25.57■■□□□ 1.68
EBI3-202ENST00000599339 KIF27Q86VH2 1401 aa25.54■■□□□ 1.68
EBI3-202ENST00000599339 RUSC2Q8N2Y8 1516 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms