RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 NISCHQ9Y2I1 1504 aa23.85■■□□□ 1.41
VRK3-215ENST00000599138 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
VRK3-215ENST00000599138 ABCC9O60706 1549 aa20.85■□□□□ 0.93
VRK3-215ENST00000599138 RB1CC1Q8TDY2 1594 aa20.03■□□□□ 0.8
VRK3-215ENST00000599138 NACADO15069 1562 aa20■□□□□ 0.79
VRK3-215ENST00000599138 MYO15BQ96JP2 1530 aa19.89■□□□□ 0.77
VRK3-215ENST00000599138 DCAF8L2P0C7V8 631 aa19.88■□□□□ 0.77
VRK3-215ENST00000599138 ZCCHC6Q5VYS8 1495 aaKnown RBP19.86■□□□□ 0.77
VRK3-215ENST00000599138 DCAF1Q9Y4B6 1507 aa19.76■□□□□ 0.75
VRK3-215ENST00000599138 UNC13AQ9UPW8 1703 aa19.59■□□□□ 0.73
VRK3-215ENST00000599138 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
VRK3-215ENST00000599138 BICRAQ9NZM4 1560 aa19.46■□□□□ 0.71
VRK3-215ENST00000599138 SCRIBQ14160 1630 aa19.33■□□□□ 0.69
VRK3-215ENST00000599138 DNAJC5BQ9UF47 199 aa19.28■□□□□ 0.68
VRK3-215ENST00000599138 SHROOM4Q9ULL8 1493 aa19.26■□□□□ 0.67
VRK3-215ENST00000599138 EIF4G1Q04637 1599 aaKnown RBP18.93■□□□□ 0.62
VRK3-215ENST00000599138 CC2D2AQ9P2K1 1620 aa18.88■□□□□ 0.61
VRK3-215ENST00000599138 CECR2Q9BXF3 1484 aa18.77■□□□□ 0.59
VRK3-215ENST00000599138 SMARCA4P51532 1647 aa18.52■□□□□ 0.55
VRK3-215ENST00000599138 BAZ1AQ9NRL2 1556 aaPredicted RBP18.48■□□□□ 0.55
VRK3-215ENST00000599138 NCAPD3P42695 1498 aa18.48■□□□□ 0.55
VRK3-215ENST00000599138 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
VRK3-215ENST00000599138 SMARCA2P51531 1590 aa18.42■□□□□ 0.54
VRK3-215ENST00000599138 MROH2BQ7Z745 1585 aa18.38■□□□□ 0.53
VRK3-215ENST00000599138 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
VRK3-215ENST00000599138 HMGXB3Q12766 1538 aa18.36■□□□□ 0.53
VRK3-215ENST00000599138 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
VRK3-215ENST00000599138 WIZO95785 1651 aa18.15■□□□□ 0.5
VRK3-215ENST00000599138 RSF1Q96T23 1441 aaPredicted RBP18.14■□□□□ 0.49
VRK3-215ENST00000599138 NESP48681 1621 aa18.03■□□□□ 0.48
VRK3-215ENST00000599138 LAMC3Q9Y6N6 1575 aa17.97■□□□□ 0.47
VRK3-215ENST00000599138 TOP2AP11388 1531 aaKnown RBP17.97■□□□□ 0.47
VRK3-215ENST00000599138 ERCC6Q03468 1493 aa17.96■□□□□ 0.47
VRK3-215ENST00000599138 CADPSQ9ULU8 1353 aa17.91■□□□□ 0.46
VRK3-215ENST00000599138 CUX2O14529 1486 aa17.86■□□□□ 0.45
VRK3-215ENST00000599138 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
VRK3-215ENST00000599138 KIF21AQ7Z4S6 1674 aa17.8■□□□□ 0.44
VRK3-215ENST00000599138 CFTRP13569 1480 aa17.8■□□□□ 0.44
VRK3-215ENST00000599138 THOC2Q8NI27 1593 aaKnown RBP17.79■□□□□ 0.44
VRK3-215ENST00000599138 CCDC88BA6NC98 1476 aa17.76■□□□□ 0.43
VRK3-215ENST00000599138 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
VRK3-215ENST00000599138 MRC2Q9UBG0 1479 aa17.68■□□□□ 0.42
VRK3-215ENST00000599138 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
VRK3-215ENST00000599138 WDR62O43379 1518 aa17.64■□□□□ 0.41
VRK3-215ENST00000599138 PRDM2Q13029 1718 aa17.63■□□□□ 0.41
VRK3-215ENST00000599138 URB2Q14146 1524 aaKnown RBP17.53■□□□□ 0.4
VRK3-215ENST00000599138 SUPT5HO00267 1087 aaKnown RBP17.53■□□□□ 0.4
VRK3-215ENST00000599138 DNAJC5Q9H3Z4 198 aa17.44■□□□□ 0.38
VRK3-215ENST00000599138 TOPBP1Q92547 1522 aa17.41■□□□□ 0.38
VRK3-215ENST00000599138 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
VRK3-215ENST00000599138 DNMBPQ6XZF7 1577 aa17.37■□□□□ 0.37
VRK3-215ENST00000599138 IFT140Q96RY7 1462 aa17.32■□□□□ 0.36
VRK3-215ENST00000599138 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
VRK3-215ENST00000599138 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
VRK3-215ENST00000599138 CUX1P39880 1505 aa17.24■□□□□ 0.35
VRK3-215ENST00000599138 TARBP1Q13395 1621 aaKnown RBP17.24■□□□□ 0.35
VRK3-215ENST00000599138 FGD5Q6ZNL6 1462 aa17.18■□□□□ 0.34
VRK3-215ENST00000599138 SOGA1O94964 1423 aa17.17■□□□□ 0.34
VRK3-215ENST00000599138 RAD54L2Q9Y4B4 1467 aa17.17■□□□□ 0.34
VRK3-215ENST00000599138 EIF4G3O43432 1585 aaKnown RBP17.16■□□□□ 0.34
VRK3-215ENST00000599138 AQRO60306 1485 aaKnown RBP eCLIP17.13■□□□□ 0.33
VRK3-215ENST00000599138 WDR97A6NE52 1622 aa17.1■□□□□ 0.33
VRK3-215ENST00000599138 OSCARQ8IYS5 282 aa17.09■□□□□ 0.33
VRK3-215ENST00000599138 TDRD9Q8NDG6 1382 aaKnown RBP17.09■□□□□ 0.33
VRK3-215ENST00000599138 WRNQ14191 1432 aaPredicted RBP eCLIP17.08■□□□□ 0.32
VRK3-215ENST00000599138 TOP2BQ02880 1626 aa17.07■□□□□ 0.32
VRK3-215ENST00000599138 BIVM-ERCC5R4GMW8 1640 aa17.07■□□□□ 0.32
VRK3-215ENST00000599138 SYNJ1O43426 1573 aa17.05■□□□□ 0.32
VRK3-215ENST00000599138 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
VRK3-215ENST00000599138 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
VRK3-215ENST00000599138 ABCA5Q8WWZ7 1642 aa16.97■□□□□ 0.31
VRK3-215ENST00000599138 GAPVD1Q14C86 1478 aa16.97■□□□□ 0.31
VRK3-215ENST00000599138 CHD1O14646 1710 aa16.96■□□□□ 0.31
VRK3-215ENST00000599138 SNAPC4Q5SXM2 1469 aa16.96■□□□□ 0.31
VRK3-215ENST00000599138 MAGI1Q96QZ7 1491 aaPredicted RBP16.96■□□□□ 0.31
VRK3-215ENST00000599138 PBRM1Q86U86 1689 aa16.93■□□□□ 0.3
VRK3-215ENST00000599138 FBLN2P98095 1184 aa16.9■□□□□ 0.3
VRK3-215ENST00000599138 SYNJ2O15056 1496 aa16.89■□□□□ 0.29
VRK3-215ENST00000599138 CHMP7Q8WUX9 453 aaPredicted RBP16.86■□□□□ 0.29
VRK3-215ENST00000599138 ERICH3Q5RHP9 1530 aa16.82■□□□□ 0.28
VRK3-215ENST00000599138 RIMBP3CA6NJZ7 1639 aa16.81■□□□□ 0.28
VRK3-215ENST00000599138 RIMBP3BA6NNM3 1639 aa16.81■□□□□ 0.28
VRK3-215ENST00000599138 RIMBP3Q9UFD9 1639 aa16.81■□□□□ 0.28
VRK3-215ENST00000599138 ARHGEF11O15085 1522 aa16.81■□□□□ 0.28
VRK3-215ENST00000599138 CLASP1Q7Z460 1538 aa16.81■□□□□ 0.28
VRK3-215ENST00000599138 ADAMTS12P58397 1594 aa16.81■□□□□ 0.28
VRK3-215ENST00000599138 FHAD1B1AJZ9 1412 aa16.78■□□□□ 0.28
VRK3-215ENST00000599138 GRIN2AQ12879 1464 aa16.77■□□□□ 0.28
VRK3-215ENST00000599138 TRIM41Q8WV44 630 aa16.74■□□□□ 0.27
VRK3-215ENST00000599138 KIF27Q86VH2 1401 aa16.73■□□□□ 0.27
VRK3-215ENST00000599138 NUP160Q12769 1436 aa16.72■□□□□ 0.27
VRK3-215ENST00000599138 IGF1RP08069 1367 aa16.71■□□□□ 0.27
VRK3-215ENST00000599138 CEP170Q5SW79 1584 aa16.68■□□□□ 0.26
VRK3-215ENST00000599138 ARAP1Q96P48 1450 aa16.67■□□□□ 0.26
VRK3-215ENST00000599138 CYB5RLQ6IPT4 315 aa16.64■□□□□ 0.25
VRK3-215ENST00000599138 CUL7Q14999 1698 aa16.63■□□□□ 0.25
VRK3-215ENST00000599138 SHROOM2Q13796 1616 aa16.61■□□□□ 0.25
VRK3-215ENST00000599138 CARMIL1Q5VZK9 1371 aa16.58■□□□□ 0.24
VRK3-215ENST00000599138 ERCC6L2Q5T890 1561 aa16.55■□□□□ 0.24
VRK3-215ENST00000599138 RUSC2Q8N2Y8 1516 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms