RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 NISCHQ9Y2I1 1504 aa30.24■■■□□ 2.43
LIG1-217ENST00000599165 CCDC180Q9P1Z9 1646 aa26.99■■□□□ 1.91
LIG1-217ENST00000599165 ABCC9O60706 1549 aa26.6■■□□□ 1.85
LIG1-217ENST00000599165 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
LIG1-217ENST00000599165 NACADO15069 1562 aa25.39■■□□□ 1.66
LIG1-217ENST00000599165 MYO15BQ96JP2 1530 aa25.18■■□□□ 1.62
LIG1-217ENST00000599165 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
LIG1-217ENST00000599165 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
LIG1-217ENST00000599165 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
LIG1-217ENST00000599165 DCAF1Q9Y4B6 1507 aa25.01■■□□□ 1.59
LIG1-217ENST00000599165 BICRAQ9NZM4 1560 aa24.83■■□□□ 1.57
LIG1-217ENST00000599165 PABPN1Q86U42 306 aaKnown RBP eCLIP24.79■■□□□ 1.56
LIG1-217ENST00000599165 DNAJC5BQ9UF47 199 aa24.7■■□□□ 1.54
LIG1-217ENST00000599165 SCRIBQ14160 1630 aa24.6■■□□□ 1.53
LIG1-217ENST00000599165 SHROOM4Q9ULL8 1493 aa24.42■■□□□ 1.5
LIG1-217ENST00000599165 EIF4G1Q04637 1599 aaKnown RBP24.12■■□□□ 1.45
LIG1-217ENST00000599165 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
LIG1-217ENST00000599165 CECR2Q9BXF3 1484 aa23.91■■□□□ 1.42
LIG1-217ENST00000599165 SMARCA4P51532 1647 aa23.53■■□□□ 1.36
LIG1-217ENST00000599165 NCAPD3P42695 1498 aa23.45■■□□□ 1.34
LIG1-217ENST00000599165 ATAD2BQ9ULI0 1458 aa23.44■■□□□ 1.34
LIG1-217ENST00000599165 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
LIG1-217ENST00000599165 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
LIG1-217ENST00000599165 MROH2BQ7Z745 1585 aa23.34■■□□□ 1.33
LIG1-217ENST00000599165 HMGXB3Q12766 1538 aa23.32■■□□□ 1.32
LIG1-217ENST00000599165 PEG3Q9GZU2 1588 aa23.31■■□□□ 1.32
LIG1-217ENST00000599165 BAZ1BQ9UIG0 1483 aaKnown RBP23.18■■□□□ 1.3
LIG1-217ENST00000599165 WIZO95785 1651 aa23.07■■□□□ 1.28
LIG1-217ENST00000599165 NESP48681 1621 aa23■■□□□ 1.27
LIG1-217ENST00000599165 RSF1Q96T23 1441 aaPredicted RBP22.95■■□□□ 1.26
LIG1-217ENST00000599165 ERCC6Q03468 1493 aa22.86■■□□□ 1.25
LIG1-217ENST00000599165 LAMC3Q9Y6N6 1575 aa22.85■■□□□ 1.25
LIG1-217ENST00000599165 TOP2AP11388 1531 aaKnown RBP22.77■■□□□ 1.24
LIG1-217ENST00000599165 CUX2O14529 1486 aa22.75■■□□□ 1.23
LIG1-217ENST00000599165 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
LIG1-217ENST00000599165 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
LIG1-217ENST00000599165 CADPSQ9ULU8 1353 aa22.72■■□□□ 1.23
LIG1-217ENST00000599165 PDS5BQ9NTI5 1447 aa22.64■■□□□ 1.21
LIG1-217ENST00000599165 CFTRP13569 1480 aa22.58■■□□□ 1.2
LIG1-217ENST00000599165 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
LIG1-217ENST00000599165 MRC2Q9UBG0 1479 aa22.48■■□□□ 1.19
LIG1-217ENST00000599165 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
LIG1-217ENST00000599165 WDR62O43379 1518 aa22.47■■□□□ 1.19
LIG1-217ENST00000599165 CEP164Q9UPV0 1460 aa22.45■■□□□ 1.18
LIG1-217ENST00000599165 PRDM2Q13029 1718 aa22.43■■□□□ 1.18
LIG1-217ENST00000599165 DNAJC5Q9H3Z4 198 aa22.33■■□□□ 1.17
LIG1-217ENST00000599165 URB2Q14146 1524 aaKnown RBP22.32■■□□□ 1.16
LIG1-217ENST00000599165 TOPBP1Q92547 1522 aa22.11■■□□□ 1.13
LIG1-217ENST00000599165 SUPT5HO00267 1087 aaKnown RBP22.08■■□□□ 1.13
LIG1-217ENST00000599165 DNMBPQ6XZF7 1577 aa22.06■■□□□ 1.12
LIG1-217ENST00000599165 ABCC8Q09428 1581 aa22.01■■□□□ 1.11
LIG1-217ENST00000599165 IFT140Q96RY7 1462 aa21.99■■□□□ 1.11
LIG1-217ENST00000599165 ZNF608Q9ULD9 1512 aaPredicted RBP21.99■■□□□ 1.11
LIG1-217ENST00000599165 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
LIG1-217ENST00000599165 POLA1P09884 1462 aaPredicted RBP21.92■■□□□ 1.1
LIG1-217ENST00000599165 CUX1P39880 1505 aa21.9■■□□□ 1.1
LIG1-217ENST00000599165 EIF4G3O43432 1585 aaKnown RBP21.88■■□□□ 1.09
LIG1-217ENST00000599165 RAD54L2Q9Y4B4 1467 aa21.83■■□□□ 1.08
LIG1-217ENST00000599165 FGD5Q6ZNL6 1462 aa21.82■■□□□ 1.08
LIG1-217ENST00000599165 AQRO60306 1485 aaKnown RBP eCLIP21.79■■□□□ 1.089e-7■■■■■ 31.6
LIG1-217ENST00000599165 SOGA1O94964 1423 aa21.76■■□□□ 1.07
LIG1-217ENST00000599165 WDR97A6NE52 1622 aa21.73■■□□□ 1.07
LIG1-217ENST00000599165 OSCARQ8IYS5 282 aa21.7■■□□□ 1.06
LIG1-217ENST00000599165 TDRD9Q8NDG6 1382 aaKnown RBP21.69■■□□□ 1.06
LIG1-217ENST00000599165 CHD1O14646 1710 aa21.66■■□□□ 1.06
LIG1-217ENST00000599165 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
LIG1-217ENST00000599165 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
LIG1-217ENST00000599165 TOP2BQ02880 1626 aa21.62■■□□□ 1.05
LIG1-217ENST00000599165 WRNQ14191 1432 aaPredicted RBP eCLIP21.6■■□□□ 1.05
LIG1-217ENST00000599165 ABCA10Q8WWZ4 1543 aa21.6■■□□□ 1.05
LIG1-217ENST00000599165 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.05
LIG1-217ENST00000599165 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.04
LIG1-217ENST00000599165 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
LIG1-217ENST00000599165 GRIN2BQ13224 1484 aa21.54■■□□□ 1.04
LIG1-217ENST00000599165 GAPVD1Q14C86 1478 aa21.52■■□□□ 1.03
LIG1-217ENST00000599165 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.03
LIG1-217ENST00000599165 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
LIG1-217ENST00000599165 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
LIG1-217ENST00000599165 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
LIG1-217ENST00000599165 ARHGEF11O15085 1522 aa21.46■■□□□ 1.03
LIG1-217ENST00000599165 SYNJ2O15056 1496 aa21.45■■□□□ 1.02
LIG1-217ENST00000599165 FBLN2P98095 1184 aa21.44■■□□□ 1.02
LIG1-217ENST00000599165 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
LIG1-217ENST00000599165 CLASP1Q7Z460 1538 aa21.43■■□□□ 1.02
LIG1-217ENST00000599165 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
LIG1-217ENST00000599165 CHMP7Q8WUX9 453 aaPredicted RBP21.36■■□□□ 1.01
LIG1-217ENST00000599165 ERICH3Q5RHP9 1530 aa21.31■■□□□ 1
LIG1-217ENST00000599165 GRIN2AQ12879 1464 aa21.3■■□□□ 1
LIG1-217ENST00000599165 ARAP1Q96P48 1450 aa21.3■■□□□ 1
LIG1-217ENST00000599165 CEP170Q5SW79 1584 aa21.26■□□□□ 0.99
LIG1-217ENST00000599165 FHAD1B1AJZ9 1412 aa21.25■□□□□ 0.99
LIG1-217ENST00000599165 NUP160Q12769 1436 aa21.24■□□□□ 0.99
LIG1-217ENST00000599165 CYB5RLQ6IPT4 315 aa21.19■□□□□ 0.98
LIG1-217ENST00000599165 ERCC6L2Q5T890 1561 aa21.15■□□□□ 0.98
LIG1-217ENST00000599165 SHROOM2Q13796 1616 aa21.14■□□□□ 0.97
LIG1-217ENST00000599165 IGF1RP08069 1367 aa21.13■□□□□ 0.97
LIG1-217ENST00000599165 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
LIG1-217ENST00000599165 CUL7Q14999 1698 aa21.08■□□□□ 0.96
LIG1-217ENST00000599165 RUSC2Q8N2Y8 1516 aa21.07■□□□□ 0.96
LIG1-217ENST00000599165 CARMIL1Q5VZK9 1371 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms