RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 NISCHQ9Y2I1 1504 aa35.49■■■■□ 3.27
SHKBP1-218ENST00000598907 ABCC9O60706 1549 aa33.18■■■□□ 2.9
SHKBP1-218ENST00000598907 CCDC180Q9P1Z9 1646 aa32.25■■■□□ 2.75
SHKBP1-218ENST00000598907 DNAJC5BQ9UF47 199 aa31.8■■■□□ 2.68
SHKBP1-218ENST00000598907 RB1CC1Q8TDY2 1594 aa31.12■■■□□ 2.57
SHKBP1-218ENST00000598907 PABPN1Q86U42 306 aaKnown RBP eCLIP30.72■■■□□ 2.51
SHKBP1-218ENST00000598907 NACADO15069 1562 aa30.65■■■□□ 2.5
SHKBP1-218ENST00000598907 UNC13AQ9UPW8 1703 aa30.47■■■□□ 2.47
SHKBP1-218ENST00000598907 DCAF8L2P0C7V8 631 aa30.42■■■□□ 2.46
SHKBP1-218ENST00000598907 BICRAQ9NZM4 1560 aa30.25■■■□□ 2.43
SHKBP1-218ENST00000598907 CECR2Q9BXF3 1484 aa29.93■■■□□ 2.38
SHKBP1-218ENST00000598907 CC2D2AQ9P2K1 1620 aa29.89■■■□□ 2.37
SHKBP1-218ENST00000598907 MYO15BQ96JP2 1530 aa29.85■■■□□ 2.37
SHKBP1-218ENST00000598907 DNAJC5Q9H3Z4 198 aa29.77■■■□□ 2.36
SHKBP1-218ENST00000598907 SHROOM4Q9ULL8 1493 aa29.66■■■□□ 2.34
SHKBP1-218ENST00000598907 EIF4G1Q04637 1599 aaKnown RBP29.6■■■□□ 2.33
SHKBP1-218ENST00000598907 SCRIBQ14160 1630 aa29.45■■■□□ 2.31
SHKBP1-218ENST00000598907 ZCCHC6Q5VYS8 1495 aaKnown RBP29.25■■■□□ 2.27
SHKBP1-218ENST00000598907 DCAF1Q9Y4B6 1507 aa29.18■■■□□ 2.26
SHKBP1-218ENST00000598907 CUX2O14529 1486 aa28.85■■■□□ 2.21
SHKBP1-218ENST00000598907 ERCC6Q03468 1493 aa28.71■■■□□ 2.19
SHKBP1-218ENST00000598907 TRIM41Q8WV44 630 aa28.28■■■□□ 2.12
SHKBP1-218ENST00000598907 NCAPD3P42695 1498 aa28.27■■■□□ 2.12
SHKBP1-218ENST00000598907 NESP48681 1621 aa28.25■■■□□ 2.11
SHKBP1-218ENST00000598907 THOC2Q8NI27 1593 aaKnown RBP28.13■■■□□ 2.09
SHKBP1-218ENST00000598907 ATAD2BQ9ULI0 1458 aa28.11■■■□□ 2.09
SHKBP1-218ENST00000598907 HMGXB3Q12766 1538 aa28.04■■■□□ 2.08
SHKBP1-218ENST00000598907 SMARCA2P51531 1590 aa28.01■■■□□ 2.07
SHKBP1-218ENST00000598907 SMARCA4P51532 1647 aa27.92■■■□□ 2.06
SHKBP1-218ENST00000598907 KIF21AQ7Z4S6 1674 aa27.88■■■□□ 2.05
SHKBP1-218ENST00000598907 BAZ1BQ9UIG0 1483 aaKnown RBP27.85■■■□□ 2.05
SHKBP1-218ENST00000598907 LAMC3Q9Y6N6 1575 aa27.83■■■□□ 2.05
SHKBP1-218ENST00000598907 PDS5BQ9NTI5 1447 aa27.67■■■□□ 2.02
SHKBP1-218ENST00000598907 BAZ1AQ9NRL2 1556 aaPredicted RBP27.62■■■□□ 2.01
SHKBP1-218ENST00000598907 PEG3Q9GZU2 1588 aa27.56■■■□□ 2
SHKBP1-218ENST00000598907 MRC2Q9UBG0 1479 aa27.55■■■□□ 2
SHKBP1-218ENST00000598907 WDR62O43379 1518 aa27.5■■□□□ 1.99
SHKBP1-218ENST00000598907 CADPSQ9ULU8 1353 aa27.39■■□□□ 1.98
SHKBP1-218ENST00000598907 MROH2BQ7Z745 1585 aa27.39■■□□□ 1.97
SHKBP1-218ENST00000598907 OSCARQ8IYS5 282 aa27.34■■□□□ 1.97
SHKBP1-218ENST00000598907 CEP164Q9UPV0 1460 aa27.28■■□□□ 1.96
SHKBP1-218ENST00000598907 RIMBP3CA6NJZ7 1639 aa27.22■■□□□ 1.95
SHKBP1-218ENST00000598907 RIMBP3BA6NNM3 1639 aa27.22■■□□□ 1.95
SHKBP1-218ENST00000598907 RIMBP3Q9UFD9 1639 aa27.22■■□□□ 1.95
SHKBP1-218ENST00000598907 FANCD2Q9BXW9 1451 aa27.15■■□□□ 1.94
SHKBP1-218ENST00000598907 WIZO95785 1651 aa27.05■■□□□ 1.92
SHKBP1-218ENST00000598907 ARHGEF11O15085 1522 aa27.01■■□□□ 1.91
SHKBP1-218ENST00000598907 URB2Q14146 1524 aaKnown RBP27■■□□□ 1.91
SHKBP1-218ENST00000598907 CFTRP13569 1480 aa26.9■■□□□ 1.9
SHKBP1-218ENST00000598907 TRHP20396 242 aaPredicted RBP26.88■■□□□ 1.89
SHKBP1-218ENST00000598907 CYB5RLQ6IPT4 315 aa26.84■■□□□ 1.89
SHKBP1-218ENST00000598907 ZNF608Q9ULD9 1512 aaPredicted RBP26.82■■□□□ 1.88
SHKBP1-218ENST00000598907 AEBP2Q6ZN18 517 aaPredicted RBP26.72■■□□□ 1.87
SHKBP1-218ENST00000598907 IFT140Q96RY7 1462 aa26.72■■□□□ 1.87
SHKBP1-218ENST00000598907 ARAP1Q96P48 1450 aa26.7■■□□□ 1.87
SHKBP1-218ENST00000598907 EIF4G3O43432 1585 aaKnown RBP26.67■■□□□ 1.86
SHKBP1-218ENST00000598907 CHD1O14646 1710 aa26.65■■□□□ 1.86
SHKBP1-218ENST00000598907 PRDM2Q13029 1718 aa26.65■■□□□ 1.86
SHKBP1-218ENST00000598907 TOP2AP11388 1531 aaKnown RBP26.61■■□□□ 1.85
SHKBP1-218ENST00000598907 TOPBP1Q92547 1522 aa26.55■■□□□ 1.84
SHKBP1-218ENST00000598907 FBLN2P98095 1184 aa26.49■■□□□ 1.83
SHKBP1-218ENST00000598907 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
SHKBP1-218ENST00000598907 AQRO60306 1485 aaKnown RBP eCLIP26.45■■□□□ 1.82
SHKBP1-218ENST00000598907 DNMBPQ6XZF7 1577 aa26.37■■□□□ 1.81
SHKBP1-218ENST00000598907 TARBP1Q13395 1621 aaKnown RBP26.37■■□□□ 1.81
SHKBP1-218ENST00000598907 ABCC8Q09428 1581 aa26.33■■□□□ 1.8
SHKBP1-218ENST00000598907 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
SHKBP1-218ENST00000598907 CLASP1Q7Z460 1538 aa26.25■■□□□ 1.79
SHKBP1-218ENST00000598907 POLA1P09884 1462 aaPredicted RBP26.22■■□□□ 1.79
SHKBP1-218ENST00000598907 SNAPC4Q5SXM2 1469 aa26.19■■□□□ 1.78
SHKBP1-218ENST00000598907 RAD54L2Q9Y4B4 1467 aa26.17■■□□□ 1.78
SHKBP1-218ENST00000598907 SYNJ1O43426 1573 aa26.16■■□□□ 1.78
SHKBP1-218ENST00000598907 TDRD9Q8NDG6 1382 aaKnown RBP26.15■■□□□ 1.78
SHKBP1-218ENST00000598907 CHMP7Q8WUX9 453 aaPredicted RBP26.08■■□□□ 1.77
SHKBP1-218ENST00000598907 SOGA1O94964 1423 aa26.05■■□□□ 1.76
SHKBP1-218ENST00000598907 GAPVD1Q14C86 1478 aa26.04■■□□□ 1.76
SHKBP1-218ENST00000598907 MAGI1Q96QZ7 1491 aaPredicted RBP26.01■■□□□ 1.75
SHKBP1-218ENST00000598907 WDR97A6NE52 1622 aa25.97■■□□□ 1.75
SHKBP1-218ENST00000598907 FGD5Q6ZNL6 1462 aa25.96■■□□□ 1.75
SHKBP1-218ENST00000598907 SYNJ2O15056 1496 aa25.95■■□□□ 1.74
SHKBP1-218ENST00000598907 GRIN2BQ13224 1484 aa25.93■■□□□ 1.74
SHKBP1-218ENST00000598907 PBRM1Q86U86 1689 aa25.87■■□□□ 1.73
SHKBP1-218ENST00000598907 ERCC6L2Q5T890 1561 aa25.85■■□□□ 1.73
SHKBP1-218ENST00000598907 CUX1P39880 1505 aa25.78■■□□□ 1.72
SHKBP1-218ENST00000598907 KIF13AQ9H1H9 1805 aa25.74■■□□□ 1.71
SHKBP1-218ENST00000598907 CEP170Q5SW79 1584 aa25.68■■□□□ 1.7
SHKBP1-218ENST00000598907 ILDR1Q86SU0 546 aaPredicted RBP25.66■■□□□ 1.7
SHKBP1-218ENST00000598907 ABCA5Q8WWZ7 1642 aa25.65■■□□□ 1.7
SHKBP1-218ENST00000598907 GRIN2AQ12879 1464 aa25.63■■□□□ 1.69
SHKBP1-218ENST00000598907 ABCA10Q8WWZ4 1543 aa25.55■■□□□ 1.68
SHKBP1-218ENST00000598907 ADAMTS12P58397 1594 aa25.55■■□□□ 1.68
SHKBP1-218ENST00000598907 SHROOM2Q13796 1616 aa25.55■■□□□ 1.68
SHKBP1-218ENST00000598907 NUP160Q12769 1436 aa25.53■■□□□ 1.68
SHKBP1-218ENST00000598907 KDM4FA0A1W2PPD8 638 aa25.48■■□□□ 1.67
SHKBP1-218ENST00000598907 FAM69CQ0P6D2 419 aa25.46■■□□□ 1.67
SHKBP1-218ENST00000598907 KDM6BO15054 1643 aa25.44■■□□□ 1.66
SHKBP1-218ENST00000598907 ABCC10Q5T3U5 1492 aa25.42■■□□□ 1.66
SHKBP1-218ENST00000598907 DIP2BQ9P265 1576 aa25.4■■□□□ 1.66
SHKBP1-218ENST00000598907 PRG4Q92954 1404 aaPredicted RBP25.4■■□□□ 1.66
SHKBP1-218ENST00000598907 FHAD1B1AJZ9 1412 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 186.4 ms