RNA–Protein interactions for RNA: ENST00000599255.5

EMP3-208, Transcript of epithelial membrane protein 3, humanhuman

TSL 3

Gene EMP3, Length 667 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EMP3-208ENST00000599255 NISCHQ9Y2I1 1504 aa32.35■■■□□ 2.77
EMP3-208ENST00000599255 CCDC180Q9P1Z9 1646 aa28.3■■■□□ 2.12
EMP3-208ENST00000599255 ZCCHC6Q5VYS8 1495 aaKnown RBP27.19■■□□□ 1.94
EMP3-208ENST00000599255 DCAF1Q9Y4B6 1507 aa26.84■■□□□ 1.89
EMP3-208ENST00000599255 ABCC9O60706 1549 aa26.55■■□□□ 1.84
EMP3-208ENST00000599255 DCAF8L2P0C7V8 631 aa26.53■■□□□ 1.84
EMP3-208ENST00000599255 MYO15BQ96JP2 1530 aa26.53■■□□□ 1.84
EMP3-208ENST00000599255 NACADO15069 1562 aa26.31■■□□□ 1.8
EMP3-208ENST00000599255 SHROOM4Q9ULL8 1493 aa26.23■■□□□ 1.79
EMP3-208ENST00000599255 RB1CC1Q8TDY2 1594 aa26.07■■□□□ 1.76
EMP3-208ENST00000599255 SCRIBQ14160 1630 aa25.89■■□□□ 1.74
EMP3-208ENST00000599255 UNC13AQ9UPW8 1703 aa25.53■■□□□ 1.68
EMP3-208ENST00000599255 SUPT5HO00267 1087 aaKnown RBP25.26■■□□□ 1.63
EMP3-208ENST00000599255 BICRAQ9NZM4 1560 aa25.24■■□□□ 1.63
EMP3-208ENST00000599255 RSF1Q96T23 1441 aaPredicted RBP25.06■■□□□ 1.6
EMP3-208ENST00000599255 CECR2Q9BXF3 1484 aa25.06■■□□□ 1.6
EMP3-208ENST00000599255 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
EMP3-208ENST00000599255 PABPN1Q86U42 306 aaKnown RBP eCLIP24.99■■□□□ 1.59
EMP3-208ENST00000599255 MROH2BQ7Z745 1585 aa24.95■■□□□ 1.58
EMP3-208ENST00000599255 SMARCA4P51532 1647 aa24.88■■□□□ 1.57
EMP3-208ENST00000599255 WIZO95785 1651 aa24.77■■□□□ 1.56
EMP3-208ENST00000599255 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
EMP3-208ENST00000599255 TOP2AP11388 1531 aaKnown RBP24.56■■□□□ 1.52
EMP3-208ENST00000599255 SMARCA2P51531 1590 aa24.47■■□□□ 1.51
EMP3-208ENST00000599255 EIF4G1Q04637 1599 aaKnown RBP24.47■■□□□ 1.51
EMP3-208ENST00000599255 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
EMP3-208ENST00000599255 BAZ1BQ9UIG0 1483 aaKnown RBP24.3■■□□□ 1.48
EMP3-208ENST00000599255 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
EMP3-208ENST00000599255 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
EMP3-208ENST00000599255 NCAPD3P42695 1498 aa24.25■■□□□ 1.47
EMP3-208ENST00000599255 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
EMP3-208ENST00000599255 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
EMP3-208ENST00000599255 TRIM41Q8WV44 630 aa23.82■■□□□ 1.4
EMP3-208ENST00000599255 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
EMP3-208ENST00000599255 CFTRP13569 1480 aa23.7■■□□□ 1.38
EMP3-208ENST00000599255 PRDM2Q13029 1718 aa23.68■■□□□ 1.38
EMP3-208ENST00000599255 WRNQ14191 1432 aaPredicted RBP eCLIP23.6■■□□□ 1.37
EMP3-208ENST00000599255 CADPSQ9ULU8 1353 aa23.6■■□□□ 1.37
EMP3-208ENST00000599255 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
EMP3-208ENST00000599255 BIVM-ERCC5R4GMW8 1640 aa23.47■■□□□ 1.35
EMP3-208ENST00000599255 TOP2BQ02880 1626 aa23.46■■□□□ 1.35
EMP3-208ENST00000599255 LAMC3Q9Y6N6 1575 aa23.45■■□□□ 1.34
EMP3-208ENST00000599255 EEA1Q15075 1411 aa23.35■■□□□ 1.33
EMP3-208ENST00000599255 CUX1P39880 1505 aa23.34■■□□□ 1.33
EMP3-208ENST00000599255 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
EMP3-208ENST00000599255 DNAJC5BQ9UF47 199 aa23.32■■□□□ 1.32
EMP3-208ENST00000599255 NESP48681 1621 aa23.31■■□□□ 1.32
EMP3-208ENST00000599255 FAM9AQ8IZU1 332 aaPredicted RBP23.29■■□□□ 1.32
EMP3-208ENST00000599255 SOGA1O94964 1423 aa23.26■■□□□ 1.31
EMP3-208ENST00000599255 LOC105371045A0A1W2PR82 267 aa23.26■■□□□ 1.31
EMP3-208ENST00000599255 PDS5BQ9NTI5 1447 aa23.23■■□□□ 1.31
EMP3-208ENST00000599255 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
EMP3-208ENST00000599255 DNMBPQ6XZF7 1577 aa23.18■■□□□ 1.3
EMP3-208ENST00000599255 RUSC2Q8N2Y8 1516 aa23.16■■□□□ 1.3
EMP3-208ENST00000599255 CSRNP3Q8WYN3 585 aa23.13■■□□□ 1.29
EMP3-208ENST00000599255 KIF21AQ7Z4S6 1674 aa23.12■■□□□ 1.29
EMP3-208ENST00000599255 TOPBP1Q92547 1522 aa23.09■■□□□ 1.29
EMP3-208ENST00000599255 FGD5Q6ZNL6 1462 aa23.08■■□□□ 1.29
EMP3-208ENST00000599255 KIF21BO75037 1637 aa23.04■■□□□ 1.28
EMP3-208ENST00000599255 URB2Q14146 1524 aaKnown RBP23.03■■□□□ 1.28
EMP3-208ENST00000599255 KIF27Q86VH2 1401 aa23.02■■□□□ 1.28
EMP3-208ENST00000599255 GOLGA3Q08378 1498 aa22.98■■□□□ 1.27
EMP3-208ENST00000599255 POLA1P09884 1462 aaPredicted RBP22.96■■□□□ 1.27
EMP3-208ENST00000599255 MRC2Q9UBG0 1479 aa22.93■■□□□ 1.26
EMP3-208ENST00000599255 ABCA10Q8WWZ4 1543 aa22.92■■□□□ 1.26
EMP3-208ENST00000599255 CUX2O14529 1486 aa22.92■■□□□ 1.26
EMP3-208ENST00000599255 TNIKQ9UKE5 1360 aa22.91■■□□□ 1.26
EMP3-208ENST00000599255 EHMT2Q96KQ7 1210 aa22.89■■□□□ 1.25
EMP3-208ENST00000599255 WDR97A6NE52 1622 aa22.89■■□□□ 1.25
EMP3-208ENST00000599255 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
EMP3-208ENST00000599255 PRXQ9BXM0 1461 aa22.87■■□□□ 1.25
EMP3-208ENST00000599255 RAD54L2Q9Y4B4 1467 aa22.85■■□□□ 1.25
EMP3-208ENST00000599255 WDR62O43379 1518 aa22.83■■□□□ 1.25
EMP3-208ENST00000599255 RAPGEF2Q9Y4G8 1499 aa22.81■■□□□ 1.24
EMP3-208ENST00000599255 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
EMP3-208ENST00000599255 UBTFP17480 764 aaKnown RBP22.79■■□□□ 1.24
EMP3-208ENST00000599255 IGF1RP08069 1367 aa22.77■■□□□ 1.24
EMP3-208ENST00000599255 TARBP1Q13395 1621 aaKnown RBP22.77■■□□□ 1.24
EMP3-208ENST00000599255 THOC2Q8NI27 1593 aaKnown RBP22.75■■□□□ 1.23
EMP3-208ENST00000599255 ABCA5Q8WWZ7 1642 aa22.75■■□□□ 1.23
EMP3-208ENST00000599255 CEP162Q5TB80 1403 aa22.74■■□□□ 1.23
EMP3-208ENST00000599255 CUL7Q14999 1698 aa22.71■■□□□ 1.23
EMP3-208ENST00000599255 CARMIL1Q5VZK9 1371 aa22.67■■□□□ 1.22
EMP3-208ENST00000599255 IFT140Q96RY7 1462 aa22.66■■□□□ 1.22
EMP3-208ENST00000599255 GAPVD1Q14C86 1478 aa22.66■■□□□ 1.22
EMP3-208ENST00000599255 TDRD9Q8NDG6 1382 aaKnown RBP22.6■■□□□ 1.21
EMP3-208ENST00000599255 PBRM1Q86U86 1689 aa22.58■■□□□ 1.21
EMP3-208ENST00000599255 CLIP1P30622 1438 aa22.58■■□□□ 1.21
EMP3-208ENST00000599255 GRIN2BQ13224 1484 aa22.49■■□□□ 1.19
EMP3-208ENST00000599255 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.192e-7■■■■□ 23.4
EMP3-208ENST00000599255 ZNF608Q9ULD9 1512 aaPredicted RBP22.46■■□□□ 1.19
EMP3-208ENST00000599255 CTTNBP2Q8WZ74 1663 aa22.46■■□□□ 1.19
EMP3-208ENST00000599255 EIF4G3O43432 1585 aaKnown RBP22.45■■□□□ 1.18
EMP3-208ENST00000599255 ADAMTS12P58397 1594 aa22.44■■□□□ 1.18
EMP3-208ENST00000599255 FHAD1B1AJZ9 1412 aa22.43■■□□□ 1.18
EMP3-208ENST00000599255 VPS8Q8N3P4 1428 aa22.4■■□□□ 1.18
EMP3-208ENST00000599255 ARAP1Q96P48 1450 aa22.37■■□□□ 1.17
EMP3-208ENST00000599255 ARHGAP35Q9NRY4 1499 aa22.35■■□□□ 1.17
EMP3-208ENST00000599255 TRIM26Q12899 539 aaPredicted RBP22.33■■□□□ 1.17
EMP3-208ENST00000599255 MAGI1Q96QZ7 1491 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms